1A-I | 22.7–31.1 | *IWB8188, QPh.nau-1A, QPH-wPt-666607* | |

1A-II | 364.6-378.3 | *V1.0:360178467, IWB46432, V1.0:373864596* | *1A03G0753800 (EUI1)* |

1A-III | 495.5-515.8 | *V1.0:491026490, Chr1A-B38-Hap3, iniaGBS34518*, | |

1B-I | 7.5–15.8 | *QHt.mna-1B, V1.0:5674438, QPht.dms-1B, QPH-1B-wmc85* | |

1D-I | 2.6–14.4 | *IWB74218, AX-110520197, QPht.nfcri-1D, Lr10, IWA1789, QPh.saas-1DS, Chr1D-B5-Hap4, QPh-1D* | |

2A-I | 32.7–41.6 | *QPH-2A-gwm359, AX-110988136, 1038091, Ppd-A1* | *Ppd-A1* |

2A-II | 79.5–92.8 | *Rht_NM9, IWB1573, Qph.ccshau-2A, AX-94656878* | *2A03G0267400 (spl32)* |

2A-III | 127.8-139.8 | *QPH-gwm515, FUL3-2A, QPH-wpt667287* | *FUL3-2A* |

2A-IV | 607.2-616.7 | *IWA1174, Chr2A-B39-Hap1, IWB7310* | *2A03G0876600* (*Ghd8*) |

2A-V | 693.4-705.4 | *TaCOLD1-2A, IWB46979, Chr2A-B48-Hap3* | *TaCOLD1-2A* |

2A-VI | 758.4-762.6 | *IWB7413, TaARF12-2A, V1.0:755382577* | *TaARF12-2A* |

2A-VII | 770.5-778.5 | *QPht.cau-2A.2, QPH-2A-gwm382, V1.0:765658247* | |

2B-I | 41.2–49.2 | *WMC154, Rht8/RNHL-B1, Qph.tamu.2B.1.3* | *Rht8/RNHL-B1* |

2B-II | 612.3-621.4 | *QPh.hwwgr-2BL, IWA4275, QHt.ris-2B* | |

2B-III | 688.6-703.3 | *QPH.caas-2BL.2, QPH-wPt-0489, iniaGBS46446* | |

2B-IV | 710.6-721.3 | *AX-94687989, iniaGBS11989, QHt.mbr-2B, Qph-2B* | |

2B-V | 770.9-779.3 | *QPH.caas-2BL.1, V1.0:760452537, IWB44344, TaARF12-2B, S2B_770054032* | *TaARF12-2B* |

2D-I | 18.0-27.9 | *QPh.cau-2D.2, Xgwm261, QPH-2D-gwm261, iniaGBS19651, QPH-gwm132, QPht.cau-2D.2, QHt.cd-2D, QPh.cau-2D.3, QPh-2DS, QPht.cau-2D.1, Qncb.PH-2D, QPH.hbaas-2DS, Rht8, QPH.saas-2D.2* | *Rht8/RNHL-D1* |

2D-II | 32.8–40.0 | *QHt.tam-2D, Ppd-D1, QHgt.ua-2D, QHt.mcb-2D, V1.0:31361952, qPHTIR.2D.1* | *Ppd-D1* |

3A-I | 8.0-17.6 | *QPH-wPt_9303, QPH-Xpsp3047, QPH-wPt_2253, QPH-Xbarc57, IWB28092, QPht.unl.3A.1, QPH-wPt-2938* | *3A03G0043500* (*sui1*) |

3A-II | 53.5–58.1 | *V1.0:50300045, QPH-wPt7608_3A, qPh-3A.1* | *3A03G0184200* (*OsTLP27*) |

3A-III | 311.7-322.3 | *QPH-Xbarc356, QPH-barc19.3ASC, QPH-3A-barc19* | |

3A-IV | 648.7-659.7 | *V1.0:645548030, iniaGBS12109, Qph3A-2, V1.0:656157387* | *3A03G0950800 (sd1*) |

3A-V | 690.7–702.0 | *CFA2193, AX-109432369, IWB60645, AX-95090222* | |

3B-I | 11.6–23.1 | *V1.0:261585, QPH.co-3B.2, Rht5, QPH.co-3B.3, Chr3B-B6-Hap1, QPH-Xwmc754, QPH-Xbarc102* | *3B03G0056000* (*sui1*) |

3B-II | 552.6-559.1 | *IWB36517, Chr3B-B60-Hap6, IWB35908* | |

3B-III | 809.3-820.7 | *QPH-wPt-3005, Chr3B-B109-Hap2, Qph-3B* | |

3D-I | 565.9–572.0 | *QPH-cfd223, QPH-wPt-671729, QPh-AxC.ipbb-3D* | *3D03G1018100* (*OsHUB2*) |

4A-I | 514.9–515.0 | *QPH-wmc48a_4a, QPH-wmc048c, QPH-wmc048d* | |

4A-II | 648.8-657.2 | *AX-110399093, QPh.hwwgr-4AL, QPH-wPt7924_4A, QPh-4A.1* | |

4B-I | 24.2–37.0 | *QPh-4B.1, V1.0:21556377, QPh.hwwgr-4BS.1, QPh.sicau-4B, qPh-4B.2, qPHTIR.4B.1, Rht-B1/Rht3/Rht11/Rht17, QPht.dms-4BS, QPh.cau-4B.2, QTL17, QHEI.WM-800.4B.a, QPh-4BS, QPht.dms-4B.1, QHt.mbr-4B, IWB56078, Pht.Sparc-4B, QPH.caas-4BS.2* | *Rht-B1* |

