Animals
Adult female Sprague-Dawley rats between 8 and 16 weeks of age (weighing approximately 180–250 g) were used for all gel implantation experiments. All rats were bred ad libitum in a room at 24–25°C, 40–70% humidity, and 12 h of light and dark. All the experiments were approved by the Institutional Animal Care Committee. The experimental procedures and protocols were approved by the Animal Ethics Committee of Keio University Tokyo, Japan, (approval number: A2022-229) and were performed according to the Guide for the Care and Use of Laboratory Animals (National Institutes of Health, Bethesda, MD, USA). The animal experiments were performed according to the ARRIVE (Animal Research: Reporting of In Vivo Experiments) guidelines 2.0 as a guideline for animal experiments, and all necessary checklist criteria were met.
Human hepatocytes
HepG2 and PXB cells were obtained from Cellular Engineering Technologies, Inc., and Phoenix Bio, Japan, respectively. PXB cells are pure human hepatocytes freshly isolated from PXB mice that have been used in some in vitro and in vivo studies. [48] [49] For HepG2 culture, HepG2 Hepatocellular Carcinoma Expansion Media were used. PXB cells were cultured in 6-well culture plates according to the manufacturer’s instructions.
Decellularization of porcine liver
The L-ECM was prepared according to a previous report, with some modifications [24] [50]. Briefly, livers were removed from the disinfected peritoneal cavity of pigs, frozen at − 80°C, and thawed at 4°C for over 24 h for the freeze-thaw process, a common initial decellularization step. The porcine liver was cut into small pieces using the food dicer DC-203 (Emura Food Machine CO, LTD, Japan) for uniform tissue decellularization. The fragments were then rinsed three times a day for two days at 4°C with phosphate-buffered saline (PBS; Fujifilm Wako Pure Chemical Inc., Osaka, Japan) under constant stirring. Thereafter, the fragments were decellularized with 1% TritonX-100 (Sigma-Aldrich Co., Tokyo, Japan) and ammonium hydroxide under continuously stirring for 5 days. To remove the remaining detergent, the pieces of decellularized liver were rinsed with PBS; the solution was changed thrice per day for 2 days. The pieces were then mixed with PBS containing an antibiotic, an antimycotic (Thermo Fisher Scientific K.K., Tokyo, Japan), and 300 µg/mL sodium colistin methanesulfonate (Fujifilm Wako Chemicals, Osaka, Japan) for 1 h, followed by the addition of PBS containing 1× antibiotic-antimycotic (Nacalai Tesque Co., Ltd., Tokyo, Japan) and 200 µg/mL gentamicin sulfate (Nacalai Tesque Co., Ltd., Tokyo, Japan) for 1 h. Decellularized liver ECM (dECM) powder was produced after 3 days of lyophilization and subsequent milling.
Hepatocyte cultivation in hydrogel
Cultured PXB and HepG2 cells were individually dissociated using Accutase (Thermo Fisher Scientific, USA) and mixed with the gel solution. In total, 8.0×105 human hepatocyte cells (PXB or HepG2) were encapsulated within the solution of 40 µL and 200 µL of either the L-ECM gel or the collagen gel. For PXB cells, a dimpled parafilm substrate was prepared for generating L-ECM gel droplets by layering a square of parafilm over an empty tip tray for 200-µL tips. [51] After immediate gelation in an incubator for 10 min, 3D culture was performed on the medium. After 3–6 days, the ELISA and qRT-PCR results of the supernatant and histological findings of the cells and hydrogel were analyzed. The PXB cells were encapsulated in hydrogel and grown for 3 days in Corning's ultra-low attachment 6-well plates.
