1. To verify the role of MYCN and miR-20a-5p in neuroblastoma.
In order to reveal the role of MYCN and miR-20-5p in NB, the expression of MYCN mRNA in SK-N-BE (2) cells and SH-SY5Y cells was measured by qRT-PCR. The results showed that the expression of MYCN mRNA in SK-N-BE (2) cells was significantly higher than that in SH-SY5Y cells (t(df) = 5.089(4), p = 0.007,Fig. 1A). The MYCN gene was amplified in SK-N-BE (2) cells. Next, qRT-PCR was used to detect the expression of miR-20-5p in SK-N-BE (2) cells with MYCN gene amplification and SH-SY5Y cells without MYCN gene amplification. The results showed that the expression of miR-20-5p in SK-N-BE (2) cells was significantly higher than that in SH-SY5Y cells (t (df) = 4.04 (4), p = 0.016, Fig. 1C).In SK-N-BE (2) cells, after overexpressing and knocking down miR-20a-5p, we found that the change in miR-20a-5p mRNA expression was accompanied by a change in MYCN mRNA (t(df) = 2.987(4),p = 0.04; t(df) = 4.485(4),p = 0.0084;Fig. 1B). The proliferation, invasion and migration of the two cell lines were detected by cell counting kit-8 assays, transwell invasion assays and wound healing assays.The proliferation (t (df) = 2.684 (4), p = 0.004, Fig. 1D), invasion (t (df) = 6.182 (4), p = 0.003, Fig. 1E) and migration (t (df) = 4.690 (4), p = 0.009, Fig. 1F) of SK-N-BE (2) cells with MYCN gene amplification were statistically significantly increased compared with SH-SY5Y cells.The above results further verify the role of MYCN and miR-20a-5p in NB at the cellular level, indicating that MYCN and miR-20a-5p can enhance the proliferation, invasion and metastasis of NB.
2. Detection of miR-20a-5p expression after transfection by qRT–PCR
The overexpressed and depressed lentivirus particles miR-20a-5p and its control group lentivirus were infected with the SK-N-BE(2) cell line and SH-SY5Y cell line, respectively. After 72 hours, the expression rate of green fluorescent protein in each group was more than 80% (Fig. 2A and 2B).After successful transfection, puromycin was used to screen the cell lines with stable overexpression and knockdown of miR-20a-5p for qRT-PCR detection.The results of qRT-PCR detection showed that the expression level of miR-20a-5p in SK-N-BE (2) cells was significantly higher than that in the control group(t(df) = 2.837(4), p = 0.045, Fig. 2C),and the expression level after knockdown of miR-20a-5p was significantly lower than that in the control group (t (df) = 3.015 (4), p = 0.038, Fig. 2C).In SH-SY5Y cells, the expression level of miR-20a-5p was significantly higher than that of the control group (t(df) = 3.578(4),p = 0.023, Fig. 2D), the expression level after knocking down miR-20a-5p was significantly lower than that in the control group(t(df) = 11.12(4), p = 0.0004, Fig. 2D). The above results show that our stable overexpression and stable knockout of miR-20a-5pin the NB cell line was successful.
3. miR-20a-5p promotes the proliferation, invasion, migration and apoptosis of NB.
Transwell invasion assays showed that the number of invaded SK-N-BE (2) cells increased significantly after overexpression of miR-20a-5p (t (df) = 10.78 (4), p = 0.004, Fig. 3C). After knocking down miR-20a-5p, the invasiveness of invaded SK-N-BE (2) cells was significantly lower than that of short hairpin negative control group (sh NC) (t (df) = 15.01 (4), p = 0.001, Fig. 3C). After overexpression of miR-20a-5p in SH-SY5Y cells, the number of invaded cells also increased significantly (t (df) = 32.33 (4), p < 0.0001). Figure 3D). After knockdown miR-20a-5p, the invasiveness of SH-SY5Y cells was significantly lower than that of short hairpin negative control group (sh NC) (t (df) = 9.525 (4), p = 0.0007, Fig. 3C). Among them, the proliferation ability of SH-SY5Y cells increased significantly after overexpression of miR-20a-5p (t (df) = 35.08 (4), p < 0.0001), while that of SK-N-BE (2) cells decreased significantly after knockdown miR-20a-5p (t (df) = 16.06 (4), p < 0.0001). These results suggest that miR-20a-5p can promote the invasion of NB cells.
Wound healing experiments showed that after overexpression of miR-20a-5p, the healing rate of SK-N-BE (2) cells was (72.00 ± 4.50)%, while that of oe NC cells was (54.12 ± 1.56)%. There was a significant difference (t (df) = 5.493 (4), p = 0.005, Fig. 3C). After knocking down miR-20a-5p, the healing rate of SK-N-BE (2) cells was (43.60 ± 2.04)%, while that of the sh NC group was (52.15 ± 0.87)%. There was a significant difference (t(df) = 6.864 (4), p = 0.002). Figure 3E). After overexpression of miR-20a-5p, the healing rate of SH-SY5Y cells was (24.33 ± 1.24)%, while that of oe NC cells was (44.18 ± 1.16)% (t (df) = 6.127 (4), p = 0.0036, Fig. 3F). After knocking down miR-20a-5p in SH-SY5Y cells, the healing rate was (24.33 ± 1.24)%, and that in sh NC group was (43.3 ± 2.72)%. There was significant difference (t (df) = 12.85,p = 0.0002, Fig. 3F). The migration ability of SH-SY5Y cells was significantly enhanced after overexpression of miR-20a-5p (t (df) = 24.277 (4), p < 0.0001, Fig. 3F). However, the migration ability of SK-N-BE (2) cells decreased significantly after miR-20a-5p knockdown(t (df) = 8.042 (4), p = 0.001). The above results indicate that miR-20a-5p regulates the migration of NB cells.
