Patient characteristics and enrollment in the VELO trial. Between March 2019 and April 2022, 68 RAS WT mCRC patients with disease progression after two lines of therapy were screened and assessed for eligibility. Sixty-two patients [intention to treat (ITT) patient population] were enrolled and randomly assigned (1:1) to receive panitumumab plus trifluridine/tipiracil (arm B, 31 patients) or trifluridine/tipiracil alone (arm A, 31 patients) (Fig. 1). Baseline demographic and disease characteristics were balanced between the two arms (Table 1). The median age was 66 years (range, 32–82) and 65 years (range, 39–81), in arms A and B, respectively. Performance status was 0 in the majority of patients (22/31, 71.0% and 21/31, 67.7%, in arms A and B, respectively). According to the site of primary tumor localization, the majority of cancers were in the left colon and rectum (27/31, 87.1%, and 28/31, 90.3%, in arms A and B, respectively). The primary tumor was resected in the majority of patients in both arms (25/31, 80.6% and 26/31, 83.9%, in arms A and B, respectively). In the majority of patients, metastatic disease was detected at the time of diagnosis (21/31, 67.7% in arm A and 22/31, 71.0% in arm B) (Table 1).
All 62 patients had received first-line treatment with chemotherapy (FOLFIRI or FOLFOX) plus an anti-EGFR monoclonal antibody [panitumumab in 23/31 (74.2%) patients in arm A and in 21/31 (67.7%) patients in arm B; or cetuximab in 8/31 (25.8%) patients in arm A and in 10/31 (32.3%) patients in arm B]. All 62 patients had achieved objective response (complete or partial response, CR or PR) as best response from first-line treatment. As per protocol, after progression during first-line treatment, all patients were treated with second-line therapy (FOLFOX or FOLFIRI plus bevacizumab or aflibercept) without EGFR inhibitors with an anti-EGFR drug-free interval of at least four months or more (Supplementary Materials Appendix 1 and 2).
Although results of liquid biopsy were not required for patient randomization and for treatment allocation, plasma was collected from all 62 patients at baseline and liquid biopsy analysis was performed by using Idylla™ Biocartis platform [threshold for positivity, variant allele fraction (VAF) ≥ 5%] for detecting in the plasma circulating tumor (ct) DNA activating hot spot mutations in KRAS and NRAS (exons 2, 3 and 4) genes and BRAFV600E mutation, that are known as major cancer cell resistance mechanisms to anti-EGFR therapies in mCRC8,21. No BRAFV600E mutations were found. Baseline plasma RAS/BRAF WT ctDNA was observed in 23/31 (74.2%) patients in arm A and in 26/31 (83.9%) patients in arm B; whereas RAS mutations were found in 8/31 (25.8%) and in 5/31 (16.1%), respectively (Table 1).
Clinical activity of panitumumab plus trifluridine/tipiracil as compared to trifluridine/tipiracil monotherapy. In both arms, therapy was administered until treatment failure (disease progression). No patient stopped therapy for unacceptable toxicity. At the data cut off on September 16th, 2022, the median number of cycles that were administered was 4 cycles (range, 1–26) in arm B, while it was 2 cycles (range, 1–10) in arm A (Table 2A). One patient in arm A (from 9.5 months) and 2 patients in arm B (from 5.5 and 11 months) were still on treatment.
Treatment-emergent adverse events of any cause occurred in 30/31 (97%) patients in arm B and in 24/31 (77%) patients in arm A. Grade 3–4 treatment-related adverse events occurred in 16/31 (52%) patients in arm B and in 9/31 (29%) patients in arm A (Table 2B). There were no treatment-related deaths and no treatment discontinuation was reported. Hematologic and non-hematologic toxicities were similar in terms of occurrence and grade between the two arms (P = 0.80 and P = 0.45, respectively). However, anti-EGFR drug-related skin toxicities were only observed in the combination treatment arm as compared to trifluridine/tipiracil monotherapy (P = 0.0001). Dose reductions were necessary in 16/31 (52%) patients in arm B and in 9/31 (29%) patients in arm A (P = 0.07) (Table 2B).
