Mice
A53T-syn mice were bred by crossing PITX3 +/IRES2−tTA mice with tetO-A53T transgenic mice. The protocols for the establishment of A53T-syn mice have been described previously [38]. C57/BL6J wild type mice were used as control. The mice were housed in a 12 h light/dark cycle and fed regular diet ad libitum. All mouse experiments were approved by the Institutional Animal Care and Use Committees of Emory university.
Reagents
The chemicals used in the study include recombinant mouse IL-2 protein (402-ML-020/CF, R&D Systems), Dynabeads™ mouse T-activator CD3/CD28 (11456D, Thermo Fisher Scientific), recombinant mouse IL-12 protein (419-ML-010/CF, R&D Systems), recombinant mouse IL-4 protein (404-ML-010/CF, R&D Systems), recombinant mouse TGF-β protein (763102, BioLegend), recombinant mouse IL-6 protein (406-ML-005/CF, R&D Systems), 2-Mercaptoethanol (M6250, M6250-100ML), 100 U/ml penicillin/streptomycin (15140122, Gibco™, Thermo Fisher Scientific), protease inhibitor cocktail (P2714, Sigma-Aldrich), bovine serum albumin (A1933-100G, Sigma-Aldrich), and BMS-1166 (S8859, Selleck).
Antibodies used in the study include anti-mouse CD63 mouse antibody (sc-5275, Santa Cruz Biotechnology), anti-mouse Alix antibody (sc-53540, Santa Cruz Biotechnology), anti-mouse TSG101 antibody (sc-7964, Santa Cruz Biotechnology), anti-mouse GAPDH antibody (sc-47724, Santa Cruz Biotechnology), anti-mouse L1CAM antibody (ab24345, Abcam), anti-mouse α-synuclein antibody (AHB0261, syn211, Thermo Fisher Scientific), anti-mouse programmed death ligand 1 (PD-L1) antibody (14-5983-82, MIH1, Thermo Fisher Scientific), anti-mouse Tyrosine Hydroxylase antibody (sc-25269, Santa Cruz Biotechnology), and anti-human Tyrosine Hydroxylase Polyclonal Antibody (OPA1-04050, Thermo Fisher Scientific). Monoclonal antibodies against mouse CD3 (clone 145-2C11), CD4 (clone GK1.5), T-bet (clone 4B10), PD-L1 (clone MIH7), IFN-γ (clone XMG1.2), Ki67 (clone 16A8), and PD-1 (clone 29F.1A12) were purchased from Biolegend; against mouse CD45 (clone 30F11), CD3 (clone REA641), CD8 (clone REA601), CD62L (clone MEL14-H2.100), CD25 (clone 7D4), IL-4 (clone BVD4-1D11), and CD44 (clone DB105) from Miltengy Biotec; and against mouse GATA-3 (clone TWAJ) from Bioscience.
Plasmids used in this study include pRK5 vector and pRK5-A53T-syn.
Cell Lines
HEK293T (ATCC, CRL-3216), H4 (ATCC, HTB-148), and human embryonic microglia clone 3 (HMC3, ATCC, CRL-3304) cells were purchased from American Type Culture Collection (ATCC). HEK293Tand H4 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 U/mL of penicillin, and 100 µg/mL of streptomycin. HMC3 cells were cultured in Modified Eagle’s Medium (MEM) with 10% FBS, 100 U/mL of penicillin and 100 µg/mL of streptomycin. SN4741 cells were cultured in DMEM supplemented with 20% glucose and glutamine (200mM). H4 and HMC3 cells were maintained at 37°C in a 5% CO2 in incubator and SN4741 cells were maintained at 33°C in a 5% CO2 incubator.
Transfection
The cells were cultured until it reached 70%~90% fluency for transfection. The culture medium was changed with exosome-depleted culture medium by replacing the regular FBS with exosome-depleted FBS. Exosome-depleted FBS was prepared by ultracentrifuging the FBS for 16 h at 4°C and then filtered with a 100-nm filter. The culture media were collected for exosome purification 48 h after transfection.
