Experimental Overview
Rats received unilateral intrastriatal injections of either mouse α-syn PFFs or an equal volume of phosphate buffered saline (PBS) and were fed the CSF1R inhibitor PLX3397B or control chow for a period of either 60 or 180 days. At the conclusion of the experiment rats were euthanized and brain tissue analyzed. Figure 1Aillustrates the experimental design.
Rats
Three-month old, male Fischer 344 rats (Charles River) were housed, 2-3 per cage, at the Grand Rapids Research Center vivarium which is fully approved through the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC). Rats were housed in a room with a 12-hour light/dark cycle and provided food and water ad libitum. All procedures were done in accordance with the guidelines set by the Institutional Animal Care and Use Committee (IACUC) of Michigan State University.
α-syn PFF Preparation and Fibril Measurements
α-syn PFFs were generated from wild-type-full length, recombinant mouse α-syn monomers as previously described (18,31–33). Quality control was completed on full length fibrils to ensure fibril formation (transmission electron microscopy), amyloid structure (thioflavin T assay), pelletability as compared to monomers (sedimentation assay), and low endotoxin contamination (Limulus amebocyte lysate assay; <0.5 endotoxin units/mgof total protein). On surgery day, PFFs were thawed to room temperature and diluted to 4 µg/µl in sterile Dulbecco’s PBS and sonicated with an ultrasonic homogenizer (300 VT; Biologics, Inc.) for 60- 1s pulses, pulser set at 20% and power output at 30%. A sample of sonicated PFFs were prepared on Formvar/carbon-coated copper grids (EMSDIASUM, FCF300-Cu). Fibrils were then imaged with a JEOL JEM-1400+ transmission electron microscope (34). The length of ~650 fibrils was determined using ImageJ 1.53K (Wayne Rasband and contributors, National Institutes of Health, USA) (Figure 1B,C). The mean length for the 2-month surgical cohort was 35.9 ± 0.06 nm and for the 6-month surgical cohort was 34 ± 0.57 nm. Fibril length < 50 nm is required for efficient seeding of endogenous α-syn inclusions (35).
Stereotaxic Injections
Unilateral intrastriatal α-syn PFF injections were conducted as previously described (17). Rats were anesthetized with isoflurane (5% induction and 1.5% maintenance) and received unilateral intrastriatal injections to the left hemisphere (2 x 2 µl, AP +1.6, ML +2.0, DV -4.0; AP +0.1, ML +4.2, DV -5.0, AP and ML coordinates relative to Bregma, DV coordinates relative to dura). PFFs (4 µg/µl; 16 µg total) or an equal volume of PBS were injected at a rate of 0.5 µl/min with a pulled glass capillary tube attached to a 10 µl Hamilton syringe (34). To avoid PFF displacement, the needle was left in place for 1 minute following injection, retracted 0.5 mm and left for 2 minutes before fully retracted. All animals received analgesic (1.2 mg/kg of sustained release buprenorphine) after surgery and were monitored until euthanasia.
Pexidartinib Dosing
Pexidartinib chow was generously provided by Plexxikon, Inc. Rats were fed Pexidartinib chow (PLX3397B, 600mg/kg; Plexxikon Inc.; Research Diets Inc.) or control chow ad libitum for either 60 or 180 days starting on the day of PFF injections. Rat weights and collective cage food intake was tracked weekly (Supplemental Figures 1A-B, 2A-B).
Euthanasia
Rats were euthanized at 60 days (peak pSyn accumulation in the SNpc) or 180 days (peak nigral degeneration) post-surgery, pathological intervals that have been previously identified in this model (17,21,36). Rats were given a 30 mg/kg pentobarbital injection (i.p.) (Euthanasia-III Solution, MED-PHARMEX, Inc.) and perfused intracardially with heparinized 0.9% saline. Livers were removed and weighed (Supplemental Figures 1C, 2C). Brains were removed and post-fixed in 4% paraformaldehyde (PFA) for one week and then transferred to 30% sucrose in 0.1M phosphate buffer until sunk. Brains were frozen on dry ice and cut at 40 µm on a sliding microtome, sections were stored in cryoprotectant (30% sucrose, 30% ethylene glycol, in 0.1M Phosphate Buffer (PB), pH 7.3) at -20°C.
Immunohistochemistry
Free floating sections were washed 4 x 5minutes in 0.1M tris buffered saline (TBS) containing 0.5% Triton-X100 (TBS-Tx), quenched in 3% H2O2 for 1 hour, blocked in 10% normal goat serum (NGS) in TBX-Tx, and incubated overnight in primary antibody in 1% NGS/TBS-Tx at 4°C on a shaker. Primary antibodies used included: mouse anti-α-syn phosphorylated at serine 129 (pSyn) (1:10,000; Abcam, AB184674), mouse anti-tyrosine hydroxylase (TH) (1:4000; Millipore, MAB318), rabbit anti-ionized calcium binding adaptor molecule 1 (Iba1) (1:1,000; Wako, 019-09741), mouse anti-major histocompatibility complex-II (MHC Class II RT1B clone OX-6) (1:2,000; BioRad, MCA46G). Sections were washed in TBS-Tx and then incubated for 2-hours at room temperature with biotinylated secondary antibodies in 1% NGS/TBS-Tx. Secondary antibodies used included: goat anti-mouse IgG (1:500; Millipore, AP124B), goat anti-rabbit IgG (1:500, Millipore, AP132B), and horse anti-mouse IgG rat preabsorbed (for TH; 1:500; Vector Laboratories, BA-2001). Sections were washed 4 x 5 minutes in TBS-Tx and incubated in standard avidin-biotin complex detection kit (ABC, Vector Laboratories, PK-6100). Visualization for pSyn was done using 2.5 mg/ml nickel ammonium sulfate hexahydrate (Fisher, N48–500), 0.5 mg/ml diaminobenzidine (Sigma-Aldrich, D5637), and 0.03% H2O2 in TBS-Tx. TH was visualized with 0.5 mg/ml diaminobenzidine (Sigma-Aldrich, D5637), and 0.03% H2O2 in TBS-Tx. MHC-II was visualized using Vector ImmPACT DAB (brown) Peroxidase kit (Vector Laboratories; SK-4105). Iba1 was visualized with ImmPACT VIP (purple) Peroxidase Kit (Vector Laboratories; SK-4605). Sections were mounted, allowed to dry, rehydrated, then dehydrated in ascending ethanol washes and cleared with xylene before cover slipping using Epredia Cytoseal-60 (Thermo-Fischer, 22-050-262). pSyn sections were counterstained with cresyl violet before dehydration.
