Animals
Male Swiss Webster mice (Harlan Sprague Dawley, Inc. Fredrick, MD, USA) six-eight weeks old, weighing 25–30 g, were housed five to a cage with ad libitum access to food and water in animal care quarters maintained under a 12-hour light/dark cycle (lights on from 7 am to 7 pm). Animals were randomly assigned to control and treatment groups. All animal procedures were in accordance with the protocols reviewed and approved by the Institutional Animal Care and Use Committee at Virginia Commonwealth University (VCU IACUC). Results of the animal experiments were reported in accordance with the recommendations of the ARRIVE 2.0 guidelines.
Test Drugs:
Morphine:
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75-mg morphine or placebo pellets, obtained from the National Institute on Drug Abuse (NIDA, Bethesda MD), were aseptically implanted in the subcutaneous cavity on the dorsum under isoflurane (2.5%) anesthesia as described previously11. Mice were allowed to recover in their home cages. On test day 7, the mice were subjected to antinociceptive response experiments (Figs. 1 and 3B); used for fecal microbiome analysis (Figs. 1, S1, and S2); for harvesting blood, stool, and colon tissue for evaluating butyrate concentration (Fig. 2); for measuring intestinal epithelial permeability (Fig. 4A); in antibacterial activity experiments (Figs. 5 and 7); or for evaluating Regenerating islet-derived 3 gamma (Reg3γ) gene expression in the ileum (Fig. 6A) as described in the subsequent methods sections. Each animal was used only once.
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Morphine sulfate (National Institute on Drug Abuse Drug Supply Program, Bethesda, MD) was diluted in saline to 1, 2, 4, and 8 mg/mL. Mice were injected intraperitoneally twice daily with saline or increasing doses of morphine as follows: Day 1–20 mg/kg morphine, Day 2–40 mg/kg morphine, Day 3–40 mg/kg morphine, and Day 4–80 mg/kg morphine. Mice were used on test day 5 in the warm-water tail-withdrawal experiment in Fig. 3A, for evaluating intestinal epithelial permeability in Fig. 4B, for measuring the expression of Reg3γ in Fig. 6B, and in antibacterial activity experiments in Fig. 8 as described in the following methods. Each animal was used only once.
Sodium butyrate: Sodium butyrate (ThermoFisher Scientific, Waltham, MA) was prepared in saline at concentrations of 0.125, 0.250, 0.500, and 1.000 M and administered twice daily by oral gavage. For the dose-response experiment in Fig. 3A, mice injected with ramping doses of morphine (as described above) were orally administered saline or different concentrations of sodium butyrate (0.125, 0.250, 0.500, or 1.000 M) for four days. Antinociception was measured on day 5 using the warm-water tail-withdrawal test described below. In all subsequent experiments, 0.250 M sodium butyrate or its vehicle, saline, was administered twice daily through oral gavage. The number of treatments with sodium butyrate was contingent on the duration of exposure to morphine, such that mice subcutaneously implanted with pellets were administered 0.250 M sodium butyrate for six days (Figs. 3B, 5, 6B, 7, and S2), and mice injected with ramping doses of morphine received 0.250 M sodium butyrate for four days (Figs. 3A, 4B, and 6B).
Naloxone HCl: Naloxone HCl (Sigma-Aldrich, St. Louis, MO) was prepared in saline at concentrations of 0.2, 0.4, and 0.8 mg/mL and injected intraperitoneally twice daily at escalating doses 10 minutes before the administration of morphine sulfate in the following manner: Day 1–2 mg/kg naloxone, Day 2–4 mg/kg naloxone, Day 3–4 mg/kg naloxone, and Day 4–8 mg/kg naloxone. The doses of naloxone were 1/10th of the doses of morphine sulfate. Ileum tissue was collected on day 5 for use in the antibacterial activity assay in Fig. 8.
