2.1 Materials, bacteria strains, and reagents
P. vannamei were purchased from a commercial supermarket (New Huadu) in Xiamen, China, whereas nutrient broth (NB) medium, SPI, soybean oil, and agar were obtained from Lablead Biotechnology (Lablead Biotechnology Co., Beijing, China). Sodium chloride (NaCl), mass spectrometry grade trypsin, acetonitrile, and formic acid, as well as urea, propidium iodide (PI), green fluorescent nucleic acid stain (STOY-9), phosphate buffer solution (PBS), pentanediol, ethanol, acetone lead citrate, and uranyl acetate were all purchased from Solarbio (Solarbio Technology Co., Beijing, China). Staphylococcus aureus (ATCC 27217), Escherichia coli (ATCC 15224), Vibrio parahaemolyticus (ATCC 17802), and Bacillus cereus (ATCC 14579) are all bacteria strains collections in the Key Laboratory of Microbiology and Enzyme Engineering of Fujian Province, Jimei University, Xiamen, China. All bacteria were cultured in NB medium at 37°C.
2.2. Salt fermentation of P. vannamei and screening of isolated peptides with antimicrobial potential.
P. vannamei were cleaned before being placed in 20% NaCl solution for 15 days of natural fermentation. Next, the fermentation broth was collected and centrifuged at 10000 rpm (25°C, 10 min), followed by placing the supernatant in ultrafiltration units (3 kDa, Milipore) and centrifuged at 10000 rpm for 20 min (4°C). The filtrate samples were then digested with trypsin overnight at 37°C. After the samples were desalted using a small C18 column, they were injected into an ultra-performance liquid chromatograph-mass spectrometer (UPLC-MS) for analysis. The injection volume was 5.0 µL, mobile phase A was 0.1% formic acid in water, and B was acetonitrile. The gradient elution program was as follows: 0–1 min, 98% A; 1–55 min, 98% -70% A; 55–60 min, 70% -10% A. The mass spectrometry (MS) conditions were set to spray voltage: 3.0 kV; capillary temperature: 300°C. The scan mode was positive ion, primary scan: resolution 70,000, range 350–1600 m/z; secondary scan: resolution 17500. The MS data were searched against the Penaeus vannamei database in Uniprot (http://www.uniprot.org) with the Maxquant software (v1.6.5.0). The charge and hydrophobicity of the peptides were calculated using the online APD3 software (http://aps.unmc.edu/AP/).
2.3 Molecular docking prediction of SPI and AMPs interactions
The interaction between SPI and AMPs was predicted by molecular docking. Crystal structures of 7S (coded 3AUP) and 11S (coded 2D5F) proteins were obtained from the protein data bank (PDB) (http://www.rcsb.org/). The optimization of AMPs structures was performed by ChemBio Draw U1tra 14.0 software, and molecular docking was performed using Maestro software (version 11.1.012), while the docking results were visualized using Pymol software (version 1.6). The SPI was set as rigid molecules, while AMPs were set as flexible molecules whose torsion, position, and orientation were set randomly (Ao et al., 2021).
2.4 Determination of antibacterial activity
Peptide SA6 was synthesized by a commercial company (Scilight Biotechnology Co., Beijing, China) using the Fmoc solid-phase synthesis method, followed by purification to more than 99% purity and molecular weight determination using liquid chromatography-mass spectrometry (LC-MS), as previously described (Huertas et al., 2017).
The minimum inhibitory concentrations (MIC) of peptide SA6 against S. aureus, B. cereus, V. parahaemolyticus, and E. coli were determined using the plate colony counting method (Mookherjee et al., 2020). Briefly, bacteria were incubated in nutrient broth (NB) at 37°C for 12 h before diluting to 103 CFU/mL in sterile PBS. Next, the diluted bacteria and peptide SA6 (in sterile PBS) were mixed in equal volumes and incubated at 37°C for 2 h. After 2 h incubation, 20 µL of the samples were spread on glass petri dishes and incubated at 37°C for 24 h. The MIC was defined as the peptide concentration that inhibited 80% of bacterial growth.
Time-kill curve analysis of peptide SA6 against S. aureus was performed as described previously (Yang et al., 2020). Briefly, SA6 diluted to different concentrations (1/4×MIC − 4×MIC) was mixed with diluted S. aureus (103 CFU/mL) and incubated at 37°C for 0, 1, 2, 3, 4, and 5 h. Next, 20 µL of samples were uniformly spread on glass petri dishes and incubated at 37°C for 24 h. Negative control samples were treated the same way but with sterile PBS in place of peptide SA6. The number of colonies was counted and recorded.
To evaluate the bacteriostatic properties of SPI Pickering and SPI-SA6 Pickering emulsions during storage, these Pickering emulsions were mixed with an equal volume of diluted S. aureus (103 CFU/mL) and incubated at 37°C. Next, 20 µL of the samples were evenly spread onto glass petri dishes at different time points (0, 1, 2, 3, 4, and 5 d), and the Petri dishes incubated at 37°C for 24 h. The bacteria were then observed, and the number of colonies counted (Li et al., 2018).
