Anders S, Pyl PT, Huber W. HTSeq--a Python framework to work with high-throughput sequencing data. BIOINFORMATICS 31:166-169
Bijay-Singh, Yadvinder-Singh, Sekhon GS. Fertilizer-N use efficiency and nitrate pollution of groundwater in developing countries. j contaminant hydrology 20:167-184
Bijay-Singh, Yadvinder-Singh, Sekhon GS. Fertilizer-N use efficiency and nitrate pollution of groundwater in developing countries. ENVIRON POLLUT 3:366
Byrne SL, Nagy I, Pfeifer M, Armstead I, Asp T. A synteny-based draft genome sequence of the forage grass Lolium perenne. PLANT J 84:816-826
Cabello-Hurtado F, Zimmerlin A, Rahier A, Taton M, DeRose R, Nedelkina S, Batard Y, Durst F, Pallett KE, Werck-Reichhart. Cloning and Functional Expression in Yeast of a cDNA Coding for an Obtusifoliol 14α-Demethylase (CYP51) in Wheat. BIOCHEM BIOPH RES CO 2:381-385
Chen Q, Liu Z, Wang B, Wang X, Lai J, Tian F Transcriptome sequencing reveals the roles of transcription factors in modulating genotype by nitrogen interaction in maize. PLANT CELL REP 34:1761-1771
Gang M, Lancui Z, Asami M, Kazuki M, Kazuki Y, Masaki Y, Anung W, Reiko M, Kato M. Enzymatic Formation of β-Citraurin from β-Cryptoxanthin and Zeaxanthin by Carotenoid Cleavage Dioxygenase4 in the Flavedo of Citrus Fruit. PLANT PHYSIOL 2:682-695
Ge L, Dou Y, Li M, Qu P, He Z, Liu Y, Ma Y. SiMYB3 in Foxtail Millet (Setaria italica) Confers Tolerance to Low-Nitrogen Stress by Regulating Root Growth in Transgenic Plants. International Journal of Molecular Sciences 22:5741
Gelli M, Konda AR, Liu K, Zhang C, Dweikat IM. Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum. BMC PLANT BIOL 17:123
Hu R, Yu C, Wang X, Jia C, Pei S, He K, He G, Kong Y, Zhou G. De novo Transcriptome Analysis of Miscanthus lutarioriparius Identifies Candidate Genes in Rhizome Development. FRONT PLANT SCI 8:492
Huang A, Sang Y, Sun W, Fu Y, Yang Z. Transcriptomic Analysis of Responses to Imbalanced Carbon: Nitrogen Availabilities in Rice Seedlings. PLOS ONE 11:e165732
Huang Y, Guo Y, Liu Y, Zhang F, Wang Z, Wang H, Wang F, Li D, Mao D, Luan S, Liang M, Chen L. 9-cis-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice. FRONT PLANT SCI 9:162
Jian RW, Hawkins CD, Letchford T. Relative growth rate and biomass allocation of paper birch (Betula papyrifera) populations under different soil moisture and nutrient regimes. CAN J FOREST RES 28:44-55
Kotur Z, GLASS ADM. A 150 kDa plasma membrane complex of AtNRT2.5 and AtNAR2.1 is the major contributor to constitutive high-affinity nitrate influx in Arabidopsis thaliana. Plant Cell & Environment 38:1490-1502
Leiva EN, Reeder BJ, Wilson MT, Bulow L. Sugar beet hemoglobins: reactions with nitric oxide and nitrite reveal differential roles for nitrogen metabolism. BIOCHEM J 476:2111-2125
Liu Y, Shi Z, Maximova SN, Payne MJ, Guiltinan MJ. Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao. BMC PLANT BIOL 15:160
Livak K, Schmittgen T. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-△△Ct Method. METHODS 25:402-408
Loaiza P, Balocchi O, de la Barra C, López I F. Perennial ryegrass productivity and nutritive quality as affected by frequency of nitrogen fertilizer addition. GRASSL SCI 2:86-92
Lu M, Chen M, Song J, Wang Y, Pan Y, Wang C, Pang J, Fan J, Zhang Y. Anatomy and transcriptome analysis in leaves revealed how nitrogen (N) availability influence drought acclimation of Populus. Trees
Magwanga RO, Kirungu JN, Lu P, Cai X, Zhou Z, Xu Y, Liu F. Map-Based Functional Analysis of the GhNLP Genes Reveals Their Roles in Enhancing Tolerance to N-Deficiency in Cotton. INT J MOL SCI 19:4953
McClearn B, Gilliland TJ, Delaby L, Guy C, Dineen M, Coughlan F, McCarthy B. Milk production per cow and per hectare of spring-calving dairy cows grazing swards differing in Lolium perenne L. ploidy and Trifolium repens L. composition. J DAIRY SCI 102:8571-8585
Mei J, Li F, Liu X, Hu G, Fu Y, Liu W. Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice. PLANT SCI 256:39-45
