Primer ID
|
Primer sequences (5-3')
|
SNP type
|
Size(bp)
|
SNP position
|
PIC
|
H0
|
He
|
PHWE
|
SNP 1
|
F:ACGTTGGATGGTATATAGACTTCTTGCAC
R:ACGTTGGATGCCTCACCTGCTCAGGTAGAA
EXT:cctagATAGACTTCTTGCACAATTTT
|
A/G
|
139
|
75
|
0.375
|
0.3333
|
0.5
|
1
|
SNP 2
|
F:ACGTTGGATGAACAGGCTCTACAAGAAGCA
R:ACGTTGGATGACATTGGTTCCAGTGTGTGC
EXT:ggCAAGAAGCATTTAGATTGAAAATA
|
G/A
|
140
|
73
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 3
|
F:ACGTTGGATGTACCAAGTATGTGAGCCCTG
R:ACGTTGGATGGCACATGACATCAGCAGTGG
EXT:GTGAGCCCTGGCTGTAAG
|
C/A
|
140
|
83
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 4
|
F:ACGTTGGATGAACACATTGCTCGCTTCACG
R:ACGTTGGATGTCACGAAACGCTCCAGCTTC
EXT:ggggtCTTCACGTGGAGGGAAACTC
|
T/G
|
140
|
88
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 5
|
F:ACGTTGGATGTATAGACCGTTGTACCGGTG
R:ACGTTGGATGCACTTTTTTGAAACCTCTGG
EXT:GGTGTGTATTCAAAGAAAAATGA
|
C/T
|
139
|
65
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 6
|
F:ACGTTGGATGTTCACCCCAAATTGCTCCTG
R:ACGTTGGATGTTAGCCTGCACCCACATTAC
EXT:acATGTCATTCGCTTTGGAT
|
A/G
|
139
|
76
|
0.375
|
1
|
0.5
|
1
|
SNP 7
|
F:ACGTTGGATGCAACATTGTGTTTTGTTGT
R:ACGTTGGATGTGTGGCTAGTTAGCATGTCC
EXT:aatttTGTTTTGTTGTTATTGTTTGC
|
G/A
|
139
|
78
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 8
|
F:ACGTTGGATGCATTGCTTTGCCCTACACAG
R:ACGTTGGATGCACCACTTTAGCTGGAAGAG
EXT:ATGTGCTTCCATACACT
|
T/A
|
139
|
70
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 9
|
F:ACGTTGGATGAGACTCTGTGTCTTCTGAGC
R:ACGTTGGATGACAGGCCCCTCTACTTTTGG
EXT:CTGGAGGTGAAGCTGAC
|
T/G
|
140
|
74
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 10
|
F:ACGTTGGATGCAGAAACCATCTACACGTCC
R:ACGTTGGATGTCCCTGCTGAAGATGGATAG
EXT:atAAACTCTCATTGTCTATTTCTG
|
G/A
|
139
|
72
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 11
|
F:ACGTTGGATGTCATTCTGGGATCAAATGGC
R:ACGTTGGATGTTTATGCTCTGGAAGTGGCG
EXT:gcTCAAATGGCTTTATTGCCCC
|
T/C
|
139
|
82
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 12
|
F:ACGTTGGATGGTTGAGAGCACATTTTTTGCC
R:ACGTTGGATGGCTCATTGGTGTCGTGTTTC
EXT:gggagAGGCAAATAAGAACCGCT
|
C/T
|
139
|
84
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 13
|
F:ACGTTGGATGGAACTGATTATAAGTTGTTTC
R:ACGTTGGATGGTCGCGACATCTTTGCCAAT
EXT:ACAGTAAATATTCAAAGTGAAATATC
|
C/G
|
140
|
55
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 14
|
F:ACGTTGGATGCGTTATGTGTCAAGTCACAG
R:ACGTTGGATGGCATCAGATTTGCTCCTGTG
EXT:aAGTCTATTTACATACACCACAT
|
G/A
|
140
|
55
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 15
|
F:ACGTTGGATGTACTAGCTGCCAAAGTCTCC
R:ACGTTGGATGATCTACCTGAGTGAGAACGC