Organoid Culture
Human iPSC lines carrying A53T mutant SNCA and A53T mutation-corrected SNCA were purchased from NINDS Human Cell and Data Repository. The protocols for the maintenance of iPSC lines and culture of midbrain organoids from human iPSC have been described in a previous study [39]. In brief, cultured human iPSC colonies were detached with Collagenase Type IV and washed with fresh stem cell medium 7 days after passage. From day 1 to day 4, the iPSC lines were cultured on an Ultra-Low attachment 6-well plate containing EB medium composed of DMEM:F12, 15% Knockout Serum Replacer, 1 x Glutamax, 1 x 2-Mercaptoenthanol, 100 nM LDN-193189, 10 µM SB-431542, 100 ng/ml SHH (Peprotech), 2 µM Purmorphamine (Stemgent), 100 ng/ml FGF-8 (Peprotech). On day 5, the EB medium was switched to SHH medium, containing DMEM:F12, 1 x N2 Supplement, 1 x Glutamax, 100 nM LDN-193189, 3 µM CHIR99021, 100 ng/ml SHH, 2 µM Purmorphamine, 100 ng/ml FGF-8. From day 7 to day 13, SHH medium was replaced with induction medium, containing DMEM:F12, 1 x N2 Supplement, 1 x Glutamax, 100 nM LDN-193189, 3 µM CHIR99021. On day 14, 10–20 organoids were cultured in SpinΩ with differentiation medium, consisting of Neurobasal, 1 x B27 Supplement, 1 x Glutamax, 1 x 2-Mercaptoenthanol, 20 ng/ml BDNF, 20 ng/ml GDNF, 0.2 mM Ascorbic Acid, 1 ng/ml TGFβ, and 0.5 mM c-AMP. The culture media of midbrain organoids were collected on day 28 when the DAergic neurons matured.
Exosome Extraction from Cell Culture Medium
The exosomes from cell culture were extracted using sequential centrifugation process as previously reported [40]. Briefly, the culture media were collected and subsequently subjected to sequential centrifugation steps at 300g for 5 min, 800g for 5 min, and 2,000g for 10 min to remove cells and cell debris. The supernatant was further centrifuged by 10,000g for 30 min at 4°C to remove large extracellular vesicles. The EVs were purified by ultracentrifugation at 110,000g and 4°C for 70 min, washed with 1 x PBS, and re-centrifugated under the same condition.
Neuronal Exosome Extraction from Mouse Plasma
Exosomes were isolated from mouse plasma using antibody-coated superparamagnetic microbeads following the protocol as previously described [33]. Isolated exosomes were fixed using a fixing buffer (4% paraformaldehyde (PFA) / 5% glutaraldehyde) for transmission electron microscopy (TEM) imaging. For detection of exosome markers using western blot, the exosome proteins were extracted by incubating the beads with 110 µL 0.1% BSA/PBS (pH7.4) containing Triton X-100 (1%) and protease and phosphatase inhibitors for 1 h at room temperature with gentle shaking.
Western Blot
Whole cell lysates were prepared in SDS containing sample buffer (31.5 mM Tris-HCl, pH 6.8, 10% glycerol, 1% SDS, and 0.005% bromophenol blue) and equal protein amounts of lysates (20–30 µg) were separated by 10–15% SDS-PAGE gel at 100 V for 1.5 h. Proteins were transferred to polyvinylidene difluoride membrane at 25 V for 1.5 h using a half-dry blotting system (Bio-Rad Laboratories). Blots were probed by incubation with primary antibodies (1:1,000) overnight at 4°C, washed three times, and then incubated with the secondary antibodies (1:10,000) at room temperature for 1 h. Images were developed in an M35A X-OMAT Processor system (Kodak) using ECL reagent (GE Healthcare).
Transmission Electron Microscopy
Purified exosomes were fixed with 1 mL of 4% PFA for 5 min. Five - seven µL exosome suspension solution was loaded on the grid and incubated for 1 min. Twenty drops of filtered 1% uranyl acetate (UA) were applied to the EM grid. After removing the excess UA solution, the grid was rinsed with a drop of water, and placed on the table for 10 min at room temperature. The grid was imaged by TEM at 80 kV.
