Materials
Cell culture media: DMEM (#11965092), RPMI1640 (#21870084) and L-Glutamine (#25030081) were purchased from ThermoFisher Scientific (Life Technologies). Oligomycin A, 2-deoxyglucose, Digoxin, Matrigel®, methylcellulose, DMSO, analytical grade acetonitrile and methanol were purchased from Merck Life Science UK (Sigma Aldrich). IACS-10759 [12, 13] was purchased from Chemietek (Indianapolis, IN, US).
Radiopharmaceuticals
Saline solution of [99mTc]Pertechnetate for intravenous injection was purchased from the West of Scotland Radionuclide Dispensary, NHS Greater Glasgow and Clyde, and diluted in cell culture media before use. [18F]Tetrafluoroborate sodium salt was produced at the radiopharmaceutical unit of the West of Scotland Glasgow PET Centre by the in-house developed radiolabeling procedure (publication pending). Briefly, [18F]fluoride obtained from the GE PETTrace 800 cyclotron (60-80 GBq starting activity) was reacted with boron trifluoride-methanol complex in acetonitrile solution and purified by anion-exchange on the Solid Phase Extraction cartridges, providing final [18F]Tetrafluoroborate sodium salt with better than 98% radiochemical purity and molar activity in the range of 30-100 GBq/mmol at the time of injection in physiologic saline solution.
Cell Culture
NIH A549 and HEK293T cell lines were purchased from ATCC. Absence of mycoplasma was confirmed by regular in-house testing. HEK293T cells were grown in DMEM and A549 cells in RPMI1640 , supplemented with 2 mM Glutamine and 10% FBS (Gibco™). Drugs for in vitro use were prepared as follows: Digoxin and oligomycin A: 10 mM stock was prepared in DMSO, diluted in DMEM to 100 µM and used at 1:100; 2-DG: 300 mM stock was prepared in distilled H2O and used at 1:100; IACS-10759: 10 mM stock was prepared in DMSO, diluted in complete RPMI to 10 µM, and used at 1:1000, 1:200 or 1:100.
Generation of mNIS-expressing clonal cell lines
Lentiviral vectors carrying either Strawberry-P2A-mNIS or Luc2-P2A-mNIS (referred to as “SN” and “LN”, respectively) reporter gene cassette under the PGK promoter [14] were produced essentially as described previously [15]. Briefly, 80% confluent HEK293T cells were transfected with the three packaging plasmids and the SN or the LN transfer plasmids using the Lipofectamine protocol (Life Technologies, Thermo Fisher Scientific). At 48 hours after transfection, virus-containing supernatants were removed, centrifuged for 5 minutes at 800g at 4°C and passed through a syringe-driven 45 µm low-protein-binding filter.
For transduction, target cells were seeded in 6-well plates and infected with 1.0-1.5 mL of the lentivirus-containing supernatant per well 16-24 hours later. HEK293T cells were transduced with the SN and A549 cells with the LN lentiviral vectors, respectively. Infected cells were harvested by trypsinisation 72 hours post-infection, seeded singly in 96 well plates and grown to confluence. Transgene expression in the resulting colonies was confirmed by fluorescence microscopy (Strawberry) or bioluminescence imaging (Luc2). Strawberry-positive (HEK293T-SN) and Luc2-positive (A549-LN) clonal cell colonies were expanded and mNIS expression in these was confirmed by [18F]TFB uptake experiments.
Metabolic characterisation of mNIS-expressing cells and their response to treatment
Cells were seeded, typically at 2×105 cells per well, in 6 well plates in normal growth medium and incubated in 5% CO2 at 37°C for 48-72 hours. For assay experiments, the medium was removed and fresh growth medium, supplemented with the drugs, or their vehicles and, in the case of uptake assays, radioactive tracers, were added to the cultures in 1 mL total volume. Protein concentration was assayed using the Pierce™ BCA (bicinchoninic acid) Protein Assay Kit (ThermoFisher Scientific). Cell counting and trypan blue exclusion assays were performed using CellDrop Automated Cell Counters (DeNovix). Experiments testing each of the conditions, including cell counts for LC-MS extractions (see below), used three biological replicates, unless stated otherwise. Individual data points were normalised to the mean of control for statistical analysis and presentation. For radioactivity measurements, decay-corrected counts were normalised to cell numbers counted in plates cultured in parallel, which had been treated as per the tested conditions, except that no radioactivity was added.
Ordinary, one-way, multiple comparisons ANOVA was performed to test statistical significance of the results, and P values calculated using Dunnett’s multiple comparisons test, comparing every condition against the control, were reported.