EXT:caacGTCTCCACCATCCTGTGAC
|
A/G
|
139
|
75
|
0.375
|
0.5
|
0.5
|
1
|
SNP 16
|
F:ACGTTGGATGATCTGTGTTCTCTCAGGGTC
R:ACGTTGGATGATCTCCTTCAGCACCAGCAG
EXT:GGCAGCACTCAGAACAAAGG
|
C/A
|
140
|
59
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 17
|
F:ACGTTGGATGTCACTCTGAAACGACGTCTG
R:ACGTTGGATGTCTAAAGGGTCTCCAGTCAG
EXT:tTTGATGAAGCCACGTGC
|
G/A
|
139
|
91
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 18
|
F:ACGTTGGATGGCCTTTCTTCCAGCCATTTC
R:ACGTTGGATGCCGCATACTCTCACACAGTC
EXT:caATTTCACGCCCTCCTGT
|
A/C
|
140
|
86
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 19
|
F:ACGTTGGATGAGAGGCCATATGCCCCAAAG
R:ACGTTGGATGTCAGTGGTGTTTGCACTCAG
EXT:acacGCCCCAAAGGCCATTTTTCAT
|
C/G
|
139
|
71
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 20
|
F:ACGTTGGATGTCTGGAGAGACAGTCTTGAG
R:ACGTTGGATGTGCTGCATTTATGAAAAGGG
EXT:ACAGTCTTGAGCATTTTCT
|
A/G
|
139
|
83
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 21
|
F:ACGTTGGATGAACGACGTACCTTAGCTCTC
R:ACGTTGGATGAATTTGCCTCTCCATCTCCG
EXT:tccccACCAGAGCTACCTATCGACGGC
|
T/G
|
139
|
67
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 22
|
F:ACGTTGGATGCACACTTCACAGATGGTCTC
R:ACGTTGGATGAAACACGCCATGACGCGTTG
EXT:TGGTCTGTTTTACTCCGTG
|
T/G
|
139
|
67
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 23
|
F:ACGTTGGATGTTGACTTGCATAGAGCTCCC
R:ACGTTGGATGGGTTTCTCATACAGCATCTC
EXT:cctatCTCCAACAAGCCGTTTAGGA
|
T/C
|
139
|
90
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 24
|
F:ACGTTGGATGTGTGCATGATTCCCTCGAAG
R:ACGTTGGATGGGCTTGCACAATTACTAATG
EXT:tgcagGATTCCCTCGAAGATATCTAT
|
G/C
|
139
|
73
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 25
|
F:ACGTTGGATGTCACCCACTTAGTTCCTCTC
R:ACGTTGGATGAGAGGGATCTCACACACTGG
EXT:ccccCTTAGTTCCTCTCCTTTGCTAC
|
G/A
|
140
|
79
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 26
|
F:ACGTTGGATGGGGTCTGATGGATCTGAAAC
R:ACGTTGGATGCCGGGTTCATCTACTACAAG
EXT:TGAAAGTGAGCTGCTTCACC
|
C/A
|
140
|
77
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 27
|
F:ACGTTGGATGTGGATCCGGCCTAATGTTTC
R:ACGTTGGATGCTGAGACTATCAGCAAAAAC
EXT:cccccGCCTAATGTTTCTCGTGAA
|
T/G
|
140
|
67
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 28
|
F:ACGTTGGATGAAACCAATAAACAGCCCGCC
R:ACGTTGGATGCGTCAATGATCCGCCTTTTG
EXT:ccccaCCTTTTGAGAGCAGCTAC
|
T/C
|
140
|
73
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 29
|
F:ACGTTGGATGAAGTCTACTCAGCATGTCAC
R:ACGTTGGATGTGCTGTAAACCTGTAGCTTG
EXT:TCAGCATGTCACTATCAACACA
|
T/C
|
139
|
72
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 30
|