Flow cytometry showed that the early apoptosis rates of SK-N-BE (2) and SH-SY5Y cells increased significantly after knockdown of miR-20a-5p. The results showed that miR-20a-5p significantly increased the viability of NB cells (t (df) = 7.143 (4), p = 0.002 Fig. 4A ; t(df) = 10.45,p = 0.0005, Fig. 4B).
After overexpression or downregulation of miR-20a-5p in SK-N-BE (2) cells, the results of cell counting kit-8 assay showed that there was significant difference in cell proliferation between the oe miR-20a-5p group and the oe NC group at 24 h, 48 h and 72 h (t (df) = 2.435 (3), p = 0.02.Fig.C ). There were significant differences in cell proliferation in the short-hair R-20a-5p (shR-20a-5p) group at 24 h, 48 h and 72 h (t (df) = 2.630 (3), p = 0.009, Fig. 4.E). After overexpression or downregulation of miR-20a-5p in SH-SY5Y cell line, except for 0 h, at 24 h, 48 h and 72 h, the results of the cell counting kit-8 assay showed that there was significant difference in cell proliferation between the oe miR-20a-5p group and the oe NC group (t (df) = 2.032 (3), p = 0.0029,Fig. D). There was a significant difference in cell proliferation in the short-hair R-20a-5p (shR-20a-5p) group (t (df) = 3.272 (3), p = 0.006, Fig.F). The results showed that the proliferation ability of NB cells was enhanced after overexpression of miR-20a-5p, and decreased after downregulation of miR-20a-5p. Notably, overexpression of miR-20a-5p can significantly enhanced the proliferation of SH-SY5Y cells, while knockdown of miR-20a-5p can significantly reduced the proliferation of SK-N-BE (2) cells (t(df) = 2.123 (3), p = 0.0004, Fig. 4G). It is suggested that miR-20a-5p plays an important role in regulating the proliferation of NB.
4. miR-20a-5p activates the NF- κB pathway through downregulation of NFKBIB in NB
Based on the prediction of miR-20a-5p targets by bioinformatics analysis, we found that NFKBIB is a hypothetical target (Fig. 5.A) of miR-20a-5p. Then double luciferase experiment showed that overexpression of miR-20a-5p decreased the luciferase activity of NFKBIB, while the luciferase activity of other groups changed little, indicating that there was a specific interaction between miR-20a-5p and NFKBIB (t (df) = 22.76(6), p = 2, Fig. 5.B). Subsequently, we measured by qRT-PCR that the overexpression of miR-20a-5p in NB cells was accompanied by the downregulation of NFKBIB expression (t (df) = 3.876 (4), pendant 0.01, Fig. 5C; t (df) = 18.64 (4), p < 0.0001), and the downregulation of miR-20a-5p was accompanied by the upregulation of NFKBIB expression (t (df) = 3.876 (4), p = 0.017, Fig. 5C);t (df) = 3.724 (4), p = 0.02, Fig. 5.D).
The expression of NFKBIB and NF- κB in the two cell lines was detected by Western blotting. The results showed that the expression level of NFKBIB in SK-N-BE (2) cells with MYCN amplification was significantly lower than that in SH-SY5Y cells without amplification (t (df) = 9.256 (4), p = 0.0008, Fig. 5E.a), and the expression level of NF-κB in SH-SY5Y cells without MYCN gene mplification was significantly higher than that in SH-SY5Y cells without MYCN gene amplification (t (df) = 2.975 (4), p = 0.04, Fig. 5E). In SK-N-BE (2) cells, the overexpression of miR-20a-5p was upregulated with the expression of NF- κ B (t (df) = 10.39 (6), p < 0.0001, Fig. 5F.b) and the expression of NFKBIB was downregulated (t (df) = 4.173 (6), paired 0.059, Fig. 5F.a). After knocking down miR-20a-5p, the expression of NFKBIB was significantly downregulated (t (df) = 3.699 (6), p = 0.0101 Fig. 5F.a), and the expression of NF- κ B was significantly up-regulated (t (df) = 5.258 (6), p = 0.019, Fig. 5F.b). In SH-SY5Y cells, miR-20a-5p overexpression was accompanied by up-regulation of NF- κB expression (t(df) = 10.48 (6), p < 0.0001, Fig. 5G.b) and down-regulation of NFKBIB expression (t(df) = 6.397 (6), p = 0.0007). Figure 5G.a). After knocking down miR-20a-5p, the expression of NFKBIB was significantly downregulated (t (df) = 6.609 (6), p = 0.0006, Fig. 5G.a), and the expression of NF- κB was significantly upregulated (t (df) = 2.496 (6), p = 0.0468). Figure 5G.b). These results suggest that miR-20a-5p can downregulate the expression of NFKBIB in NB and activate NF- κ B pathway.