Isolation of Mouse Spleen Cells, CD4 + T Cells, and CD8 + T Cells
Single-cell spleen lymphocyte suspensions were obtained from spleens of 8-week-old A53T-syn transgenic mice or WT mice using the lymphocyte separation medium according to the manufacturer’s instructions (CL5030, CEDARLANE). For the purification of CD4 + and CD8 + T cells, non-CD4 + cells and non-CD8 + cells were removed by negative selection using MojoSort Mouse CD4 T or CD8 T Cell Isolation Kits according to the protocols provided by manufacture (BioLegend). The purity of CD4 + T cells and CD8 + T cells was determined using flow cytometry. For isolation of naïve CD4 + T cells (CD4 + CD25-CD44lowCD62Lhigh), purified CD4 + T cells were further sorted using antibodies to mouse CD4-APC, CD25-FITC, CD44-PE, and CD62L-PE-Cy7 by flow cytometry. Purity of CD4 + CD25-CD44lowCD62Lhigh T cells after isolation was over 97%.
Culture of Mouse Spleen Cells, CD4 + T Cells, and CD8 + T Cells
Isolated mouse spleen cells, CD4+, and CD8 + T cells were cultured in 24-well flat bottom plates (0.5 x 106 cells per well) in 0.5 mL of complete RPMI 1640 media supplemented with 10% exosome-depleted FBS, 200 mM L-glutamine, 100 U/ml penicillin/streptomycin and 55 mM 2-Mercaptoethanol (RP-10). Mouse T-Activator αCD3/αCD28 beads and 50 ng/ml recombinant mouse IL-2 were added to the culture medium for long term maintenance. The cells were cultured for 24 h before exosome treatment.
Differentiation Induction of Mouse Naïve CD4 + T Cells
Isolated mouse naïve CD4 + T cells were cultured in 24-well plates (0.5 x 106 cells per well) in 0.5 ml of complete RPMI 1640 media supplemented with 10% exosome-depleted FBS, 200 mM L-glutamine, 100 U/ml penicillin/streptomycin and 55 mM 2-Mercaptoethanol in the presence of Mouse T-Activator αCD3/αCD28 beads in addition to 50 ng/ml recombinant mouse IL-2. Cells were cultured under Th1 (50 ng/ml recombinant IL-12 and 10 mg/ml anti-IL-4), Th2 (50 ng/ml recombinant IL-4 and 10 mg /ml anti-IFN-γ), Th17 (10 ng/ml recombinant TGF-β, 100 ng/ml recombinant IL-6, 10 mg/ml anti-IFN-γ and 10 mg/ml anti-IL-4) or iTreg (10 ng/ml recombinant TGF-β) conditions. The naïve cells were cultured for 24 h under different conditions before exosome treatment.
Exosome Treatment
For most of exosome treatment experiments, 5 µg exosomes were added into the culture medium of mouse splenocytes or purified CD4 + or CD8 + T cells for 48 h (The final concentration of exosome in medium is 10 µg/mL). To observe the dose-effect relationship, varying amounts of exosome (20–30 µg/mL) were used. For differentiation assay, cells were treated with exosomes for 96 h.
Blocking of PD-L1
To block PD-L1 and PD-1 interaction, anti-PD-L1 antibody (4 µg/ml for final concentration; clone MIH-1; Thermo Fisher Scientific) [41] or BMS-1166 (1µM for final concentration; S8859, Selleck) [42], was added into the CD4 + and CD8 + T cell culture media before the treatment of exosomes.
Flow Cytometry
Cytokines, transcription factors, and surface markers of T cells were evaluated by flow cytometry with a FACSCanto II Cell Analyzer (BD Biosciences) following the recommended protocols by eBioscience™. To detect intracellular expression of INF-γ, IL-4, and IL-17A in CD4 + or CD8 + T cells, cells were first treated with 1µg/mL ionomycin (Sigma), 50 ng/ml phorbol 12-myristate 13-acetate (PMA, Sigma), and 2 ug/mL Brefeldin A (BioLegend) for 4–6 h at 37°C before flow cytometry analysis.
Immunocytochemistry
DA organoids differentiated from iPSC were cultured on the glass coverslip (Corning Incorporated) with 24-well plates and stained for immunocytofluorescence as described [39]. Images were acquired with an Olympus DP70 fluorescent microscopy (Olympus Corporation, Japan).
Statistics
Statistical analysis was performed with GraphPad Prism software (Version 8). A two-tailed unpaired Student t test was used for statistical analysis of two groups. One-way analysis of variance (ANOVA) with Tukey’s multiple comparisons test was used to compare the means of three or more groups. Two-way ANOVA followed by Tukey’s multiple comparisons test was used to evaluate data with two factors. A p-value < 0.05 was considered statistically significant.