Chemicals and Primary antibodies
Luria-Bertani broth (Himedia); Ampicillin, NaCl, Phenylmethylsulfonylfluoride (PMSF), MgCl2, APS, DMSO, Ethanol (Mol Bio grade), Isopropanol (Mol Bio grade) and methanol (Mol Bio grade) were purchased from MP biomedicals; IPTG and Dithiothreitol (DTT) from Calbiochem; MES, BES, SDS, α-Linolenic acid (ALA) (L2376) from Sigma; EGTA, Protease inhibitor cocktail, Tris base, 40% Acrylamide, TEMED from Invitrogen. For cell culture studies, the N9 microglial cell line no. is CVCL- 0452, Roswell Park Memorial Institute (RPMI), Fetal Bovine Serum (FBS), Horse serum, Phosphate buffer saline (PBS, cell biology grade), Trypsin-EDTA, Penicillin-streptomycin, RIPA buffer were also purchased from Invitrogen. MTT reagent and TritonX-100, Trypan -Blue were purchased from Sigma. The coverslip of 12 mm and 18 mm was purchased from Bluestar for immunofluorescence and copper-coated carbon grids for TEM analysis were purchased from Ted Pella, Inc. In immunofluorescence and western blot study we used the following antibodies: Beta-actin (Thermofisher cat no. MA515739), ARP2 MONO (Thermofisher cat no- 703394), Anti-Iba-1 (Thermo cat no-PA527436), anti-mouse secondary antibody conjugated with Alexa Fluor-488 (Invitrogen, cat no A-11001), Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody with Alexa Fluor 555 (A-21428), GOXMS ALEXA FLOUR 488 goat anti rabbit (Thermofisher- cat no A28175) DAPI (Invitrogen), Goat Anti Mouse secondary antibody Peroxidase conjugated (Thermo fisher 32430), Prolong Diamond antifade (Thermofisher cat no- P36961).
Protein expression and purification
Full-length wild type Tau protein (hTau40wt) was expressed in BL21* cells with 100 µg/ml of ampicillin antibiotic selection and purified with two-step chromatography methods, cation-exchange chromatography and size-exclusion chromatography (Gorantla, MiMB, 2018). Induction was carried out with 0.5mM IPTG for 3 hrs at 37°. In brief the cell lysate was subjected to 90°C heating and supernatant was centrifugation at 40000 rpm for 45 minutes followed by dialysis overnight at 4° in 20 mM MES buffer and hTau40 purified by cation-exchange chromatography with Sepharose fast-flow column was used for chromatography. A fractions containing Tau proteins were collected after cation exchange chromatography, it was then concentrated and subjected to size-exclusion chromatography. Size-exclusion chromatography was carried out in the Superdex 75 Hi-load 16/600 column in 1X PBS supplemented with 2 mM DTT. A fractions containing Tau were collected, pooled, concentrated and the concentration of protein was determined with BCA (Bicinchoninic acid assay) assay.
Aggregation assay
Natively unfolded protein Tau undergo aggregation in presence of poly-anionic agent heparin or arachidonic acid to produce β- sheet structure [26]. Tau aggregation was induced by heparin (MW-17500 Da) in the ratio of 1:4 heparin to Tau along with other additives 20 mM BES buffer, 25 mM NaCl, 1 mM DTT, 0.01% NaN3, PIC. Aggregation propensity of Tau was checked with ThS is a homogeneous mixture of methylation product of dehydrothiotoluidine in sulfonic acid, which can bind to β-sheet structure. Aggregation kinetics of Tau was studied with 2 µM of Tau and ThS in 1:4 ratios. The excitation wavelength for ThS is 440 nm and the emission wavelength is 521 nm, further analysis of data was done using Sigmaplot 10.0.
Transmission electron microscopy
Tau fibrils and ALA vesicles were studied by transmission electron microscopy (TEM) for morphological analysis. 2 µM Tau sample was incubated on 400 mesh, carbon-coated copper grid for observation and stained with 2% uranyl acetate for the contrast. For ALA vesicles working concentration of 40 µM was taken for grid preparation. The images were taken with TECNAI T20 120 KV.