Fecal Microbiota Transplant (FMT): Fresh fecal pellets (100 mg) from placebo or morphine-pelleted mice were collected on day 7 and suspended in 1.2 mL of cold (4°C) phosphate- buffered saline (PBS) containing 10% glycerol. The suspension was homogenized and then centrifuged at 800xg for three minutes. The supernatant was transferred to a separate tube and stored at -80°C. The concentration of total bacteria was determined by measuring optical density (OD), such that OD = 0.5 represented 1x108 cells. 100 µL of the fecal supernatant (1 x 109 cells/dose) was then administered twice daily for six days to recipient mice groups via oral gavage according to the following scheme: 1. Placebo-pelleted mice that did not receive fecal microbiota transplants (PP-Sham), 2. Morphine-pelleted mice that did not receive fecal microbiota transplants (MP-Sham), 3. Placebo-pelleted mice that received fecal microbiota from placebo-pelleted donor mice (PP + PP-FMT), 4. Morphine-pelleted mice that received fecal microbiota from placebo-pelleted donor mice (MP + PP-FMT), 5. Placebo-pelleted mice that received fecal microbiota transplants from morphine-pelleted donor mice (PP + MP-FMT), and 6. Morphine-pelleted mice that received fecal microbiota transplants from morphine-pelleted donor mice (MP + MP-FMT) (Fig. 1C).
Antinociceptive response tests: The warm-water tail-withdrawal and hot-plate assays were used in the present study. In the warm-water tail-withdrawal test, the distal 1/3 tail was immersed in a water bath at 56°C. The latency to withdraw the tail from the warm water was recorded. A maximum cutoff of 10 seconds was set to prevent tissue damage. On test day 7 in pelleted mice (Figs. 1D and 3B) and test day 5 in injected mice (Fig. 3A), baseline responses were recorded, following which the mice received acute morphine (10 mg/kg s.c.). 25 minutes later, tail-flick latencies were recorded to test for the development of tolerance to the 10 mg/kg morphine challenge. Antinociception induced by 10 mg/kg morphine was quantified as the percentage of maximum possible effect (%MPE), such that: %MPE = [(challenge latency − baseline latency) / (Maximum cutoff − baseline latency)] x 100.
In the hot-plate assay, individual mice were placed on a Syscom Model 35D hot-plate set at 56°C, and the latency to lick their hind paw or jump was recorded. A maximum cutoff of 30 seconds was set to prevent tissue damage. Baseline responses were recorded on test day 7 in pelleted mice (Fig. 1E), following which the mice were injected with acute morphine (10 mg/kg s.c.). 25 minutes later, hot-plate responses were measured again to test for the development of tolerance to the acute morphine challenge. Antinociception induced by 10 mg/kg morphine was quantified as %MPE as described above.
Detection of butyrate in blood, colon, and stool: Blood, colon tissue samples, and fecal material were collected from morphine or placebo-pelleted mice on day 7. Samples were immediately homogenized 1:4 with deionized water and stored at -30°C. Seven-point calibration curves of 10-1000 µg/g butyrate (Sigma-Aldrich, St. Louis, MO), a butyrate-free control, and a negative control free of butyrate and the internal standard (ISTD) were prepared. Butyrate was extracted and analyzed using a modified previously published method82. In brief, 100 µL of methanol containing 20 µg butyrate-1,2-13C2 (Sigma-Aldrich, St. Louis, MO), the ISTDs, was added to 0.20 g aliquots of each calibrator, control, or specimen except the negative control. Samples were mixed for five minutes, centrifuged for 30 minutes, and then left for 30 minutes at 4°C. 100 µL of the clear supernatant was transferred into a new tube and washed with 100 µL propyl formate. Samples were mixed for five minutes and centrifuged for 30 minutes before transferring 50 µL of the organic layer to GC vials for analysis. Gas chromatography-mass spectrometer (GC-MS) analysis was performed on a Shimadzu GC/MS-QP2020 NX Single Quadrupole GC-MS (Shimazu, Kyoto, Japan) controlled by GCMS solution software (Shimadzu, Kyoto, Japan). Chromatographic separation was performed using a ZB-FFAP column, 30 m x 32mm, 0.25 µm (Phenomenex, Torrance, CA). A sample volume of 2 µL was injected in splitless mode with an injector temperature of 200°C. The carrier gas was Helium with a 2 mL/minute flow rate. The initial oven temperature of 55°C was held for four minutes, then ramped to 130°C at 50°C/minute and held for 3.7 minutes. Finally, the temperature was raised to 250°C at 30°C/minute and held for two minutes. Linear regression of the peak area of ratios of the quantification ion for butyrate (72 m/z) and the ISTD quantification ion (75 m/z) was used to construct the calibration curves. For each analytical run, the coefficient of determination (r2) was higher than 0.996. The concentrations of each calibrator were determined to be within ± 20% of their expected concentration.