4B-II | 101.7-106.3 | *Qph4B, QPH-wmc048a, Qph-4B, QPh.hwwgr-4BS.2* | |

4B-III | 426.5-441.6 | *TaPRR73-4B, Chr4B-B28-Hap5, QPH-gwm513, QPht.nfcri-4B, QHt.crc-4B* | *TaPRR73-4B* |

4B-IV | 543.7–552.0 | *QHt.ipk-4B, QPht.dms-4BL, IWB6952* | *4B03G0723900*(*PAD*), *4B03G0723300*(*GA2ox*) |

4B-V | 638.8-650.1 | *QHt.mna-4B, QPH-Xgwm538, IWB64987, Chr4B-B36-Hap2* | *4B03G0903600* (*OsDCL1*) |

4D-I | 15.2–37.1 | *QPH-IWB16898, QHt.mcb-4D, V1.0:12427563, AX-109281717, Rht-D1/Rht10, AX-108916749, QPht.dms-4D, QPht.dms-4DS, AX-89605902, QPH-IWB61489, QHt.fcu-4D, QPh-4D, QPH.caas-4DS.1, QPH.hbaas-4DS, IWA5156, AX-110394481, QPH.saas-4D, QHt.cd-4D, QPH.caas-4D* | *Rht-D1* |

4D-II | 116.1–125.0 | *QPH-Xwmc52, QPht.cau-4D.2, QPH-wPt-0941* | *4D03G0260400* (*D53*) |

5A-I | 105.9–113.0 | *QPH-Xgwm293, QHt.ipk-5A.1, TaWUS-like-5A* | *TaWUS-like-5A* |

5A-II | 445.0-450.5 | *BARC100, Chr5A-B33-Hap4, QHt.ipk-5A.2* | |

5A-III | 495.5-514.8 | *QPht.dms-5A, IWA6573, QPH.caas-5AL.1, QPH-Xbarc330, AX-109863885, QHEI.WM-800.5A, S5A_514260464* | |

5A-IV | 522.7–531.0 | *Chr5A-B54-Hap3, 5AL.1, V1.0:520569746, QPH-barc330, qPh-5AL, QPH.hbaas-5AL, QHt.inra-5a* | |

5A-V | 559.9-563.5 | *1077814, Rht9, QPH-IWB9503, QPht.sau-5A* | |

5A-VI | 585.4-597.3 | *QTn.sau-5A, Vrn1-5A, IWA455, QPht.dms-5AL, QPH.caas-5AL.2* | *Vrn1-5A* |

5A-VII | 671.9-681.5 | *IWA4223, AX-110446653, QHT.uia2.5A, IWA1670, IWA2839* | *5A03G1208400* (*OsDCL1*) |

5A-VIII | 695.4-710.9 | *iniaGBS40019, QPh.hwwgr-5AL, Rht12, Vrn2-5A/ZCCT1-5A, qPH.5A, iniaGBS12846, IWB12585, IWA2646* | *5A03G1269600* (*GA2ox*), *Vrn2-5A/ZCCT1-5A* |

5B-I | 424.4–435.0 | *QPht.sau-5B, IWA5743, IWB55844* | *5B03G0633700* (*OsZHD1*) |

5B-II | 490.4-500.4 | *QPh-5B, Qncb.PH-5B, Qph.tamu.5B* | |

5B-III | 509.9–511.0 | *V1.0:502805757, WMC0415b, QPh-5B.3* | |

5B-IV | 577.0-584.1 | *Vrn1-5B, QPh-AxC.ipbb-5B, QPH-5B-gwm408, AX-108921249, IWB27379* | *Vrn1-5B* |

5B-V | 690.4-697.1 | *QPht.qp-5B, IWB40756, AX-109378384* | |

5D-I | 467.3-475.5 | *QPH-gdm063, Vrn1-5D, QPh.hwwgr-5DL* | *Vrn1-5D* |

5D-II | 552.2–556.0 | *IWB22335, IWB48315, IWB11620* | |

6A-I | 1.6–5.4 | *Chr6A-B2-Hap5, V1.0:1, QPh-6A.1* | *6A03G0011100* (*OsCOMT*) |

6A-II | 411.6-416.8 | *IWB7319, QHEI.WM-800.6A, Rht24* | *6A03G0611100* (*TaGA2ox-A9*) |

6A-III | 547.5–553.0 | *QPht.cau-6A.3, QPlht.cob-6A.1, SVP1-6A* | *SVP1-6A* |

6B-I | 43.4–47.0 | *IWB26775, IWB1708, AX-110671479* | *6B03G0142600* (*OsbHLH59*) |

6B-II | 84.2–85.0 | *iniaGBS3253, QPht.qp-6B, QHt-6B* | |

6B-III | 705.2-713.6 | *qPh-6B.3, QPH.caas-6BL, IWB62788, IWB49142* | |

6D-I | 313.3-314.4 | *QHt-6D, AX-111080263, TaPRR1-D1* | *TaPRR1-D1* |

7A-I | 20.4–27.4 | *AX-94941145, IWB4506, QHT.usw-7A* | |

7A-II | 226.3–232.0 | *QPH.cgb-7A.3, QPH.cgb-7A.1, QPH-wPt-0961* | *7A03G0560900* (*RCN11*) |

7B-I | 0.8–10.1 | *QPht.qp-7B, QPlht.cob-7B, IWB45643, Vrn3-7B* | *Vrn3-7B* |

7B-II | 26.3–36.2 | *IWB19554, QPh.nau-7B, QHt.crc-7B, QHt.mna-7B, IWA2893* | |

7B-III | 710.2–721.0 | *IWB73409, V1.0:706248472, Rht13* | |

7D-I | 69.0–81.0 | *V1.0:63508300, Vrn3-7D, QHT.uia2-7D, QPht.dms-7D.1, V1.0:76359363* | *Vrn3-7D* |