Immunofluorescence
Free floating sections were washed 5 x 5 minutes in TBS-Tx, blocked in 10% NGS in TBX-Tx, then incubated overnight in primary antibodies in 1% NGS/TBS-Tx at 4°C on a shaker. Primary antibodies used included: mouse anti-pSyn (1:10000; Abcam, AB184674) and rabbit anti-Iba1 (1:1,000; Wako, 019-09741). Sections were washed in TBS-Tx and then incubated for 2-hours, in the dark, at room temperature, with fluorescent conjugated secondary antibodies in 1%NGS/TBS-Tx. Secondary antibodies used included: Alexa Fluor 568 goat anti-mouse IgG (1:500, Invitrogen, A-11004), and Alexa Fluor 647 goat anti rabbit IgG (1:500, Invitrogen, A32733). Sections were then rinsed 5 x 5 minutes in TBS-Tx, incubated 1 x 5 minutes in 4',6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI) made in TBS-Tx (1:10,000, Invitrogen, D1306) and placed back in TBS-Tx for mounting. Sections were mounted and cover-slipped with VECTASHIELD Vibrance antifade mounting medium (Vector Laboratories, H-1700) and kept in the dark until imaging utilizing the Zeiss Axioscan.Z1 scanning microscope.
Total Enumeration for pSyn and MHC-II
Due to heterogeneity in the distribution of both pSyn and MHC-II immunoreactive profiles within the SN, total enumeration rather than stereological counting frames was used for quantification. The investigator was blinded to treatment groups. Total enumeration of pSyn immunoreactive (pSynir) neurons and MHC-IIir cells was conducted utilizing Microbrightfield Stereoinvestigator (MBF Bioscience). Sections containing the SN pars compacta (SNpc, 1:6 series) were used. Contours were drawn around the SNpc at 4X, a 20x magnification was then used for identification and counting. Counts represent the raw total number multiplied by six. Data are reported as total estimates of pSynir neurons or MHC-IIir cells in each hemisphere.
Stereological Assessment of Nigral TH Immunoreactive Neurons
The number of THir neurons in the ipsilateral and contralateral SNpc was estimated using unbiased stereology with the optical fractionator principle. The investigator was blinded to treatment groups. Using a Nikon Eclipse 80i microscope, Retiga 4000R camera (QImaging) and Microbrightfield StereoInvestigator software (Microbrightfield Bioscience, Williston, VT), THir neuron quantification was completed by drawing a contour around the SNpc borders using the 4X objective on every sixth and counting neurons according to stereological principles at 60X magnification. Briefly, counting frames (50 µm x 50 µm) were systematically and randomly distributed over a grid (183 µm x 122 µm) overlaid on the SNpc. A coefficient of error < 0.10 was accepted. Data are reported as total estimate of THir neurons in each hemisphere.
Microglia Soma Size and Number
Nigral sections were fluorescently labeled for pSyn and Iba1. The investigator was blinded to treatment groups. Utilizing the Zeiss Axioscan.Z1 scanning microscope, Z-Stacks images at 20X were obtained and three consecutive nigral sections representing the sections with the highest number of pSynir neurons were analyzed with Nikon Elements AR (Version 4.50.00, Melville, NY). All Iba1ir soma were outlined, excluding processes, and the number of individual microglial objects calculated. Data for soma size is reported as the number of pixels per outlined microglia soma. The HALO® (Indica Labs) image analysis module “Area quantification v1.0 for brightfield” was used to calculate total pSyn signal in the striatum and MHC-II signal in the mesencephalon.
Statistical Analysis
All statistical tests were completed using GraphPad Prism software (version 9, GraphPad, La Jolla, CA). Outliers were assessed via the absolute deviation from the median method (37) utilizing the very conservative difference of 2.5X median absolute deviation as the exclusion criteria. Statistical significance was set to α ≤ 0.05. Comparisons were made across all groups using two-way analysis of variance (ANOVA) with a post-hoc Tukey test with the following exceptions: Two-way ANOVA with repeated measures was used for comparisons of food intake over time, Student’s T-test (two-tailed) was used for comparisons in pSyn accumulation in the striatum between PFF injected PLX3397B and control rats, two-way ANOVA with post-hoc Tukey test comparisons in THir neurons in the SNpc were made within each brain hemisphere separately.