The primary endpoint of the study was PFS in the 62 ITT patient population. The primary endpoint was met. In fact, treatment with panitumumab plus trifluridine/tipiracil determined a better PFS as compared to standard-of-care trifluridine/tipiracil monotherapy with 52% reduction in the risk of progression [hazard ratio (HR): 0.48; 95% confidence interval (CI) 0.28–0.82; P = 0.007]. Median PFS was 2.5 months (95% CI 1.36–3.63) in arm A, while it was 4.0 months (95% CI 2.75–5.26) in arm B (Fig. 2A).
Objective responses, such as PR and CR, as well as disease control rate (DCR: PR + CR + stable disease, SD, of 4 months or more) were secondary endpoints of the trial. In the 62 ITT patient population, no CR was reported. Confirmed PRs were observed only in arm B (3/31 patients; 9.7%). Disease control rates were 74.2% in arm B as compared to 38.7% in arm A (P = 0.009) (Fig. 3A). In addition, PFS rates at 6 and at 12 months were significantly higher in patients that were treated with panitumumab plus trifluridine/tipiracil (6 months PFS rate: 9.7% versus 35.5% in arms A and B, respectively; P = 0.016; 12 months PFS rate: 0% versus 12.9% in arm A and B, respectively; P = 0.040) (Fig. 3D). Unfortunately, disease progression was reported as the best response in the majority of patients in arm A (19/31, 61.3%); whereas it was observed in 8/31 (25.8%) patients in arm B.
Clinical activity of panitumumab plus trifluridine/tipiracil in baseline plasma RAS/BRAF WT ctDNA patients. We next evaluated if mutation profiling of baseline plasma ctDNA could allow to better identify patients that would benefit more of anti-EGFR rechallenge therapy with panitumumab plus triflirudine/tipiracil as compared to those treated with trifliridine/tipiracil alone. In a pre-specified subgroup analysis of clinical activity in patients with baseline plasma RAS/BRAF WT ctDNA disease, median PFS was 4.5 months (95% CI 2.21–6.78) in arm B (26 patients) versus 2.6 months (95% CI 0.98–4.27) in arm A (23 patients) (HR: 0.48; 95% CI 0.26–0.89; P = 0.019) (Fig. 2B). No RAS mutations were detected in baseline plasma ctDNA from the 3 patients that achieved a confirmed PR in arm B. Further, DCR was 80.7% in baseline plasma RAS/BRAF ctDNA WT patients that received panitumumab plus trifluridine/tipiracil compared to 47.8% in patients treated with trifluridine/tipiracil (Fig. 3B). The probability of being free from progression at landmark time points was also higher in baseline plasma ctDNA RAS/BRAF WT patients that were treated with panitumumab plus trifluridine/tipiracil (6 months PFS rate: 38.5% versus 13.0% in arms B and A, respectively; P = 0.047; 12 months PFS rate: 15.4% versus 0% in arm B and A, respectively; P = 0.052) (Fig. 3D and 3E). On the contrary, treatment was less active in both arms in patients with baseline plasma RAS mutant ctDNA disease with no advantage by adding panitumumab to trifluridine/tipiracil (HR: 0.72; 95% CI 0.15–1.75; P = 0.29) (Fig. 2C).