F:ACGTTGGATGCACTGACTCCAAGGAATACG
R:ACGTTGGATGAGAGCAACATGACCTCTGCG
EXT:cactCCTCAGATTTGGGTGAACTCAT
|
T/G
|
139
|
89
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 31
|
F:ACGTTGGATGCAGGAGATGATCTTCTTCAG
R:ACGTTGGATGTGATGGTCCATCGCTCTCAG
EXT:tctagGATCTTCTTCAGGAGCGA
|
G/T
|
140
|
51
|
0.375
|
0.5
|
0.5
|
1
|
SNP 32
|
F:ACGTTGGATGGAACCAACAACAGTTTTGGAC
R:ACGTTGGATGGAGCCAGAGAGGGAAGCAT
EXT:TGTGTCTTGATAAATACTTTTTTGT
|
T/C
|
139
|
83
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 33
|
F:ACGTTGGATGCAAATAAAACACAGAACAGC
R:ACGTTGGATGCCGACAACAACGTCTAACAG
EXT:aaaccCAGAACAGCAGCAGATT
|
G/C
|
139
|
85
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 34
|
F:ACGTTGGATGGCCATCAGCTGGAAAAACAC
R:ACGTTGGATGCCAACTCTGTTACACAAGAC
EXT:cccccGCACATTCCACAATCCA
|
A/C
|
140
|
78
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 35
|
F:ACGTTGGATGTAACATATGTGGCCTCACTG
R:ACGTTGGATGGGAAATTAGCTGCTACACGG
EXT:gggcCACAGCTAAGTTCAGTTG
|
G/C
|
139
|
91
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 36
|
F:ACGTTGGATGTATACTAAGAGTGTGTGGTG
R:ACGTTGGATGTCTTGTACTTTTGATTCCGC
EXT:ATTGAAAACTAAAAATGGTGTCT
|
G/A
|
140
|
86
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 37
|
F:ACGTTGGATGAATGCTCAAGGAAACCCACG
R:ACGTTGGATGTGCGCACATTTTCCTTGGAG
EXT:GCCCAGACTTCAGTCCATA
|
C/T
|
140
|
79
|
0.375
|
0.3333
|
0.5
|
1
|
SNP 38
|
F:ACGTTGGATGCACGGACCTATTTTGTTCAC
R:ACGTTGGATGCATCCGCATAACAATGAAAG
EXT:GCTTCCGTTAGGCAATATTATA
|
C/T
|
140
|
52
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 39
|
F:ACGTTGGATGGTCCATTTGATAAGCCACAG
R:ACGTTGGATGTGCGGGACACACTATACTAC
EXT:gggcTAAGCCACAGTAAACCGCC
|
A/C
|
140
|
89
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 40
|
F:ACGTTGGATGACTGATATGGAGTTGGAGGC
R:ACGTTGGATGACTAACCTCAGCTGGAATGG
EXT:tggGTTGGAGGCGGCATCAGGCGT
|
T/G
|
139
|
87
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 41
|
F:ACGTTGGATGTTTCGCTCTCCGGACACTTC
R:ACGTTGGATGAGGGAAGGGAGTTCCTGTTC
EXT:caGTGCGTCCATGTTTATATTCTCTC
|
T/G
|
140
|
72
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 42
|
F:ACGTTGGATGTGCCAAAAACACTCCTCTCC
R:ACGTTGGATGCTTTCCTTGAGGACAAAGTG
EXT:CGCACAGAAACAAACAA
|
T/A
|
140
|
75
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 43
|
F:ACGTTGGATGGACCCTGTACTCCCTCATTC
R:ACGTTGGATGTGTGTGAGACTGAGAAAGCG
EXT:ATTCCTCCGCAGCCCCC
|
G/A
|
140
|
81
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 44
|
F:ACGTTGGATGTTCCCTGGTTTCAACAGCAC
R:ACGTTGGATGACACAGCGCATGTTCGTTTC
EXT:cGAGATGCGCAAGTGTTAC
|
G/T
|
140
|
78
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 45
