4.1 Clinical specimens
We collected tumor specimens and matched non-malignant neighboring tissues from 116 HCC patients at Gansu Provincial Hospital from March 2014 to March 2019. Histology was assessed by two independent pathologists. None of 116 HCC patients received tumor-specific therapy prior to surgery. HCC tissues and neighboring non-malignant tissues were obtained, fixed with 10% formaldehyde solution, and embedded in paraffin wax. Use of patient specimens was approved by the Ethics Committee of Gansu Provincial Hospital (Approval No. 2019–063). Patients characteristics are listed in Table 1.
4.2 In Silico analysis using the Cancer Genome Atlas (TCGA) dataset
To compare the KIF21B expression profile with the clinicopathologic features in HCC, 50 HCC patients with cancer and matched neighboring non-malignant tissues of TCGA data was retrieved from http://cancergenome.nih.gov/. Data extraction was performed using R 3.1.2.
4.3 Cell culture and transfection
Huh-7 and BEL-7404 human HCC cell lines were provided by Shanghai cell collection (Shanghai, China). They were grown in RPMI-1640 medium enriched with 10% FBS, 0.1 mg/mL streptomycin, as well as 100U/mL penicillin (All form Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) under 37°C and 5% CO2 conditions. Afterwards, they were inserted for 24 h with two lentiviral constructs, short hairpin RNA (shRNA) targeting the KIF21B gene (shKIF21B) and control shRNA (shCtrl) generated by Shanghai Gene Chemical Co., Ltd (Shanghai, China) via transfection. The cDNA encoding the p65 gene was subcloned into the pCDNA3 vector to generate the recombinant vector pCDNA3-p65. Green fluorescence was employed to determine the efficiency of transfection. Stable cell lines were screened for 10 days at 0.5 µg/mL puromycin. The target sequences of KIF21B were as follows: shKIF21B#1: 5'-GGAGCTGATGGAGTATAAG-3'; shKIF21B#2: 5'-GGGCTATAGTGATCTGTTCCG-3'; the shCtrl sequence was as follows: 5'-TTCTCCGAACGTGTCACGT-3'.
4.4 RT-qPCR analysis
RNA extraction kits (Shanghai Pufei Biotech Co., Ltd,) were employed to isolate total cellular RNA. Reverse transcription was carried out using HiFiScript cDNA Synthesis Kits (CWBIO, Beijing, China). The expression of KIF21B mRNA was assayed using a SYBR Premix Ex Taq II kit (Takara, Kyoto, Japan). The 2-∆∆Ct approach was employed to analyze the data. GAPDH was employed as an internal standard for the quantification. The primers for KIF21B were 5′- GGATGCCACAGATGAGTT − 3′ (forward) and 5′- TGTCCCGTAACCAAGTTC − 3′ (reverse); and primers for GAPDH were 5′- TGACTTCAACAGCGACACCCA − 3′ (forward) and 5′- CACCCTGTTGCTGTAGCCAAA − 3′ (reverse). Primer sequences are shown in Table 3. The primers used in this study were synthesized by Shanghai GeneChem Co., Ltd.
4.5 Western blot analysis
After 72 h of cell infection, the RIPA buffer (Beyotime, China) was employed to isolate the total cellular proteins. Then, as described by the manufacturer, the BCA kit (Beyotime, China) was employed to determine protein concentration. Next, protein samples were fractionated on 10% SDS-PAGE gels, followed by blotting onto a PVDF membranes. After that, 5% fat-free milk was employed to block the proteins, and then inoculated with 1:250 dilution of the corresponding primary antibody and incubated overnight at 4°C. After washing, they were inoculated for 1 h with HRP-labelled secondary antibody (Santa Cruz Biotechnology, Santa Cruz, CA) (1:1000 dilution). The expression of target protein was analyzed by chemiluminescence chromogenic assay and ImageJ software (NIH, Bethesda, MD, USA).
4.6 Cell growth assay
Three days after lentivirus infection with shRNA, cells (2,000 cells per well) were inoculated into a 96-well plate, and incubated for five days. From the second day, a Celigo Imaging Cytometer (Biotek, USA) continuously detected the plate for 5 days, and accurately scanned the number of green fluorescent cells as an indicator of cell proliferation rate.
4.7 MTT assay
The MTT assay was employed to explore cell viability. Cells were inoculated into 96-well plates in triplicate. Then, MTT (5 mg/mL) was introduced to each well (20 µL) and incubated at 37°C for 4 h. Next, 100 µL of dimethyl sulfoxide (DMSO, Shanghai, China) was introduced to each well. Cell-growth ratios were detected by a MTT colorimetric assay after incubation for one, two, three, four, and five days. Finally, an enzyme-linked immunosorbent assay plate reader was employed to read the absorbance at 490 nm.
