Materials
FRAMELIM® contains tyndallized Bifidobacterium longum and Lactobacillus acidophilus lysates, in addition vitamins A, B1, B3, B6, B9, B12 and omega 3 fatty acids in cod liver oil was included. SIGMAFAST™ protease inhibitor cocktail tablets and PhosSTOP™ phosphatase inhibitor tablets, Human Aβ40, purity ≥ 90% and Thioflavin T was purchased from Sigma Aldrich. Ltd. (Germany). 2-cyano-3,12-dioxo-oleana-1,9(11)-dien-28-oic acid (CDDO), purity ≥ 95% was from Cayman Chemicals (US). APP rabbit (Abcam - ab101492), human reactive APP mouse ( Biolegend − 6E10 clone), LONP1 mouse ( Proteintech − 66043-1-Ig), SDHA rabbit (SantaCruz - sc-98253), GAPDH mouse (Sigma-Aldrich) antibodies was bought from commercial vendors. mAPP, mNFkB, mSOD-1 primer pairs was ordered from Sigma Aldrich (Germany).
Experimental animals, training procedure and Postbiotic supplementation
Thirty two male APP/PS1 transgenic mice (B6C3-Tg (APPswe,PSEN1dE9)85Dbo/Mmjax; APP/PS1TG) were randomly assigned to control (APP/PS1TG-C), exercise (APP/PS1TG-Ex), postbiotic treated (APP/PS1TG-Pt) and combined (exercise and postbiotic treated) (APP/PS1TG-Ex-Pt) groups. For The open field test, The Morris Water Maze Test, the spontaneous alteration tests, and the microbiome investigation, we added wild type mice of similar ages, from the same colony, as absolute controls (Wt). Treatments were carried out for 20 weeks starting at the age of 3 months, with the aim of decreasing the progress of AD development and functional impairment. Interval treadmill running was applied as the exercise regimen for the combined groups. Previously, animals were habituated on a motor driven treadmill (Columbus Inst. Columbus Ohio) at the assigned running speed for two weeks. Training was performed four times a week, for 60 min. Each training session lasted ten cycles, each cycle consisting of four minutes at high-intensity (20 m/min) and two minutes at low intensity (10 m/min). Transgenic control and postbiotic treated groups (APP/PS1TG-C and Pt) were placed on the treadmill and stayed there for five minutes/day on the stationary belt.
FRAMELIM® was administered five times a week (120 mg/day) for 20 weeks along with rodent chow (SDS /VRF1(P)). Considering that the mouse species has a high vitamin A and B storage capacity and needs a long time (up to 40 weeks) (19) to induce Vitamin A and B deficiency therefore FRAMELIM does not have significant impact on elevation of the vitamin– levels that can influence amyloidosis. We have daily monitored the food uptake of all mice and postbiotic treatment did not alter the amount of food and water intake of animals. After the 20 weeks of treatment, animals were exposed to two weeks of cognitive testing, but even during testing the postbiotic treatments were continued. After the cognitive tests were completed, animals were anesthetized with an intraperitoneal injection of ketamine (Richter, concentration: 100 mg/ml) /xylazine (Produlab Pharma, concentration: 20 mg/ml) cocktail in a dose of 0.1 ml / 10 g bodyweight and transcardially perfused with heparinized ice-cold saline. Brain was removed and measured, rapidly dissected in half along the corpus callosum. One hemibrain was postfixed in 4% paraformaldehyde (PFA) for immunohistological staining that was used for our earlier publication (10). The other hemibrain was dissected into three parts (frontal, parietal and occipital), and the hippocampus was removed. In this study we used whole hemibrain, excluding hippocampus. All parts were collected, frozen in liquid nitrogen and stored at − 80°C until further biochemical analysis.
Preparation of Aβ-40
Aβ-40 and Aβ-42 are the predominant species in the Aβ family, with the former being more abundant and the latter more toxic. Since Aβ-40 contains the same metal binding amino residues (His-6, -14 and − 13) as Aβ-42 and is cheaper, it was used to perform the following experiments. Human Aβ-40 (Sigma Aldrich. Ltd., Germany, ∼ 90%) stock solutions were prepared according to the manufacturer instructions. Lyophilized Aβ-40 was dissolved in Ca2+-free Phosphate Buffer Saline at 1 mg/ml (230 µM) and incubated 37 oC for 4 days.