Protein analysis
To analyze the samples, each sample was first digested and peptised in a solution containing 0.001% trypsin, 10 µM Tris-HCl, 0.005% n-octyl glucopyranoside, and 0.7 M guanidine hydrochloride (pH 8.8) for 12 hours. Subsequently, the resulting peptides were reduced with 5 mM tris(2-carboxyethyl) phosphine for 30 minutes at 65°C and alkylated with 10 mM iodoacetamide for 30 minutes at 25°C. The resulting digested peptides were then subjected to analysis using an Evosep One LC system (EVOSEP) connected to a Q-Exactive HF-X mass spectrometer (Thermo). The mobile phases consisted of 0.1% formic acid as solution A and 0.1% formic acid/99.9% Acetonitrile as solution B. The analysis was performed in data-dependent acquisition mode, and the top 25 recorded mass spectrometry spectra between 380 and 1500 m/z were selected for further analysis. All MS/MS spectra were then searched against the protein sequences of the Sus scrofa (NCBI: txid9823) protein database using Proteome Discoverer 2.2 with the SEQUEST search engine. The peptide spectrum match was subjected to a false discovery rate (FDR) set at 1% for reliability. To generate a heat map of the matrisomes identified via LC-MS, GraphBio was used.
Electron microscopy
The resulting organ-derived hydrogel solution was placed onto a glass slide, and the solution was transferred to the gel under the same conditions as described above. The L-dECM gel was fixed on a glass slide in a freshly prepared 2.5% glutaraldehyde solution for scanning electron microscopy. Samples were fixed with 1.0% osmium tetroxide (TAAB Laboratories) for 2 h at 4°C, rinsed in 0.1 M phosphate buffer (pH 7.4, Muto Pure Chemicals), and then treated with a series of escalating ethanol concentrations.
The samples were coated with osmium to a thickness of approximately 2 nm using a conductive osmium coater after being dried using a critical point drier (CPD300, Leica Biosystems; Neoc-ST, Meiwafosis). Using an SU6600 (Hitachi High Tech) apparatus, scanning electron microscopy images were captured at 5 keV.
Rheological characterization
The collagen concentration in the matrix gel solution was measured for each L-dECM concentration (8, 12, 16, and 20 mg/kg).
Using a longitudinal vibration viscoelastic meter (PZ-Rheo NDS-1000, Taisei Co., Ltd., Japan), the rheological characteristics of the L-dECM and rat tail collagen I hydrogels (Corning) were assessed. The samples were tested at 25°C with a fixed frequency of 3 Hz and an amplitude of 250 m to determine the dynamic viscosity. Compression tests were used to determine the storage modulus. Samples were measured using a 10-mm diameter parallel plate at 25°C with a fixed frequency of 3 Hz and an amplitude of 10 µm.
The rheological characteristics of the solubilized LCM gel were investigated using the same setting. In the linear regime, the hydrogel's total resistance to deformation was assessed by the complex viscoelastic modulus (E* = E′ + iE′′), where E′ represented the storage modulus and E′′ represented the loss modulus. Moreover, Tan Delta (= E′′/E′) represented the hydrogel's frictional dissipations.
PXB transplantation
SD rats were used for the in vivo experiments. Figure 4A depicts the surgical procedures. After the incision, a splenectomy was performed. The left lateral lobe was mobilized to the median. Suturing of the lateral left, right, and internal left lobes with 3 − 0 vicryl was performed, and a pocket was made. Peeling of the bottom of the pocket on the lateral left lobe with Biopsy trepan large diameter type 12 mm (Kai Corporation, Japan). Subsequently, 8.0 × 105 cells of PXB embedded in the 40 µL of L-ECM gel was transplanted onto the pocket. In the rat model of liver fibrosis, 2 sets of 8.0 × 105 cells of PXB embedded in the 40 µL of L-ECM gel were translanted. PXB cells were cultured in L-ECM gel for 3 days before transplantation. Finally, suturing with lobes was performed, and the gel was packed into the liver lobes.
Postoperative management
Immunosuppressive agents were administered daily after transplantation. According to the protocol [52], PSL 20 mg/kg was administered intramuscularly and tacrolimus 1µg/kg was administered intrasubcutaneously. Ceftriaxone (20 mg/kg), an antibiotic, was administered daily for one week. The rats were sampled one week after transplantation. The postoperative schedule is shown in Fig. 4B.
