[1] May-Collado LJ, Kilpatrick CW, Agnarsson I. Mammals from 'down under': a multi-gene species-level phylogeny of marsupial mammals (Mammalia, Metatheria). PeerJ. 2015; doi:10.7717/peerj.805.
[2] Smith KK. Craniofacial development in marsupial mammals: developmental origins of evolutionary change. Dev Dyn. 2006;235:1181-93.
[3] Aplin KP, Archer M. Recent advances in marsupial systematics with a new syncretic classification. In: Archer M, editor. Possums and opossums: Studies in evolution. Sydney: Surrey Beatty; 1987. p. XV-LXXII.
[4] Fonseca CT, Alves JB. Dental development of Didelphis albiventris (Marsupialia): I--incisors and canines. Braz J Biol. 2006;66:53-60.
[5] Deakin JE. Marsupial genome sequences: providing insight into evolution and disease. Scientifica (Cairo). 2012; doi:10.6064/2012/543176.
[6] Pharo EA. Marsupial milk: a fluid source of nutrition and immune factors for the developing pouch young. Reprod Fertil Dev. 2019; doi:10.1071/RD18197.
[7] Sharp JA, Wanyonyi S, Modepalli V, Watt A, Kuruppath S, Hinds LA, Kumar A, Abud HE, Lefevre C, Nicholas KR. The tammar wallaby: A marsupial model to examine the timed delivery and role of bioactives in milk. Gen Comp Endocrinol. 2017; doi:10.1016/j.ygcen.2016.08.007.
[8] Guernsey MW, Chuong EB, Cornelis G, Renfree MB, Baker JC. Molecular conservation of marsupial and eutherian placentation and lactation. Elife. 2017; doi:10.7554/eLife.27450.
[9] Sauerland C, Menzies BR, Glatzle M, Seeger J, Renfree MB, Fietz SA. The Basal Radial Glia Occurs in Marsupials and Underlies the Evolution of an Expanded Neocortex in Therian Mammals. Cereb Cortex. 2018; doi:10.1093/cercor/bhw360.
[10] Ramamurthy DL, Krubitzer LA. Neural Coding of Whisker-Mediated Touch in Primary Somatosensory Cortex Is Altered Following Early Blindness. J Neurosci. 2018; doi:10.1523/JNEUROSCI.0066-18.2018.
[11] Modepalli V, Kumar A, Sharp JA, Saunders NR, Nicholas KR, Lefèvre C. Gene expression profiling of postnatal lung development in the marsupial gray short-tailed opossum (Monodelphis domestica) highlights conserved developmental pathways and specific characteristics during lung organogenesis. BMC Genomics. 2018; doi:10.1186/s12864-018-5102-2.
[12] Sánchez-Villagra MR, Forasiepi AM. On the development of the chondrocranium and the histological anatomy of the head in perinatal stages of marsupial mammals. Zoological Lett. 2017; doi:10.1186/s40851-017-0062-y.
[13] Ferner K. Skin structure in newborn marsupials with focus on cutaneous gas exchange. J Anat. 2018; doi:10.1111/joa.12843.
[14] Oliveira ÉV, Zimicz N, Goin FJ. Taxonomy, affinities, and paleobiology of the tiny metatherian mammal Minusculodelphis, from the early Eocene of South America. Naturwissenschaften. 2016; doi:10.1007/s00114-015-1331-2.
[15] Jansa SA, Barker FK, Voss RS. The early diversification history of didelphid marsupials: a window into South America's "Splendid Isolation". Evolution. 2014; doi:10.1111/evo.12290.
[16] Flores DA, Giannini N, Abdala F. Evolution of post-weaning skull ontogeny in New World opossums (Didelphidae). Organisms Diversity & Evolution. 2018; doi:10.1007/s13127-018-0369-3.
[17] Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform.; Broad Institute Whole Genome Assembly Team., Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 2007; doi:10.1038/nature05805.
[18] Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, Becq J, Bignell GR, Cheetham RK, Cheng W, Connor TR, Cox AJ, Feng ZP, Gu Y, Grocock RJ, Harris SR, Khrebtukova I, Kingsbury Z, Kowarsky M, Kreiss A, Luo S, Marshall J, McBride DJ, Murray L, Pearse AM, Raine K, Rasolonjatovo I, Shaw R, Tedder P, Tregidgo C, Vilella AJ, Wedge DC, Woods GM, Gormley N, Humphray S, Schroth G, Smith G, Hall K, Searle SM, Carter NP, Papenfuss AT, Futreal PA, Campbell PJ, Yang F, Bentley DR, Evers DJ, Stratton MR. Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell. 2012; doi:10.1016/j.cell.2011.11.065.
[19] Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ESW, Lefevre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, et al: Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol. 2011; doi:10.1186/gb-2011-12-8-r81.
[20] Hobbs M, Pavasovic A, King AG, Prentis PJ, Eldridge MD, Chen Z, Colgan DJ, Polkinghorne A, Wilkins MR, Flanagan C, Gillett A, Hanger J, Johnson RN, Timms P. A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity. BMC Genomics. 2014; doi:10.1186/1471-2164-15-786.
[21] Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K. Adaptation and conservation insights from the koala genome. Nat Genet. 2018; doi:10.1038/s41588-018-0153-5.
[22] Morris KM, Weaver HJ, O'Meally D, Desclozeaux M, Gillett A, Polkinghorne A. Transcriptome sequencing of the long-nosed bandicoot (Perameles nasuta) reveals conservation and innovation of immune genes in the marsupial order Peramelemorphia. Immunogenetics. 2018; doi:10.1007/s00251-017-1043-1.