|
F:ACGTTGGATGAAAGGTCAAGCAGTTTCGCC
R:ACGTTGGATGAAACAGCCGGGTCTGCGTA
EXT:gttcCGCCGCTGCCATGGAGACGC
|
G/T
|
140
|
60
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 46
|
F:ACGTTGGATGATGAGGTATGTTCCCTGGAC
R:ACGTTGGATGCCAGAGAAAATGCTTTGCAG
EXT:ggttGGAAACATGTTTTTTCCAGAT
|
G/T
|
140
|
77
|
0.345667
|
0
|
0.4444
|
0.2
|
SNP 47
|
F:ACGTTGGATGCGAAGTTTCTGCTCATGCTG
R:ACGTTGGATGATAACGCCTCCATCGTCGTG
EXT:cgGCTCATGCTGTAGACGG
|
C/T
|
140
|
82
|
0.375
|
0.3333
|
0.5
|
1
|
SNP 48
|
F:ACGTTGGATGTTTTTCTGTCGTTGCGTCCC
R:ACGTTGGATGTTCAGGCTCACAGGCTGGTC
EXT:TTGCGTCCCATCAGATCTTT
|
C/T
|
140
|
76
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 49
|
F:ACGTTGGATGGGGTTTTGGTTGAGGATGAG
R:ACGTTGGATGCTCCCGCTATTGCTTGTTTC
EXT:TTGAGGATGAGAGGCCG
|
G/T
|
140
|
77
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 50
|
F:ACGTTGGATGCTGTATCCTGTTGAAGAAACC
R:ACGTTGGATGAAGAACAAGAACTGCACCGC
EXT:acataCTGTTGAAGAAACCCAATAA
|
T/A
|
139
|
62
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 51
|
F:ACGTTGGATGGCAAAGGATCACAAGATGCG
R:ACGTTGGATGTCTCTTCTTTCGTACCTAAC
EXT:AGATGCGTTTTGACGGTTG
|
T/C
|
139
|
72
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 52
|
F:ACGTTGGATGTAGTTCTGTCCATTTGGCCG
R:ACGTTGGATGACCATCTGCACTCAGAAGAG
EXT:CATTTGGCCGTAATCCCC
|
A/T
|
139
|
80
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 53
|
F:ACGTTGGATGTGATTGGTCGCCTGACTTTG
R:ACGTTGGATGTTGGTTGCGATCAGATTCAC
EXT:gcaGGCGCTCGGAAGTTCCT
|
G/A
|
140
|
75
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 54
|
F:ACGTTGGATGGTGACACAGTTGCAGAATCC
R:ACGTTGGATGATGCTGACGGAGCACTGAGA
EXT:GAGCCAATCAGAGAGTG
|
G/A
|
140
|
90
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 55
|
F:ACGTTGGATGGAGCTGAACATTTGAGAGG
R:ACGTTGGATGAGCGAGACACGAGACAATTC
EXT:aACTGATCTTGTATTTGGAAAGC
|
G/T
|
140
|
78
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 56
|
F:ACGTTGGATGGCTGGTTTCTTGAGCATGTG
R:ACGTTGGATGCTGAGGTGTTGGTGCTTTTC
EXT:ggggTTCTTGAGCATGTGCATCTAA
|
C/A
|
139
|
71
|
0.358887
|
0.75
|
0.4688
|
1
|
SNP 57
|
F:ACGTTGGATGTCATTCAACTTTGGCGACGG
R:ACGTTGGATGAAATCCTGCGTCTTGAAGCC
EXT:acgcCGGTATTACAGTATCTCTCCC
|
T/C
|
139
|
86
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 58
|
F:ACGTTGGATGTTGAGCACGCTTTTTCTCAG
R:ACGTTGGATGTCACAGCGAAGTCTCTGTAG
EXT:TTCTCAGTTATCTTATCTAAGGATA
|
C/A
|
139
|
58
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 59
|
F:ACGTTGGATGAACCTCTGGAAAGCCTGAAG
R:ACGTTGGATGACATGACAATGGGATCTGCG
EXT:TGAAGATGGAGGGTCCT
|
A/C
|
140
|
57
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 60
|