Mu RL, Cao YR, Liu YF, Lei G, Zou HF, Liao Y, Wang HW, Zhang WK, Ma B, Du JZ, Yuan M, Zhang JS, Chen SY. An R2R3-type transcription factor gene AtMYB59 regulates root growth and cell cycle progression in Arabidopsis. CELL RES 19:1291-1304
Nakabayashi R, Yonekura-Sakakibara K, Urano K, Suzuki M, Yamada Y, Nishizawa T, Matsuda F, Kojima M, Sakakibara H, Shinozaki K, Michael AJ, Tohge T, Yamazaki M, Saito K. Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. PLANT J 77:367-379
Nawaz MA, Chen C, Shireen F, Zheng Z, Sohail H, Afzal M, Ali MA, Bie Z, Huang Y. Genome-wide expression profiling of leaves and roots of watermelon in response to low nitrogen. BMC GENOMICS 19:456
Osaki M, Iyoda M, Tadano T. Ontogenetic changes in the contents of ribulose-1,5-bisphosphate carboxylase/oxygenase, phosphoenolpyruvate carboxylase, and chlorophyll in individual leaves of maize. Soil Science & Plant Nutrition 41:285-293
Pal S, Yadav AK, Singh AK, Rastogi S, Gupta MM, Verma RK, Nagegowda DA, Pal A, Shasany AK. Nitrogen treatment enhances sterols and withaferin A through transcriptional activation of jasmonate pathway, WRKY transcription factors, and biosynthesis genes in Withania somnifera (L.) Dunal. PROTOPLASMA 254:389-399
Paulino PR, Mauricio RPD, Guedes CLG, Rensing SA, Birgit K, Bernd MR. PlnTFDB: updated content and new features of the plant transcription factor database. NUCLEIC ACIDS RES 1 38(suppl_1): D822–D827
Peng M, Bi YM, Zhu T, Rothstein S. Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. PLANT MOL BIOL 65:775-797
Ristova D, Carre C, Pervent M, Medici A, Kim GJ, Scalia D, Krouk G. Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root. SCI SIGNAL 451:s13
Ruuska SA, Lewis DC, Kennedy G, Furbank RT, Jenkins CL, Tabe LM. Large scale transcriptome analysis of the effects of nitrogen nutrition on accumulation of stem carbohydrate reserves in reproductive stage wheat. PLANT MOL BIOL 66:15-32
Schiessl K, Lilley JLS, Lee T, Tamvakis I, Kohlen W, Bailey PC, Oldroyd GED. NODULE INCEPTION Recruits the Lateral Root Developmental Program for Symbiotic Nodule Organogenesis in Medicago truncatula. CURR BIOL
Tartachnyk II, Rademacher I, Kühbauch W. Distinguishing nitrogen deficiency and fungal infection of winter wheat by laser-induced fluorescence. PRECIS AGRIC 7:281-293
Tiwari JK, Buckseth T, Zinta R, Saraswati A, Singh RK, Rawat S, Dua VK, Chakrabarti SK. Transcriptome analysis of potato shoots, roots and stolons under nitrogen stress. Sci Rep 10:1152
Wang L, Jiang J, Song A, Wang H, Li P, Guan Z, Chen F, Chen S. Comparative transcriptome analysis of Chrysanthemum nankingense in response to nitrogen deficiency. SCI HORTIC-AMSTERDAM 195:101-107
Wang YY, Cheng YH, Chen KE, Tsay YF. Nitrate Transport, Signaling, and Use Efficiency. ANNU REV PLANT BIOL 69:85-122
Wang YY, Hsu P, Tsay Y Uptake, allocation and signaling of nitrate. TRENDS PLANT SCI 17:458-467
Wellburn, R. A. The Spectral Determination of Chlorophylls a and b, as well as Total Carotenoids, Using Various Solvents with Spectrophotometers of Different Resolution. J PLANT PHYSIOL 144:307-313
Wright, J. M. Nitrate Accumulation In Crops And Nitrate Poisoning In Animals. Advances in Agronomy 197-247
Xiujing H, Haixia M, Xiongwei Z, Shujun N, Yuhua L, Zhiming Z, Yaou S, Qi C, Yanli L, Hai L, Shufeng Z, Shibin G, Guangtang P, Haijian L. Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress. PLOS ONE 11:e151697
Yang Y, Feng W, Qing W, Jianyun R. Transcriptome analysis using RNA-Seq revealed the effects of nitrogen form on major secondary metabolite biosynthesis in tea (Camellia sinensis) plants. ACTA PHYSIOL PLANT 7:127
Yang Y, Gao S, Su Y, Lin Z, Guo J, Li M, Wang Z, Que Y, Xu L. Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress. ENVIRON EXP BOT
Ye G, Ma Y, Feng Z, Zhang X. Transcriptomic analysis of drought stress responses of sea buckthorn (Hippophae rhamnoidessubsp. sinensis) by RNA-Seq. PLOS ONE 8:e202213
Young MD, Wakefield MJ, Smyth GK, Oshlack A. Gene ontology analysis for RNA-seq: accounting for selection bias. GENOME BIOL 11:R14