Extended molecular profiling by next generation sequencing analysis of baseline plasma ctDNA. The analysis of plasma ctDNA by using Idylla™ Biocartis platform suggested that patients that had no detectable plasma ctDNA RAS/BRAF mutations at the time of anti-EGFR rechallenge therapy would experience relevant clinical benefit by treatment with panitumumab plus trifluridine/tipiracil; thus highlighting the predictive value of liquid biopsy as a tool to inform therapeutic decisions in this setting. To explore if the use of a comprehensive genomic profiling by next generation sequencing (NGS) could help to identifying additional cancer cell resistance mechanisms to anti-EGFR drugs in order to better tailoring rechallenge treatment, a panel of 324 genes was evaluated with the use of FoundationOne Liquid CDx, that was performed on baseline plasma samples in 46/62 (74.2%) patients (Fig. 1). The complete list of gene alterations that were found is presented in Supplementary Table 1. Complete concordance for hot spot KRAS and NRAS mutations was observed between baseline plasma ctDNA analysis that was performed with Idylla™ Biocartis platform and FoundationOne Liquid CDx results. RAS WT ctDNA was confirmed in 39 patients and RAS mutant ctDNA was confirmed in the other 7 patients, in which FoundationOne Liquid CDx analysis was done. Collectively, extended molecular profiling by baseline NGS liquid biopsy was avalaible for 16/23 (69.6%) patients with RAS/BRAF WT ctDNA in arm A and for 23/26 (88.5%) patients with RAS/BRAF WT ctDNA in arm B. NGS analysis found that KRAS, PIK3CA, BRAF, MAP2K1, EGFR and ERBB2 were among the most frequently mutated genes within the EGFR pathway, whereas TP53, APC, ARID1A, and SMAD4 were the most frequently mutated tumor suppressor genes (Supplementary Table 1). APC and TP53 mutations were found in almost all patient samples (93% and 92% of cases, respectively).
We next focused on baseline plasma RAS/BRAF WT ctDNA mCRC patients in order to find additional resistance mechanisms which were not detectable by PCR-based analysis by Idylla™ Biocartis platform. A schematic representation of additional gene mutations, that were detected by FoundationOne liquid CDx, is illustrated in Fig. 4 for each individual patient according to PFS. For patients that were treated with trifluridine/tipiracil alone, no clear evidence of specific gene alterations that could be associated with cancer cell resistance was observed. Mutations and/or amplifications in the EGFR pathway were found independently of PFS duration (Fig. 4A). In contrast, for patients that were treated with panitumumab plus trifluridine/tipiracil, additional gene alterations, which could be responsible for cancer cell resistance to anti-EGFR drugs, were detected (Fig. 4B). In this respect, KRASQ61L mutation was found in patient 66. NGS analysis of baseline plasma ctDNA identified two mutations: KRASG12S (at low VAF) and ERBB2G776V in patient 60. ERBB2V777L gene amplification was found in patient 49. KRAS gene was amplified in patient 54. PIK3CA E542K mutation was found in patient 58. EGFRG465E mutation was detected in patient 52. Finally, BRAFV600E mutation (that was not detected by analysis with Idylla™ Biocartis platform since it was below its detection limit) was found together with MAP2K1K57T, PIK3CAE542K and ARID1A splice site 4101 + 1G > A mutations in patient 39. However, a long PFS (13.5 months) was observed in patient 3, in whose baseline plasma ctDNA KRASQ61R and PIK3CAG1049R mutations were found, suggesting that not all KRAS and PIK3CA mutations are necessarily correlated with cancer cell resistance to EGFR inhibitors (Fig. 4).
Extended molecular profiling by next generation sequencing analysis of plasma ctDNA before and after therapy. To detect cancer cell resistance mutations, which could raise during therapy, an exploratory analysis was performed on 24 plasma RAS/BRAF WT ctDNA patients (13 in arm A and 11 in arm B) for whom FoundationOne Liquid Cdx was available both at baseline and at disease progression (Fig. 5 and Supplementary Table 2). Of note, the acquisition of one or more mutations in the EGFR pathway were found in the post-progression liquid biopsy analysis of 6/11 patients treated with panitumumab plus trifluridine/tipiracil for the following genes: KRAS (4 patients), EGFR (3 patients), BRAF (3 patients), MAP2K1 (1 patient), and PIK3CA (1 patient).