F:ACGTTGGATGTTTACAGCAAGACTATGAGG
R:ACGTTGGATGCACTCTTCACAATTAGGTCC
EXT:GTTGAAAAGAAATGTGTTACA
|
G/C
|
140
|
64
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 61
|
F:ACGTTGGATGATGCACAGCGCACAGGTAAC
R:ACGTTGGATGGCCTGGATTTTTGTCTCCTG
EXT:ggAGGAAGCTGGCTGGCAC
|
A/G
|
139
|
79
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 62
|
F:ACGTTGGATGACTCTCACCTGGACTGTCCT
R:ACGTTGGATGCCGCTAACAGCTGATAAACC
EXT:cctaACCTGAGACTCTGCTAC
|
A/T
|
140
|
73
|
0.375
|
0.3333
|
0.5
|
1
|
SNP 63
|
F:ACGTTGGATGTGCGTGTGCACATCTCTTTG
R:ACGTTGGATGGCTTTATGATGAAGACCACC
EXT:gttTGTCTGTGGTCTTTGAT
|
A/G
|
140
|
54
|
0.375
|
0.5
|
0.5
|
1
|
SNP 64
|
F:ACGTTGGATGTGTGTCGTACAGGTCATCAC
R:ACGTTGGATGGCATGCACCGTATTTCTAGG
EXT:ttAGACCCTTCTTGCTAATAGGA
|
G/T
|
139
|
71
|
0.375
|
0.3333
|
0.5
|
1
|
SNP 65
|
F:ACGTTGGATGAGTTCCGGAAACTTGAGCAG
R:ACGTTGGATGTCACACAGTGTACACATGAC
EXT:GGATGATTTTAGTAGGTTACTC
|
G/T
|
140
|
81
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 66
|
F:ACGTTGGATGCACCTGTGTAGTTTGAGACG
R:ACGTTGGATGTTCCTGGTTACGCGTTGTTG
EXT:ATACTAAAGGTGACGGTG
|
A/C
|
140
|
83
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 67
|
F:ACGTTGGATGAAAGTACGTTATGCTGGCCC
|
G/T
|
139
|
56
|
0.375
|
0
|
0.5
|
0.3333
|
R:ACGTTGGATGTAATACACTACGCAGGGCTC
|
EXT:ggaatGGCCAGCGGGCCATTTA
|
SNP 68
|
F:ACGTTGGATGGCTGATGAAGCCATTTCCTG
R:ACGTTGGATGACTTCCTTCTTGCCAACCAG
EXT:cCCATTTCCTGCTGTCAT
|
G/A
|
139
|
72
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 69
|
F:ACGTTGGATGCCCTACGGTTTTCATTTCCC
R:ACGTTGGATGCATCACTGGCACTGATGAAG
EXT:cccccCCCCTTCATGTCATGAAAGT
|
C/T
|
140
|
72
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 70
|
F:ACGTTGGATGATCCAAGCGTCAACGCATTC
R:ACGTTGGATGGCTTTGGTGTTGCAGTTGTG
EXT:CAACGCATTCAGATTTGATTTTTG
|
C/T
|
140
|
75
|
0.358887
|
0.75
|
0.4688
|
1
|
SNP 71
|
F:ACGTTGGATGGTCTTTGTTTGCTCAGGCGG
R:ACGTTGGATGTATAGGTAATGCGTCCCGAG
EXT:tAGGCGGATCGGGGTCTT
|
A/C
|
140
|
55
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 72
|
F:ACGTTGGATGAGCATGCAGTCCTCAGACAC
R:ACGTTGGATGTCTTCGGAACAACTGGACTG
EXT:ctcccGCAGTCCTCAGACACCGACGCC
|
T/G
|
140
|
76
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 73
|
F:ACGTTGGATGGGAACGTAGATAGACGGATG
R:ACGTTGGATGAGACGTTATGTCGGAACCTG
EXT:gtccTTTACCCAGCCTCTGTTTTT
|
C/G
|
139
|
87
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 74
|
F:ACGTTGGATGATCTGCCCTTTCCTCCCTCT
R:ACGTTGGATGTTCATCCTGGCCTTGCAGAG
EXT:CTCTCCCCCCTCCCCAC
|
C/G
|
139
|
82
|
0.358887
|
0.75
|
0.4688
|
1
|
SNP 75
|
F:ACGTTGGATGATCTCGCTTCATCTTCACGC
R:ACGTTGGATGGAGGTGGTGCCAACAGTATC