Intestinal permeability assay
On the test day, i.e., day 7 in pelleted mice and day 5 in intermittently injected mice, animals were orally gavaged with FITC-conjugated dextran (100 mg/ml in PBS, Sigma-Aldrich, St. Louis, MO) at a dose of 44 mg/100 g body weight of FITC-labeled dextran. After four hours, mice were anesthetized with isoflurane, and 300–500 µl of blood was collected by cardiac puncture. Serum collected from blood samples by centrifugation for 15 minutes at 1500xg and 4°C was diluted with an equal volume of PBS. 100 µl of diluted serum was transferred to a 96-well plate, and FITC concentration was fluorometrically quantified by emission spectrometry (Promega, Madison, WI) at 528 nm using an excitation wavelength of 485 nm. Serum from mice not administered FITC-dextran was used to determine background. All concentrations were measured against a standard curve of serially diluted FITC-dextran.
Bactericidal activity assay
The bactericidal activity assay was performed based on the procedure described by Udden et al.83.
Preparation of conditioned media from ileum tissue samples: 4–5 cm of the distal ileum was resected and immediately flushed with sterile-filtered ice-cold PBS to remove digesta. Ileum tissue samples were cut longitudinally, rinsed in sterile-filtered ice-cold PBS, and weighed. Tissue samples were disinfected in 5 ml DMEM/F12 media supplemented with 5% FBS and 1x antibiotics (penicillin, streptomycin, and vancomycin) for two hours at 37°C in a 95%O2/5%CO2 incubator. After disinfection, residual antibiotics were washed off by rinsing the samples three times with 5 ml antibiotic-free DMEM/F12 media supplemented with 5% FBS. Rinsed ileum tissue samples were then cut into 1 cm pieces using sterile scissors and transferred to 12-well cell culture plates containing fresh antibiotic-free DMEM/F12 media supplemented with 5% FBS. 1 ml of DMEM/F12 supplemented with 5% FBS was used per 100 mg of tissue. Samples were incubated at 37°C in an incubator with 5% CO2 and 95% O2 for 12 hours. Tissue supernatants (or conditioned media) were subsequently transferred into sterile 1.5 ml centrifuge tubes. Tissue debris was sedimented by centrifugation at 12,000 x g at 4°C for five minutes, and the conditioned media was used for the antibacterial activity assay.
