Becht E, McInnes L, Healy J, Dutertre CA, Kwok IWH, Ng LG, et al. (2018). Dimensionality reduction for visualizing single-cell data using UMAP. Nature biotechnology,
Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ. (2013). Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods,10:1213-1218.
Cabillic F, Rougier N, Basset C, Lecouillard I, Quelvennec E, Toujas L, et al. (2006). Hepatic environment elicits monocyte differentiation into a dendritic cell subset directing Th2 response. Journal of hepatology,44:552-559.
Carey JCJMogs. (2005). Trisomy 18 and trisomy 13 syndromes.
Cereda A, Carey JC. (2012). The trisomy 18 syndrome. Orphanet J Rare Dis,7:81.
Cervelló I, Mirantes C, Santamaria X, Dolcet X, Matias-Guiu X, Simón C. (2011). Stem cells in human endometrium and endometrial carcinoma. International journal of gynecological pathology : official journal of the International Society of Gynecological Pathologists,30:317-327.
Clevenger J, Chavarro C, Pearl SA, Ozias-Akins P, Jackson SA. (2015). Single Nucleotide Polymorphism Identification in Polyploids: A Review, Example, and Recommendations. Mol Plant,8:831-846.
Criscuolo A, Brisse S. (2013). AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads. Genomics,102:500-506.
Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, et al. (2018). A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility. Cell,174:1309-1324.e1318.
Edwards JH, Harnden DG, Cameron AH, Crosse VM, Wolff OH. (1960). A new trisomic syndrome. Lancet,1:787-790.
Fisher JM, Harvey JF, Morton NE, Jacobs PA. (1995). Trisomy 18: studies of the parent and cell division of origin and the effect of aberrant recombination on nondisjunction. Am J Hum Genet,56:669-675.
FitzPatrick DR, Ramsay J, McGill NI, Shade M, Carothers AD, Hastie ND. (2002). Transcriptome analysis of human autosomal trisomy. Human molecular genetics,11:3249-3256.
Goel N, Morris JK, Tucker D, de Walle HEK, Bakker MK, Kancherla V, et al. (2019). Trisomy 13 and 18-Prevalence and mortality-A multi-registry population based analysis. Am J Med Genet A,179:2382-2392.
Gonçalves DU, Proietti FA, Ribas JG, Araújo MG, Pinheiro SR, Guedes AC, et al. (2010). Epidemiology, treatment, and prevention of human T-cell leukemia virus type 1-associated diseases. Clinical microbiology reviews,23:577-589.
González J, Muñoz A, Martos G. (2016). Asymmetric latent semantic indexing for gene expression experiments visualization. J Bioinform Comput Biol,14:1650023.
Kellner J, Li S, Zweidler-McKay PA, Shpall EJ, McNiece I. (2015). Phenotypic and functional comparison of mobilized peripheral blood versus umbilical cord blood megakaryocyte populations. Cytotherapy,17:418-427.
Kobak D, Berens P. (2019). The art of using t-SNE for single-cell transcriptomics. Nature communications,10:5416.
Kupke KG, Müller U. (1989). Parental origin of the extra chromosome in trisomy 18. Am J Hum Genet,45:599-605.
Lei CY, Wang W, Zhu YT, Fang WY, Tan WL. (2016). The decrease of cyclin B2 expression inhibits invasion and metastasis of bladder cancer. Urologic oncology,34:237.e231-210.
Makrydimas G, Plachouras N, Thilaganathan B, Nicolaides KH. (1994). Abnormal immunological development in fetuses with trisomy 18. Prenat Diagn,14:239-241.
Murai J, Tang SW, Leo E, Baechler SA, Redon CE, Zhang H, et al. (2018). SLFN11 Blocks Stressed Replication Forks Independently of ATR. Molecular cell,69:371-384.e376.
Neal JT, Li X, Zhu J, Giangarra V, Grzeskowiak CL, Ju J, et al. (2018). Organoid Modeling of the Tumor Immune Microenvironment. Cell,175:1972-1988.e1916.
Paton GR, Silver MF, Allison AC. (1974). Comparison of cell cycle time in normal and trisomic cells. Humangenetik,23:173-182.
Quinlan AR, Hall IM. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics,26:841-842.
R Z, L H, L W, M C, W L, R L, et al. (2013). Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes.S8.
Roy A, Cowan G, Mead AJ, Filippi S, Bohn G, Chaidos A, et al. (2012). Perturbation of fetal liver hematopoietic stem and progenitor cell development by trisomy 21. Proceedings of the National Academy of Sciences of the United States of America,109:17579-17584.
Satgé D, Nishi M, Sirvent N, Vekemans M. (2016). A tumor profile in Edwards syndrome (trisomy 18). Am J Med Genet C Semin Med Genet,172:296-306.
Satpathy AT, Granja JM, Yost KE, Qi Y, Meschi F, McDermott GP, et al. (2019). Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion. Nature biotechnology,37:925-936.
Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ. (2015). Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions. Genome research,25:1757-1770.
Sinha D, Kumar A, Kumar H, Bandyopadhyay S, Sengupta D. (2018). dropClust: efficient clustering of ultra-large scRNA-seq data. Nucleic Acids Res,46:e36.
Smith DW, Patau K, Therman E, Inhorn SL. (1960). A new autosomal trisomy syndrome: multiple congenital anomalies caused by an extra chromosome. J Pediatr,57:338-345.
Stuart T, Butler A, Hoffman P, Hafemeister C, Papalexi E, Mauck WM, 3rd, et al. (2019). Comprehensive Integration of Single-Cell Data. Cell,177:1888-1902.e1821.
Torres EM, Williams BR, Amon A. (2008). Aneuploidy: cells losing their balance. Genetics,179:737-746.
Yao X, Williamson C, Adalsteinsson VA, D'Agostino RS, Fitton T, Smaroff GG, et al. (2014). Tumor cells are dislodged into the pulmonary vein during lobectomy. The Journal of thoracic and cardiovascular surgery,148:3224-3231.e3221-3225.
Younes A, Jendiroba D, Engel H, Escudier S, Katz R, Rodriguez MA, et al. (1994). High incidence of monosomy 18 in lymphoid malignancies that have bone marrow and peripheral blood involvement. Cancer genetics and cytogenetics,77:39-44.
Zhang R, Hao L, Wang L, Chen M, Li W, Li R, et al. (2013). Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes. BMC genomics,14 Suppl 5:S8.
Zheng C, Zheng L, Yoo JK, Guo H, Zhang Y, Guo X, et al. (2017a). Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing. Cell,169:1342-1356.e1316.
Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, et al. (2017b). Massively parallel digital transcriptional profiling of single cells. Nature communications,8:14049.