EXT:TTTTTCTCCCTACCTTCCAT
|
A/G
|
140
|
87
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 76
|
F:ACGTTGGATGTGGCTGTAAACCACTTGGAC
R:ACGTTGGATGTCAGCCTCCTCTGTGTATTG
EXT:TTACCAATGAACGCCAG
|
G/T
|
140
|
54
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 77
|
F:ACGTTGGATGAGCTGCTGTGCGCAGTTCTC
R:ACGTTGGATGTCCCATAGTACTCACAGGCG
EXT:CGCAAAGGGCTTTCCATAC
|
A/G
|
140
|
61
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 78
|
F:ACGTTGGATGCTACCTCTGGCACTAAAACC
R:ACGTTGGATGTCACTGTGATTGGTCCAAAC
EXT:tcctAGGGCTTTAGGGCCCCTTTATA
|
G/C
|
139
|
80
|
0.358887
|
0.75
|
0.4688
|
1
|
SNP 79
|
F:ACGTTGGATGTCTACTGGTCAATACATGGG
R:ACGTTGGATGCGGGACACACGTTCAAAAAG
EXT:tgcttGTCAATACATGGGACGTAATC
|
G/T
|
139
|
65
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 80
|
F:ACGTTGGATGTTGTAGTTGTAGCCCCCTTG
R:ACGTTGGATGGCCCCATAAAATCGTGGTTC
EXT:ccGCCAGCGATTCTCTCTCTA
|
A/C
|
139
|
77
|
0.375
|
0
|
0.5
|
0.3333
|
SNP 81
|
F:ACGTTGGATGCTGCTATAGCCTGTAACCTC
R:ACGTTGGATGCTCTTCAGTGTACAGTTGAC
EXT:CCTTGGAAAGACATAAAAATAAT
|
A/G
|
139
|
65
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 82
|
F:ACGTTGGATGTCTCCTGCTTGATGGCAGAC
R:ACGTTGGATGAGCAGCTGAGTCAGGAGAAC
EXT:TGGTTGTGGAGCTGATCCAG
|
G/T
|
140
|
73
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 83
|
F:ACGTTGGATGATGGCGTTTAGGCATCTCTC
R:ACGTTGGATGGTCGAGGAAGAAGAAGCGAG
EXT:agCTCTCGAGGCGGCTGGAAC
|
C/G
|
140
|
75
|
0.375
|
0
|
0.3333
|
1
|
SNP 84
|
F:ACGTTGGATGGAGTTGAACAAGTTCACGGC
R:ACGTTGGATGATCAGTTCGCTGGAGGTCT
EXT:ccgtTCAGACGGGGAAGGGGA
|
A/G
|
140
|
55
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 85
|
F:ACGTTGGATGGAGAGATGTGCTGAATGGAG
R:ACGTTGGATGGTATGTACTGTGCACACAGC
EXT:TGAATGGAGATGGTGTTG
|
T/G
|
140
|
52
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 86
|
F:ACGTTGGATGAACCCCTTTATGTTCCACCG
R:ACGTTGGATGCTGACACAATTCCTTCTGGC
EXT:cATGTTCCACCGCCAGATG
|
T/G
|
140
|
83
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 87
|
F:ACGTTGGATGAAGATGGCCAACCTTTCTCC
R:ACGTTGGATGAAGAAGGCTGGAGAAGACTG
EXT:TCCACAGAGAGGCGAGA
|
T/G
|
140
|
74
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 88
|
F:ACGTTGGATGTGCGTACCTGGACTCACATT
R:ACGTTGGATGACAACTTGACACAAGCCACG
EXT:ACTCAAGTCCAGAGGTT
|
G/A
|
139
|
79
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 89
|
F:ACGTTGGATGTGAGATGCATAGAGGACGAG
R:ACGTTGGATGTCCTAATCACACGCCTCATC
EXT:gggtAGAAAAAGGCAACGAGATTG
|
C/A
|
140
|
63
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 90
|
F:ACGTTGGATGTCAAGGCCGTGATCAAGATG
R:ACGTTGGATGAGTTATTGCACAGCAACGGG
EXT:caatATGCATCGCCATCGACC