Cell extraction for LC-MS analysis
Briefly, 100 µL samples of growth medium were withdrawn from each well 5 minutes before the end of incubation and centrifuged for 10 minutes at 16200 g and 4 °C to remove debris. Ten µL samples of the supernatant were then extracted in 990µL of ice-cold Methanol-Acetonitrile-Water (50%:30%:20%) extraction buffer and kept at 4 °C. Shortly before the extraction the number of cells was estimated from counts that were performed in replicate plates, seeded and grown in parallel to those used in the extractions, and volume of the extraction buffer was adjusted to 0.4 mL per 106 cells. At the end of incubations (at 30, 60 or 120 minutes from the addition of conditioned medium) the medium was removed rapidly, cells were washed with 5-10 mL of ice-cold PBS, and metabolites extracted by the addition of ice-cold extraction buffer, followed by 10 minutes’ incubation on ice and 15 minutes’ gentle rocking at 4 °C. Cell extracts were transferred to 1.5 mL Eppendorf tubes and centrifuged for 10 minutes at 16200 g and 4 °C, using Eppendorf 5415D benchtop centrifuge to remove debris. Samples containing 0.2 mL of the cell or media extracts were transferred to liquid chromatography vials and stored at -80 °C.
Liquid chromatography–high resolution mass spectrometry (LC–HRMS)
LC-HRMS was performed in an Accela 600 LC system (Thermo Fisher Scientific) coupled to an Exactive (Orbitrap) mass spectrometer (Thermo Fisher Scientific). Metabolite separation was done using a SeQuant ZIC-pHILIC column (4.6 mm × 150 mm, 5μm) (Merck). The mobile phase consisted of an aqueous solution of ammonium carbonate (20 mM, pH 9.2) (A) and acetonitrile (B) and the following gradient profile was applied: linear increase of A from 20% to 80% at 0 to 30 min, 92% A 31-37 min and linear decrease of A to 20% at 37-46 min. Total injection volume was 20 µL and samples were maintained at 4 °C throughout analysis. The spectrometer was operated in both positive and negative electrospray ionisation (ESI) modes, full-scan mode over a mass range of m/z 70–1,200 at a resolution of 50,000. The capillary temperature was 320 °C and the seath and auxiliary gas flow rates were 50 and 17 units, respectively. Thermo raw files were converted to mzML files using ProteoWizard, separated into ESI positive and negative modes, and imported to MZMine 2.53 for peak processing. Metabolite identification was performed using an in-house standard library and peak areas were exported for analysis. The (peak area) energy charge ratio (ECR) was calculated from the formula ECR = ([ATP] + 0.5 [ADP])/([ATP] + [ADP] + [AMP]), where [metabolite] is the metabolite’s peak area [16].
In vitro radioactivity uptake experiments
One millilitre samples of growth medium with either drugs or their vehicles and containing, at application time, approximately 50 kBq/mL of [99mTc]pertechnetate or [18F]TFB, were added per well to 6-well plates containing tested cells. At the end of incubations, between 30 and 120 minutes from the addition of radioactivity, the media were removed rapidly and the plates were washed immediately with 5-10 mL of ice-cold PBS per well. Cells were lysed by the addition of 1 mL of RIPA lysis and extraction buffer (radioimmunoprecipitation assay, ThermoFisher Scientific, Life Technologies) per well, 10 minutes’ incubation on ice and 15 minutes’ gentle rocking at 4°C. Radioactivity of the lysates was measured using Hidex Automatic Gamma Counter (Hidex Oy, Turku, Finland). Events within the energy window of 15-200 keV ([99mTc]pertechnetate) or 400-800 keV ([18F]TFB) were used in analysis.
Animal experiments
Tumour cell implantation and treatment
9 - 14-week-old NOD/NcrCrl (Prkdcscid) mice were purchased from Charles River UK. Shortly before implantation, A549-LN cells were harvested by trypsinisation and re-suspended in an ice-cold, 50:50 mixture of serum-free RPMI and Matrigel® (Corning). To establish xenografts, 100 µL samples of cell suspensions, each containing 5 × 106 cells, were injected subcutaneously in the right flank. Xenograft diameters were measured with callipers, and the length (L) and width (W) were used to calculate the volume (V) using the simplified ellipsoid formula:
IACS-10759 as a 2mg/mL suspension in vehicle (0.2% solution of methylcellulose in distilled water), or vehicle alone, were administered by oral gavage at 10µL per g body weight.
PET-MR imaging and data analysis
Animals were imaged approximately 4 weeks from cell implantation. Immediately after IACS-10759 or vehicle administration animals were anaesthetised with 1.0 - 2.5% isoflurane in 95% oxygen and a cannula was inserted into the tail vein. At 15-20 minutes from IACS-10759 or vehicle administration animals were injected intravenously with 0.35-0.45 MBq of [18F]TFB per g body weight in 200-250 µL saline (0.9% NaCl) and transferred to a NanoScan PET/MRI (1T) (Mediso, Hungary). Respiration rate of the animals was monitored by pneumatic pad for the duration of the imaging session and their body temperature was maintained by flow of heated air. Coronal T1-weighted images, used for anatomical reference and attenuation correction, were acquired using 3D gradient-recalled echo sequence (TR 22.5msec; TE 3.8msec; flip angle 30°; data matrix, 256 × 256; slice thickness 0.70 mm; 48 slices). A 20-min static PET image was then acquired, starting 70 min from the injection of [18F]TFB.