Cell culture
N9 microglia cells were grown in RPMI media supplemented with 10% heat-inactivated serum, 1% penicillin-streptomycin antibiotic solution and glutamine and grown in T25 flask or 60mm dish to maintain the culture. Cells were passaged using 0.25% trypsin-EDTA solution after washing with PBS after attaining 90% confluency. For western blot experiment cells were seeded in 6 well plate. For α-Linolenic acid preparation, previously published protocol was followed [13]. Briefly, ALA was dissolved in 100% molecular biology grade ethanol and solubilized at 50°C in the stock concentration of 20 mM. ALA solution prepared fresh before every experiment. The working concentration of ALA 40μM was decided according to previous studies and final concentration of ethanol into culture was maintained below 0.5%.
Immunofluorescence analysis
For immunofluorescence 25,000 cells of N9 microglia were seeded on 12 mm coverslip (Bluestar) in 24 well plate supplemented with 10% FBS and 1% penicillin-streptomycin. During treatment of hTau40 and ALA the cells were supplemented with 0.5% serum-deprived RPMI media. The treatment was given for 24 hours. Cells were then fixed with chilled absolute distilled methanol for 20 minutes at -20°C then washed with 1X PBS thrice. Permeabilisation before staining was carried out using 0.2% Triton X-100 for 15 minutes followed by washing three times with 1X PBS and blocking with 2% serum in 1X PBS for 1 hour at room temperature. Primary antibody treatment was given to cells overnight at 4°C in 2% serum in 1X PBS in a moist chamber. The next day, cells were washed with PBS thrice. Then incubated with secondary antibody in 2% serum at 37°C for 1 hour. Further cells were washed with 1X PBS 3 times and counterstained with DAPI (300 nM). Mounting of coverslip was done in mounting media (80% glycerol). Images were observed under a 63x oil immersion lens in Axio observer 7.0 Apotome 2.0 Zeiss microscope.
Confocal- Super-resolution microscopy analysis
To study the actin structures associated with migration, phagocytosis in presence of ALA Zeiss LSM 980 with Airy scan 2 in super-resolution mode was used. The immunofluorescence staining for the previously described conditions were carried out with β-Actin (1:500) and Iba-1 (1:500) proteins to study the microglia activation and actin structures. The super-resolution mode helped to resolved and understand the minute cell structures such as lamellipodia, filopodia, membrane ruffling and polarization state of microglia. The image processing was carried out with Zeiss ZEN 2.3 software.
Western blot
For detection of protein levels in cells (3, 00, 000 cells/well) N9 Cells were seeded in 6 well plate. The desired treatment was given for 24 hours. Treatment exposure followed by washing with 1X PBS. Cell lysis was carried out using radioimmunoprecipitation (RIPA) assay buffer containing protease inhibitors for 20 min at 4°C. The cell lysate was centrifuged at 12000 rpm for 20 minutes. Protein concentration was checked by using Bradford’s assay and equal amount of 75 µg total proteins for all the treatment groups were loaded on polyacrylamide gel electrophoresis of range 4-20% and the gel is electrophoretically transferred to polyvinylidene difluoride membrane and kept for primary antibody β-actin (1:5000), Iba-1 (1:1000) binding for overnight at 4°C. After the incubation blots washed three times with 1X PBST (0.1% Tween-20). The secondary antibody was incubated for 1 hour at RT. Then the membrane was developed using chemiluminiscence detection system. The relative quantification of protein was carried out with loading control β- Actin in each treatment group.
Statistical analysis
All the experiments have performed 3 times. The data is analyzed using SigmaPlot 10.0 and the statistical significance was calculated by student’s t-test (ns- non-significant, * indicates P≤0.05, ** indicates P≤ 0.01, *** indicates P≤0.001). Measuring the absolute intensity of protein and the corresponding area of microglia with Zeiss ZEN 2.3 software for image processing carried out the quantification of levels of intracellular proteins in immunofluorescence experiments.