Disaggregation assays
Disaggregation analysis of Aβ-40 was performed according to Chen et al. (20) with minor modifications. In disaggregation tests, Aβ-40 Zn2+/Cu2+ aggregates were prepared by treating fresh Aβ-40 solution with Zn2+ or Cu2+ and incubating at 37°C for 24 h with constant agitation. Afterwards, DMSO-solved Lactobacillus acidophilus and Bifidobacterium longum lysate, FRAMELIM® and DMSO – as a vehicle control -was added and incubated at 37°C for another 24 h with continuous agitation. The applied dose of Lactobacillus acidophylus and Bifidobacterium longum lysate was 10 µg/ml. In case of FRAMELIM® low (10 µg/ml) and high (100 µg/ml) dose was applied. The high dose of FRAMELIM® contained ∼ 10 µg/ml postbiotic equivalent. To characterize modulation of the aggregation UV/Vis spectrum (wavelength range of 190‒840 nm) was measured as well by DeNOVIX DS-11 FX Spectrophotometer/ Fluorometer before ThT fluorescence assay as well.
Fluorescence of thioflavin T (ThT)
After 2 days of disaggregation assay, DMSO-solved ThT at final concentration of 6 µM was applied to detect beta-amyloid aggregates. The fluorescence was measured after shaking 5 min in 100 ul volume of the incubated sample on ClarioStar plate reader (BMG Laboratories, Germany). Fluorescence spectrum was examined (λex = 415 nm) with an exit slit width of 1 nm between 442 and 600 nm (ClarioStar, Germany). The sample compartment was kept at 21°C.
Mitochondrial, cytosolic and nuclear fraction preparation
Fractionation was performed according to Frezza et al. (21) with minor modifications. Briefly, the frozen brain tissue of each animal was immersed in ice-cold IBc buffer (10 mM Tris-MOPS, 10 mM Tris-EGTA and 0.2 M Sucrose pH 7.4) in a ddH2O rinsed, precooled potter glassware, buffer volume was 10-fold. The tissue was homogenized by 3–4 times gentle stroke at 4 oC. The homogenate was centrifuged at 600 g, at 4 oC for 10 minutes. Supernatant was processed to further separation. The pellet included extracellular matrix elements, tissue debris and nuclear fraction was sonicated and sampled for Western blot. The supernatant was further centrifuged at 7000 g, at 4 oC for 10 minutes. The mitochondrial pellet was solved up in IBc buffer and used for gelatine zymography and/or sampled to further Western blot analysis. The initial and leftover supernatant was processed to Western blot sample considering as total and cytosolic fraction. Protein concentration was measured in each fraction using the Bradford assay (22).
Analysis of mitochondrial proteolytic activity analysis through gelatine zymography
Zymography assays were performed according to Kupai et al. (23) with minor alterations. Briefly, the zymography was performed using a 10% SDS-PAGE separation gel with 0.1% of gelatin. Forty micrograms of mitochondria fraction or total lysate from each group was incubated on charging buffer (100 mM Tris pH 6.8, 5% SDS, 20% glycerol, 0.1% bromophenol blue) for 10 min on ice, in a proportion of 1:1 (v/v). After the run, the gels were incubated in renaturation buffer (2.5% Triton X-100) for 30 min, with soft agitation. Then, the zymogram gels were changed to a development buffer (50 mM Tris, 5 mM NaCl, 10 mM CaCl2, 1 µM ZnCl2, 0.02% (v/v) Triton X-100, pH 7.4) for more 30 min, also with soft agitation. Finally, the gel immersed into a new development buffer, and incubated overnight at 37°C, in case of mitochondrial proteins the incubation time was 40 hours. For specific inhibition studies zymograms were incubated in the presence of 10 mM EDTA, 10 mM EGTA or 6,4 µM CDDO. The zymography gels were stained with 0.12% (w/v) Coomassie Blue G-250 prepared in 20% methanol, after 1 h fixation in a solution of 10% acetic acid and 40% methanol. Distaining was performed with 25% methanol and stained gels were scanned.