Image reconstruction was performed using 3D Tera-Tomo software (Mediso Medical Imaging Systems, Hungary). PET scans were reconstructed using static, total-body mode with 4 iterations and 6 subsets and an energy window 400-600 keV, producing a 0.4 mm isotropic matrix. PET data were corrected for radioactivity decay, random coincidences, scatter, attenuation and dead time. Scatter and attenuation correction used the T1 3D GRE MR images. The reconstructed PET scans were co-registered with MRI scans for anatomical reference. PET/MR data were analysed using VivoQuantTM multi-modality post-processing suite (Invicro, USA). SUVmax was calculated with regions of interest over the whole of the tumour volume.
Maximum standardized uptake values (SUV) were calculated using:
where cimg is the activity concentration (MBq/mL) derived from the image ROI, ID is the injected dose, and BW is the body weight of the animal.
Long-term treatment with IACS-10759
Starting at day 23 after the tumour cell implantation the cohorts was randomly divided into two groups treated daily for 6 consecutive days with IACS-10759 (the test group; n=4) or vehicle (the control group; n=4). Calliper measurements of the tumours were taken at 24 hours before the first dose (‘0 hrs’), 24 and 96 hours after the first dose ( ’48 hrs’ and ‘120 hrs’, respectively), and 24 hours after the sixth dose (‘168 hrs’). Shortly after the last calliper measurement the animals were sacrificed by cervical dislocation, the tumours rapidly excised and fixed in 4% NBF.
Immunohistochemistry (IHC) staining
All IHC staining was performed on 4 µm formalin fixed paraffin embedded sections (FFPE) which had been baked in the oven at 60 ⁰C for 2 hours.
FFPE sections for pAMPKα (2535, Cell Signaling) and pPDHA1 (ab177461, Abcam) staining were loaded into an Agilent pre-treatment module for dewaxing and heat induced epitope retrieval (HIER) using high pH target retrieval solution (TRS) (K8004, Agilent). Sections were heated to 97⁰C for 20 minutes in high TRS buffer. Sections were then rinsed in flex wash buffer (K8007, Agilent) and loaded onto the Agilent autostainer link48. The sections underwent peroxidase blocking (S2023, Agilent) for 5 minutes and were rinsed with flex wash buffer before applying primary antibody to the sections at a previously optimised dilution (pAMPKα, 1:75; pPDHA1, 1:100) for 35 minutes. The sections were washed with flex wash buffer before application of rabbit envision secondary antibody (K4003, Agilent) for 30 minutes. Sections were rinsed with flex wash buffer before applying Liquid DAB (K3468, Agilent) for 10 minutes. The sections were washed in water and counterstained with haematoxylin z (RBA-4201-00A, CellPath).
FFPE sections for Caspase 3 (9661, Cell Signaling), Glut-1 (GT12-A, Alpha Diagnostics) and Ki67 (12202, Cell Signaling) investigation were stained on a Leica Bond Rx autostainer undergoing on-board dewaxing (AR9222, Leica) and antigen retrieval using ER2 solution (AR9640, Leica) for 20 minutes at 95°C. Sections were rinsed with Leica wash buffer (AR9590, Leica) before peroxidase block was performed using an Intense R kit (DS9263, Leica). FFPE sections were rinsed with wash buffer and primary antibodies applied at a previously optimised dilution (Caspase 3, 1:500; Glut-1, 1:75; Ki67, 1:1000). The sections were rinsed with wash buffer and rabbit envision secondary antibody applied for 30 minutes. The sections were rinsed with wash buffer, visualised using DAB and then counterstained with Haematoxylin in the Intense R kit. To complete the IHC staining sections were rinsed in tap water, dehydrated through graded ethanol’s and placed in xylene. The stained sections were coverslipped in xylene using DPX mountant (CellPath, UK).
IHC Image Analysis
Slides were scanned at x 20 magnification using Leica Aperio AT2 instrument and analysed using HALO image analysis platform (Indica Labs, Albuquerque, NM, US). HALO CytoNuclear v1.6 macro, tuned to identify negative (N) and weakly (W), moderately (M) or strongly (S) DAB-stained cells. H-score, defined below, was reported:
Statistical Analysis
Prism 9.0 (GraphPad) was used to perform statistical analysis and to plot the data. In figures, error bars represent one standard deviation. P value classifications are summarized as follows: ns, P>0.05; *, P∈(0.01–0.05 〉; **, P∈(0.001–0.01 〉; ***, P<0.001.