Antibacterial activity assay: The prototypical Gram-negative bacteria, Escherichia coli (E. coli strain HB101), was inoculated in 5 ml of Luria-Bertani (LB) broth and incubated overnight at 37°C with constant shaking at 250 rpm. Cultured bacteria were collected by centrifugation at 1,200 x g for 10 minutes at 4°C and then resuspended in fresh LB broth at a final concentration of 1x105 cells/mL. 20 µL of the diluted bacteria were added to 500 µL of the ileum-derived conditioned media and incubated for one hour in an incubator maintained at 37°C and 95% O2/5% CO2. An additional 20 µL of the diluted bacteria were incubated with 500 µL of DMEM/F12 media supplemented with 5% FBS and 1 x antibiotics (penicillin, streptomycin, and vancomycin; positive internal control) and with 500 µL antibiotic-free DMEM/F12 media containing 5% FBS (negative internal control). 500 µL of the ileum-derived conditioned media supplemented with 20 µL of fresh LB broth was also incubated along with the other samples to check for the presence of contamination (sham control). Thus, an experiment with each ileum-derived conditioned media constituted four groups: A) ileum supernatant + E. coli, B) ileum supernatant + LB broth, C) negative control, and D) positive control. A BHI agar plate was divided into four quadrants, and 50 µL per group was evenly applied to each quadrant. The agar plate was incubated at 37°C, and bacterial colonies were counted 15–18 hours later. The experiment was repeated for ileum supernatants prepared from different mice.
The prototypical Gram-positive bacteria, Lactobacillus reuteri (L.reuteri strain ATCC 53608), was cultured in de Man, Rogosa, and Sharpe (MRS) broth supplemented with 0.001% Tween 80 in a 95% O2/5% CO2 incubator maintained at 37°C. The cultured bacteria were collected by centrifugation, resuspended in fresh MRS broth, and serially diluted to a final concentration of 1 x 105 cells/mL. The activity of the ileum tissue supernatants against L. reuteri was tested using the methodology described above for E. coli. Briefly, each ileum tissue supernatant experiment consisted of four groups: A) ileum supernatant + L.reuteri, B) ileum supernatant + MRS broth, C) DMEM/F12 media + 5% FBS + L.reuteri (negative control), and D) DMEM/F12 media + 5% FBS + 1x antibiotics (penicillin, streptomycin, and vancomycin) + L.reuteri (positive control). 50 µL per group was uniformly smeared onto MRS agar plates divided into four quadrants, and the total number of bacterial colonies formed was determined after incubation for 15–18 hours.
RNA isolation and qRT-PCR: Total RNA was extracted from the ileum of placebo or morphine-pelleted mice orally administered with FMT on day 7 and from the ileum of mice injected repeatedly with saline or morphine and orally administered with 0.250 M sodium butyrate or its vehicle, saline, on day 5 using TRIzol reagent (ThermoFisher Scientific, Waltham, MA). RNA samples were treated with DNase 1 (RNase-free, ThermoFisher Scientific, Waltham, MA) to remove DNA contamination. Quantitative real-time polymerase chain reaction (qRT-PCR) was performed on a Mini-Opticon real-time PCR system (Bio-Rad, Hercules, CA) by using the iTaq Universal SYBR Green One-Step kit (Bio-Rad, Hercules, CA) as described previously33. Gapdh was used as the internal control. Primers used in this study were: murine Reg3γ forward, 5′-CGTGCCTATGGCTCCTATTGCT-3′; murine Reg3γ reverse, 5′-TTCAGCGCCACTGAGCACAGAC-3′; murine Gapdh forward 5′-CCATGGAGAAGGCTGGGG-3′; and murine Gapdh reverse 5′-CAAAGTTGTCATGGATGACC-3′ (Integrated DNA Technologies, Inc., Skokie, Illinois).
Microbiome profiling
Fecal pellets were collected from saline-treated placebo-pelleted, butyrate-treated placebo-pelleted, saline-treated morphine-pelleted, and butyrate-treated morphine-pelleted mice. DNA was extracted using the QIAamp Fast DNA Stool Mini Kit according to the manufacturer’s protocols, and DNA was sent to CosmosID (Cosmosid Inc, Rockville, MD) and subjected to whole shotgun sequencing using the Illumina platform. An average of 5.921M reads per sample was achieved with a minimum of 4.514M reads and a maximum of 8.816M reads. CosmosID’s k-mer based approach was used for taxonomic identification by comparing sequences to an in-house database. Profiles were analyzed using the filtered species-level data containing 297 bacterial species. Counts were renormalized to the mean number of reads with a pseudo count added to each bacterial species count and the counts were log10 transformed.