Biochemical blood examination
Via the rat's subclavian vein, 500 µL of blood was taken. Biochemical analysis was performed with 100 µL by Piccolo Xpress (CENTRAL SCIENTIFIC COMMERCE, INC, JAPAN). The remaining blood was used for ELISA.
Gene expression analysis
Using an RNeasy Plus Mini Kit, total RNA was extracted from HepG2 and PXB cells (Qiagen, USA). A QuantiTect Rev was used to create cDNAs from 500 ng of total RNA for RT-PCR. Transcription Kit (Qiagen, USA) was used as directed by the manufacturer. SYBR Master Mix was used for the PCR (Thermo Fisher Scientific, USA). The Supplementary Table 1 contains the primer sequences. Rhelixa, Inc. carried out RNA sequencing (RNA-seq) for the whole-transcriptome study (Tokyo, Japan). Briefly, library construction was performed using NEBNext® Ultra™ II Directional RNA Library Prep Kit (Illumina), according to the manufacturer’s instructions. Using the Illumina NovaSeq 6000 platform, sequencing was carried out. The expression profiles were derived as read counts and fragments per kilobase of transcripts per million mapped reads for each sample, transcript, and gene. The Benjamini–Hochberg approach was also used to identify differentially expressed genes (DEGs) using criteria of |log2 (Fold Change, FC)| > 1 and p-value 0.05. Using ggVolcanoR, a volcano graphic was produced using the FC and p-value of the DEGs. Using GraphBio, heatmaps were produced using the Z-scores of the normalized numbers. GOATOOLS (version 1.1.6) was used for GO analysis of DEGs, whereas ClusterProfiler was used for GSEA (Version 3.12.0).
Protein ELISA
The amounts of human ALB in the culture media and rat blood samples were assessed using a Human ALB ELISA Kit (Bethyl Laboratories, Inc.). On day 3, an ELISA kit was used to assess the level of human ALB in the culture media. On days three, five, and seven after transplantation, rat blood was collected.
Histological analysis
With 4% paraformaldehyde for 48 hours, harvested livers were fixed. The sections were cut to a thickness of 0.3 µm after being immersed in paraffin blocks. The sections were embedded in paraffin blocks and subsequently sliced into 0.3 µm thickness. Sections were stained with either azan or H&E (Sigma-Aldrich Co.) according to established procedures. Using a BZ-X800 microscope, the slides were captured as images (KEYENCE Co., Osaka, Japan).
Immunohistochemical analysis
The slices with paraffin embedding were deparaffinized and rehydrated. Citrate buffer (Dako, Agilent Technologies Japan, Ltd.) was used to extract the antigens from each segment for 15 minutes at 120°C. The sections were treated with a primary antibody solution at 4°C overnight after blocking with 1% BSA (Sigma-Aldrich Co.). The primary antibodies and dilutions are as follows: anti-CK8/18 (P05786, Progen Bio), anti-human-albumin (ab10241, abcam), anti-claudin-1 (13255, Cell Signaling Technology), anti-E-cadherin (ab76055, abcam), anti-Collagen IV (ab6586, abcam), anti-HNF 4α (3113S, CST), ani-Pcam1 (ab182931, abcam), anti-human mitochondria (Merck, MAB1273), anti-DPP IV (CST, 40134S), anti-ZO-1 (Invitrogen, 33-9100), and anti-integrin (abcam ab52971) antibodies and laminin (ab11575, Abcam).
After rinsing, the pieces were mounted with DAPI and ProLong Diamond Antifade Mountant (Invitrogen Inc., Carlsbad, CA, USA). Slides were imaged using a BZ-X810 microscope (KEYENCE Co., Osaka, Japan). Claudin-1 positive or Pcam1-positive areas were counted using ImageJ. Three samples were randomly chosen and claudin-1 or Pcam1 positive area were counted under the same conditions (range, threshold).
Statistical analysis
Paired continuous data were evaluated using Student's t-test. Statistical significance was defined as a p-value < 0.05. SPSS software (SPSS 28.0, Chicago, IL, USA) was used for the statistical analysis.