2.5 Determination of particle size, zeta potential, and interparticle interaction of SPI-SA6 particles
The SPI-SA6 particles were prepared as previously reported (Yi et al., 2021). Briefly, SPI was dissolved in ultrapure water (1.0%, w:v) and ultrasonicated for 40 min using a JY92-IIDN ultrasonicator (Ningbo Xinzhi Biotechnology, Ningbo, China). Next, SA6 was dissolved in the SPI solution and stirred magnetically for 2 h at room temperature. The particle size and zeta-potential of SPI and SPI-SA6 were diluted 1000 times before being measured using a laser nanoparticle sizer (Brookhaven Instruments Co., Holtscille, USA) at 25°C with an equilibration time of 120 s. The pattern of interparticle interactions was determined by the relative change in the average particle size of SPI-SA6 dispersions in 6 M urea solution. To do this, SPI and SPI-SA6 were diluted to 0.1% (w:v), and the mean particle size of SPI and SPI-SA6 were analyzed using a laser nanoparticle sizer. Samples were kept at ambient temperature for 30 min before testing (Liu & Tang, 2014).
2.7 Preparation of emulsion and observation of emulsion droplets
The emulsion was prepared as previously described (Li et al., 2019). Briefly, soybean oil was added to SPI and SPI-SA6 (oil to water ratio of 7:3), and fresh emulsions obtained using a high-speed shear emulsifier (high-speed homogenizer (FA25, Fluko, Shanghai, China) operated at 12000 rpm for 2 min. The distribution patterns of SPI Pickering and SPI-SA6 Pickering emulsions were observed under an optical microscope (Motic BA240, Motic Deutschland GmbH, Wetzlar, Germany).
The stability of the SPI and SPI-SA6 emulsions was observed by the creaming index. Briefly, 10 mL of each SPI Pickering and SPI-SA6 Pickering emulsions were added into colorimetric tubes and kept at room temperature for 7 d. The appearance of the emulsions was observed and recorded daily for delamination and surface oiling (Ge et al., 2017).
2.8 Rheological Measurements
The dynamic viscoelasticity of the SPI Pickering and SPI-SA6 Pickering emulsions was measured using a rotational rheometer TA Instruments (DHR-2, TA Instruments, New Castle, USA) based on a previously described procedure (Zhang et al., 2021). The linear viscoelastic zone of the emulsions was determined by placing the appropriate amounts of SPI Pickering and SPI-SA6 Pickering emulsions on the sample table using a 40.0 mm diameter plate. The plate spacing was 1 mm, the constant shear frequency was 1 Hz, and the temperature was 25°C, with the strain scanning performed at 0.01–100% of shear strain. A constant shear strain value in the linear viscoelastic zone was selected. The frequency scan was performed at 0.1–10.0 Hz to obtain the variation curves of the elastic modulus (G′) and viscous modulus (G″).
2.9 Emulsion particle size measurement
The particle size distribution and average particle size of SPI Pickering and SPI-SA6 Pickering emulsions were measured using a laser particle size analyzer (BT-9300HT, Better, Dandong, China) according to a previously described method (Li et al., 2020). Deionized water was used as a dispersant (1.330) and a refractive index of 1.471 for the emulsions. All emulsion samples were diluted 100 times with PBS to avoid dynamic light scattering.
2.10 Flow cytometer measurements
A flow cytometer technique was used to determine bacteria (S. aureus) survival as previously described (Osman et al., 2019). Briefly, bacteria were treated with PBS, SA6, SPI Pickering, and SPI-SA6 Pickering emulsions. The SA6 treated bacteria were incubated at 37°C for 2 h, while the other samples were incubated at 37°C for 24 h. Bacteria treated with PBS were used as the negative control. Next, the treated bacteria were suspended in PBS and washed three times before being stained with 5 µL PI (1 mg/mL) and SYTO-9 at 37°C for 20 min. Samples were analyzed using a BD FACSCANTO II flow cytometer (Becton Dickinson, San Jose, CA, USA), with excitation/emission wavelengths of 490/635 nm for PI and 480/500nm for SYTO-9.
2.11 Transmission electron microscopy (TEM) observation
Bacteria ultrastructure was observed using TEM according to a previously described method (Xia et al., 2013). Briefly, bacterial suspensions (103 CFU/mL) were mixed with SA6, SPI, SPI Pickering, and SPI-SA6 Pickering emulsions before being incubated at 37°C for 2 h, and then centrifuged at 2700 g (25°C, 2 min). The precipitates were washed three times with PBS, fixed with 0.27 mM glutaraldehyde solution, and dehydrated with ethanol (30%-100%). Ultrathin sections were stained with lead citrate and uranyl acetate before being observed on the H-7650 TEM instrument (Hitachi, Tokyo, Japan).
2.12 Statistical analysis
All experiments were performed at least three times, and data are presented as mean ± standard deviation. One-way ANOVA and Duncan's multiple comparison statistical analysis were performed on the data using SPSS software (22.0) and GraphPad Prism software (version 8.3). Statistical significance was considered at p < 0.05.