This study aimed to testify whether spontaneous fluctuations in the subcortex contribute to creative divergent thinking. Individuals at high- and low levels of creativity were recruited and the resting-state fMRI data was collected. Seed-wise and dynamic functional connectivity (FC) were used to identify differences between the two groups. The topological properties of the subcortical network were measured, and their relationship with performance of creative divergent thinking was calculated using brain-behaviour correlation analyses. The results revealed higher FC between the putamen, pallidum, and thalamus in high creativity group (HCG) compared to low creativity group (LCG) within the subcortex. Whole-brain FC results showed stronger connection across subcortical (i.e., the thalamus and pallidum) and cerebral regions (i.e., the insula, middle frontal gyrus, and middle temporal gyrus) in HCG compared to LCG. In addition, the subcortical FC demonstrated a positive correlation with performance of creative thinking across the pallidum, putamen, and thalamus. Our findings may provide novel insights into the relationship between creative divergent thinking and the activities of the subcortex. It is likely that not only fronto-striatal dopaminergic pathways, but also “motor” pathways, are involved in creative thinking processing.