Western blot analysis
The brain tissue of each animal was homogenized in ice and lysed in a lysis buffer containing 137 mM NaCl, 20 mM Tris–HCl pH 8.0, 1% Nonidet P-40, 10% glycerol, and tablets of protease and phosphatase inhibitors. Lysates were centrifuged for 15 min at 14.000 g at 4 C. Protein concentration was measured using the Bradford assay (22). Proteins were separated on 8–15% (v/v) SDS-PAGE (sodium dodecyl sulphate–polyacrylamide) gels at room temperature (RT) and transferred onto PVDF membrane (pore size: 0.2 and 0.4 µm) at 4 oC. The nonspecific binding of immune-proteins was blocked with 5% BSA (bovine serum albumin) dissolved in Tris-buffered saline, Tween-20 (TBS-T) for 1 h at RT. After blocking, the membranes were incubated with primary mouse and human reactive APP rabbit (1:3000, Abcam - ab101492) and human reactive APP mouse (1:3000, Biolegend − 6E10 clone); LONP1 mouse (1:3000, Proteintech − 66043-1-Ig), SDHA rabbit (1:3000, SantaCruz - sc-98253), NF-kB rabbit (1:3000, Cell Signaling - #3032), GAPDH (mouse, 1:40,000; Sigma-Aldrich) antibodies in TBS-T containing 5% BSA, overnight at 4 C. After overnight incubation the membranes were rinsed in TBS-T attended by one hour of incubation with HRP-conjugated secondary antibodies at RT. The secondary HRP-conjugated antibodies were anti-rabbit, anti-mouse IgG in TBS-T containing 1% BSA (1:10,000; Jackson Immunoresearch). Between incubation times, the membranes were washed repeatedly − 4 times for 10 min - and after the last washing session, incubated with an enhanced chemiluminescent reagent (ECL Star Enhanced Chemiluminescent Substrate; Euroclone) for one minute. The protein bands were visualized on X-ray film. Bands were quantified by ImageJ 1.52 software, and total protein normalization was used for the analysis.
Quantitative Real-Time PCR
Total RNA was extracted from hemi-brain tissue samples by using Nucleo Spin RNA plus RNA isolation kit (Macherey Nagel, Düren, Germany). RNA integrity was tested on ethidium bromide stained 2% agarose gel. RNA purity was measured with DeNovix ds-11 Spectrophotometer (DeNovix, Wilmington, USA) and samples with 260/280 nm absorbance higher than 2 were considered pure and processed forward. RT-cDNA synthesis reaction was performed by Tetro cDNA Synthesis Kit (Bioline London, UK) the total input RNA was 5 µg / reaction, with random hexamer primer amplification according to the manufacture’s protocol. Synthetized cDNA was 10 diluted with PCR grade DEPC-treated water and used for PCR amplification. The mRNA level was PCR quantified by using Corbett Research RG-6000 Real Time PCR Thermocycler (QUIAGEN, USA). IMMomix mastermix (Bioline London, UK) was used. Reverse and forward primers were present at 1 µM concentration with 1% Evagreen. Primer efficiency was accepted at E = 0.90–1,1 respectively, the amplification specificity was checked by melting point analysis. The thermal profile was 50 oC for 3 min, 95 oC for 10 min, and subsequently 40 cycles of 95 oC for 20 s, 60 oC for 20 s and 72 oC for 20 s. PCR amplification were performed using the following primers: for mouse APP, forward 5’-TGTGCCAGCCAATACCGAA-3’ and reverse 5’-CCAGAACCTGGTCGAGTGGT-3’; for mouse NF-κB, forward 5’-ATGCCGAACTTCTCGGACAG-3’ and reverse 5’-GTGTTTATGGTGCCATGGGTG-3’; for SOD-1, forward 5’-GGAACCATCCACTTCGAG-3’ and reverse 5’-CTGCACTGGTACAGCCTTGT-3’; for mouse β-Actin, forward 5’-AGATCAAGATCATTGCTCCTCCT-3’ and reverse 5’-ACGCAGCTCAGTAACAGT − 3’. The primer sequences shown above were synthesized by Sigma Aldrich (Germany). Results were analysed using the software with relative quantification method and β-Actin as endogenous control was used. Fold changes in each target mRNA expression relative to β-Actin were calculated by Pfaff method and the 2−ΔΔCT method. Expression of mRNA is defined as the change in mRNA copy numbers relative to APP/PS1 control samples.
Statistical analysis
Prism 5.01 (GraphPad Software) was used for the statistical analysis. Data shown are the mean ± SEM with P < 0.05 considered statistically significant. Two-tailed, unequal variances unpaired t-tests were used for comparisons between two groups applying Welch's t-test. Group differences were analysed with Oneway analysis of variance (ANOVA) followed by Tukey’s multiple comparisons test for multiple groups. No statistical methods were used to predetermine sample sizes, but our samples sizes (mouse experiments) are like those reported in previous publications.