|
T/G
|
140
|
73
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 91
|
F:ACGTTGGATGTTACCTCGGAGCAAGGTTTC
R:ACGTTGGATGCACCGTTCTCTCTATTCTCC
EXT:ggaAAGGTTTCCTGACTCCCA
|
C/A
|
140
|
87
|
0.358887
|
0.25
|
0.4688
|
0.4286
|
SNP 92
|
F:ACGTTGGATGTGCAGAAGACACACTCGAAG
R:ACGTTGGATGTGATTTCCCTCTGAAGAGCC
EXT:tCTGGGGAGAAGGAAAAG
|
G/C
|
140
|
86
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 93
|
F:ACGTTGGATGACAGAGAACTCACTCCTCCC
R:ACGTTGGATGATGTGTGTGTTCTCACCAGC
EXT:cGAAGAGCTGATCCAGGC
|
T/C
|
139
|
89
|
0.239198
|
0.3333
|
0.2778
|
1
|
SNP 94
|
F:ACGTTGGATGGCTCCTCTGACTTTTTAGTG
R:ACGTTGGATGGGAAGACAATAGGATGAGAC
EXT:gTCCACATTCTACATTTATGTT
|
A/T
|
139
|
62
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 95
|
F:ACGTTGGATGATAGAAGGAGGCCATCAAAG
R:ACGTTGGATGGGACTACTGAAGACTGACAC
EXT:ccccAGGCCATCAAAGGAAATG
|
T/G
|
139
|
70
|
0.358887
|
0.75
|
0.4688
|
1
|
SNP 96
|
F:ACGTTGGATGAACCCTGTAAGGTGTCCTTG
R:ACGTTGGATGGGAACTATCCTCCTCCTTG
EXT:gggaGTGTCCTTGGGTGTTATGAAAG
|
G/A
|
139
|
74
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 97
|
F:ACGTTGGATGGGGTAGTGCTTTTTTAGCTC
R:ACGTTGGATGCTGGAAAAGTACGTGGAAAG
EXT:GCTTTTTTAGCTCATATATCCC
|
C/T
|
139
|
86
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 98
|
F:ACGTTGGATGGTCGACAGCCTGTGTTTTTG
R:ACGTTGGATGAGTCTCATGATTAGGCTCCG
EXT:actgTTGAGGCATGGTTGTCAACTT
|
G/A
|
139
|
54
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 99
|
F:ACGTTGGATGACCTGTCCTTGAGCTCTTCG
R:ACGTTGGATGAAGGAAGGGATGAATGAGGG
EXT:gagtGGTTCAACCGGTGTCTCGGG
|
G/A
|
139
|
79
|
0.345667
|
0.6667
|
0.4444
|
1
|
SNP 100
|
F:ACGTTGGATGATCCCATGTACTCCTTGCTG
R:ACGTTGGATGGACCTCATGTGGCTTATATG
EXT:TACTCCTTGCTGTAATAAAAC
|
C/A
|
139
|
69
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 101
|
F:ACGTTGGATGCATTCGTCGCTGAAACAGAG
R:ACGTTGGATGATCACTACCACAACCCCAAG
EXT:GAAACAGAGCACAAATGT
|
T/G
|
139
|
88
|
0.23923
|
0.3333
|
0.2778
|
1
|
SNP 102
|
F:ACGTTGGATGTGAAGTTCTTCTGACCCGAG
R:ACGTTGGATGTCTGTTCTTGTACATATCCC
EXT:accctAGCTCCTCCAACAATGCAACAT
|
G/T
|
140
|
52
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 103
|
F:ACGTTGGATGTTCCATTGAAGGTGACTGGG
R:ACGTTGGATGTCAACGTCACACAAGCCAAG
EXT:TGTTTCCTAAAATCCACCA
|
A/G
|
139
|
76
|
0.194824
|
0.25
|
0.2188
|
1
|
SNP 104
|
F:ACGTTGGATGCATCGGGATACTCTCAGAGG
R:ACGTTGGATGTCAGGCAGAGCAAAGAAAAG
EXT:gagtGATACTCTCAGAGGTGATTC
|
T/C
|
139
|
84
|
0.304688
|
0.5
|
0.375
|
1
|
SNP 105
|
F:ACGTTGGATGGCTTCAGCGTGAAAGCATGG
R:ACGTTGGATGTCTACTTGGTCAGGGTTTGG
EXT:GCCTGCCAAGAGACATA
|
C/T
|
139
|
79
|
0.194824
|
0.25
|
0.2188
|
1
|