4.8 Apoptosis analysis
Cells were collected and re-suspended in PBS for 48 h after transfection at 3000 cells/mL. According to the instructions of AnnexinV-APC/PI Apoptosis Detection kit (eBioscience, Shanghai, China), cells were suspended in 300 µL of binding buffer and stained at room temperature (RT) for 20-30min in the dark to flow cytometry (eBioscience, Shanghai, China).
4.9 Colony formation assay
We performed colony formation assays to assess silencing KIF21B on HCC cell growth. Cells transfected with shRNA-KIF21B or shCtrl lentivirus (200 cells/well) were planted into six-well plates, and grown at 37°C for one to two weeks. After that, they were fixed with 4% paraformaldehyde for 30 min, followed by staining with 0.1% crystal violet. Finally, a dissecting microscope was employed to count colony numbers, and the cells were imaged.
4.10 Wound-healing assay
After 24 hours infection, cells (5 × 105 cells/well) were cultured in 6-well plates until confluent, and a wound was generated using a pipette tip. Wound closure was measured at 0 and 24 h after scratching.
4.11 Transwell assay
Cell invasion was assessed using Transwell chambers (Millipore) coated with Matrigel. We added 1 × 105 lentivirus-infected cells in the upper chamber; the lower chamber was supplemented with medium containing FBS. After incubation for 24 h, we wiped the cells that did not pass through the membrane with a cotton swab. We fixed migrated cells in methanol for 10 min and absorbed them with 0.25% crystal violet. Cultured cells were counted in five random microscope felds.
4.12 Immunohistochemistry (IHC)
Slices of each sample (5 µm thick) were mounted on glass slides, dewaxed, dehydrated, and boiled in 10 mmol/L citrate buffer to recover antigens. After incubation with methanol enriched with 0.3% H2O2 for 10 min to repress the activity of endogenous peroxidase, the we sealed the sections with 2% BSA for 30 min. Afterwards, the sections were inoculated with polyclonal rabbit-human KIF21B antibody and incubated overnight at 4°C (1:200; Bioss, Beijing, China). Thereafter, they were rinsed thrice with PBS, the slides were inoculated with goat anti-mouse IgG conjugated to horseradish peroxidase for 30 min, reacted with diaminobenzidine, and re-stained with hematoxylin. KIF21B expression was assessed by two independent pathologists. The staining results were evaluated by considering both the proportion of positive cells along with the intensity of staining. The proportion of positive stained cells were estimated as follows: 0 (< 10%), 1 (10–25%), 2 (25–50%), 3 (50–70%), and 4 (> 70%). The intensity of staining was 3 (strong staining), 2 (moderate staining), 1 (weak staining) and 0 (no staining). According to the immunoreactive score = staining intensity × percentage of positive cells, and score was between 0 and 12. A total score of more than 5 was considered to indicate elevated expression
4.13 Immunofluorescence.
Treated gastric cancer cells were fixed with methanol. After several rinses with PBS, the cells were permeabilized with 0.2% Triton X-100 for 5 min. The permeabilized cells were subsequently blocked with 0.1% BSA and incubated overnight with primary antibody at 4°C and then incubated with secondary antibodies (Invitrogen) for 1 h. Finally, the cells were incubated with DAPI (Sigma-Aldrich) for 5 min and viewed with a Fluoview IX71 microscope (Olympus, Tokyo, Japan).
4.14 In vivo tumorigenic assay
Twenty four- to six-week-old female BALB/c-nude mice (Vital River Inc., Beijing, China) were grouped randomly into two groups (n = 10/per group); NC group and KD group. Huh-7 cells transfected with shCtrl or shKIF21B were suspended in PBS. An equipartition sample of 3×106 cells/100 µL PBS was administered subcutaneously into the right flanks of the mice. The size of the tumor was recorded every seven days with a caliper, and the volume (V) was determined using the formula: V = (L×W2)/2, where L is the largest diameter (mm), and W is the smallest diameter (mm). After 35 days, the mice were scarificed, and the weight of the tumor was recorded. An animal protocol was approved by the Animal Care and Use Committee of the Gansu Provincial Hospital (Approval No. 2019–063).
4.15 Statistical analyses
Statistical analyses were carried out using GraphPad Prism V.6 (GraphPad Software) and SPSS (V.22, IBM). Comparisons of quantitative and categorical variables between the two groups were performed using two-sided Student's t-tests and Chi-squared tests, respectively. The Kaplan-Meier approach with the log-rank test was implemented to plot the survival curves. The Cox proportional hazards model was employed to determine the prognostic factors. Data are given as mean ± standard deviation (SD). All samples were tested in triplicate. P < 0.05 signified statistical significance. NS, not significant (P > 0.05), * signified P < 0.05, ** signified P < 0.01, *** signified P < 0.001.