Blinding
Experimenters were not blinded while performing experiments. However, separate investigators conducted the experiments to ensure reliability of results.
Data analysis:
Warm-water tail-withdrawal test and hot-plate test: Data represented as %MPE in Fig. 1 were evaluated by two-way ANOVA with FMT treatment and morphine treatment as the two independent variables. The Tukey’s multiple comparisons test was used for post hoc analysis. Data represented as %MPE in Fig. 3A were evaluated by two-way ANOVA with butyrate dose and morphine treatment as the two independent variables, and in Fig. 3B, by two-way ANOVA with butyrate treatment and morphine treatment as the two independent variables. Tukey’s post hoc test was used for multiple comparisons between groups.
Butyrate levels in blood, colon, and stool: Data in Fig. 2A were analyzed by two-way ANOVA with butyrate treatment and morphine treatment as the independent variables. Tukey’s multiple comparisons test was used for post hoc analysis. Data in Figs. 2B and 2C were analyzed by unpaired two-tailed Student’s t-test.
Intestinal permeability assay: Serum concentrations of FITC-dextran were evaluated in Fig. 4A by two-way ANOVA with FMT treatment and morphine treatment as the independent variables and in Fig. 4B by two-way ANOVA with butyrate treatment and morphine treatment as the independent variables. Tukey’s post hoc test was used for multiple comparisons between groups.
Bactericidal activity assay: The total number of bacterial colonies formed on agar plates were converted to colony forming units (CFU)/mL, such that CFU/mL = (number of colonies x dilution factor) / 50 µL. Data in Figs. 5A-C and 7A-D were evaluated by repeated-measures one-way ANOVA with the media as the independent variable. Tukey’s post hoc test was used for multiple comparisons between groups. CFU/mL data were transformed into percent bactericidal activity in Figs. 5D, 6E, and 8, such that % Bactericidal activity = {[(CFU/mL of antibiotic-free DMEM/F12 media + bacteria) - (CFU/mL of Ileum supernatant + bacteria)] / (CFU/mL of antibiotic-free DMEM/F12 media + bacteria)} * 100. Data in Fig. 5D was assessed by one-way ANOVA with treatment as the independent variable. The Holm-Sidak post hoc test was used for multiple comparisons between groups. Data in Fig. 7E was evaluated by two-way ANOVA with butyrate treatment and morphine treatment as the two independent variables. Multiple comparisons between groups were made using Tukey’s post hoc test. Data in Fig. 8 was evaluated by one-way ANOVA with treatment as the independent variable. Tukey’s multiple comparisons test was used for post hoc analysis.
qRT-PCR: Relative expression of Reg3γ to Gapdh was calculated using the 2−ΔΔCt method, and values were expressed as fold change. Data were analyzed in Fig. 6A by two-way ANOVA with FMT treatment and morphine treatment as the independent variables and in Fig. 6B by two-way ANOVA with butyrate treatment and morphine treatment as the independent variables. Multiple comparisons between groups were made using Tukey’s post hoc test.
The threshold for statistical significance was P < 0.05. Post hoc analysis of the ANOVA was performed only for significant main effects or significant interactions. GraphPad Prism (version 9.4.1) was used for data analysis. Data are presented as mean ± SEM.
Microbiome analysis: The Permutational multivariate analysis of variance (PERMANOVA) using the Bray–Curtis dissimilarity index was utilized to evaluate the beta diversity of the fecal bacteria between the different groups. Results of the statistical analysis were obtained using the CosmosID Hub. The alpha diversity index, Chao1, for all the groups was determined using the CosmosID Hub. The data were analyzed by unpaired two-tailed Student’s t-test or two-way ANOVA, and Tukey’s post hoc test was used for pairwise comparisons using GraphPad Prism (version 9.4.1).