[23] Bertassoli BM, Santos AC, Oliveira FD, Oliveira DM, Assis-Neto AC, Carvalho AF. Morfologia da laringe e traqueia de gambás (Didelphis sp.). Cienc Anim Bras. 2013; doi:10.5216/cab.v14i2.17044.
[24] Kirsch JA. The comparative serology of Marsupialia, and a classification of marsupials. Aust J Zool Suppl Ser. 1977; doi:10.1071/AJZS052.
[25] Gonçalves NJN, Mançanares CAF, Miglino MA, Samoto VY, Martins DS, Ambrosio CE, Ferraz RH, Carvalho AF. Morphological aspects of genital female of the opossum (Didelphis sp.). Braz J Vet Res Anim Sci. 2009;46:332-8.
[26] Paglia, A.P., Fonseca, G.A.B., Rylands, A.B., Herrmann, G., Aguiar, L.M.S., Chiarello AG, Leite YLR, Costa LP, Siciliano S, Kierulff MCM, Mendes SL, Tavares VC, Mittermeier RA, Patton JL. Annotated Checklist of Brazilian Mammals. Arlington: Conservation International; 2012. p. 1-76.
[27] Cáceres NC, de Moraes Weber M, Melo GL, Meloro C, Sponchiado J, Carvalho Rdos S, Bubadué Jde M. Which Factors Determine Spatial Segregation in the South American Opossums (Didelphis aurita and D. albiventris)? An Ecological Niche Modelling and Geometric Morphometrics Approach. PLoS One. 2016; doi:10.1371/journal.pone.0157723.
[28] Bezerra CM, Cavalcanti LP, Souza Rde C, Barbosa SE, Xavier SC, Jansen AM, Ramalho RD, Diotaiut L. Domestic, peridomestic and wild hosts in the transmission of Trypanosoma cruzi in the Caatinga area colonised by Triatoma brasiliensis. Mem Inst Oswaldo Cruz. 2014;109:887-98.
[29] Orozco MM, Enriquez GF, Alvarado-Otegui JA, Cardinal MV, Schijman AG, Kitron U, Gürtler RE. New sylvatic hosts of Trypanosoma cruzi and their reservoir competence in the humid Chaco of Argentina: a longitudinal study. Am J Trop Med Hyg. 2013; doi:10.4269/ajtmh.12-0519.
[30] Paiz LM, Donalisio MR, Richini-Pereira VB, Motoie G, Castagna CL, Tolezano JE. Infection by Leishmania spp. in Free-Ranging Opossums (Didelphis albiventris) in an Environmentally Protected Area Inhabited by Humans in Southeastern Brazil. Vector Borne Zoonotic Dis. 2016;16:728-30.
[31] Cáceres NC. Food habits and seed dispersal by the white-eared opossum, Didelphis albiventris, in the southern Brazil Stud Neotrop Fauna Environ. 2002; doi:10.1590/S1676-06032010000200004.
[32] Vellard J. Resistencia de los Didelphis (Zarigueya) a los venenos ofídicos; nota prévia. Rev Bras Biol. 1945;5:463-7.
[33] Vellard J. Investigaciones sobre inmunidad natural contra los venenos de serpientes. J Pub Mus Hist Nat Javier Prado. 1949;4:72-96.
[34] Farah MFL, One M, Novello JC, Toyama MH, Perales J, Moussatché H, Domont GB, Oliveira B, Marangoni S. Isolation of protein factors from opossum (Didelphis albiventris) serum, which protect against Bothrops jararaca venom. Toxicon.1996;34:1067-71.
[35] Santori RT. Discrimination of millipedes by the opossum Didelphis albiventris (Marsupialia, Didelphidae). J Adv Zool. 1998;19:118-9.
[36] Dos Santos ÍG, Jorge EC, Copola AG, Bertassoli BM, Goes AM, Silva GA. FGF2, FGF3 and FGF4 expression pattern during molars odontogenesis in Didelphis albiventris. Acta Histochem. 2017; doi:10.1016/j.acthis.2016.12.001.
[37] Santos IGD. Análise da expressão dos Fatores de Crescimento Fibroblásticos 2, 3 e 4 durante a odontogênese de molares do gambá Didelphis albiventris, um modelo promissor para estudos em Biologia do Desenvolvimento. In: Biblioteca Digital. Universidade Federal de Minas Gerais. 2014. http://www.bibliotecadigital.ufmg.br/dspace/handle/1843/BUBD-AEPPD6. Accessed 16 Jul 2017.
[38] Torres CB, Alves JB, Silva GA, Goes VS, Nakao LY, Goes AM. Role of BMP-4 during tooth development in a model with complete dentition. Arch Oral Biol. 2008; doi:10.1016/j.archoralbio.2007.07.005.
[39] Torres CB, Goes VS, Goes AM, Pacífico LG, Silva GA, Junior NL, Alves JB. Fibroblast growth factor 9: cloning and immunolocalisation during tooth development in Didelphis albiventris. Arch Oral Biol. 2006; doi:10.1016/j.archoralbio.2005.08.003.
[40] Fonseca, CT. Estudo histológico do desenvolvimento dentário do Didelphis albiventris (Lund, 1841) – Didelphidae Marsupialia [Master’s Thesis]. Belo Horizonte (MG): Universidade Federal de Minas Gerais; 1996.
[41] Gilbert SF, Bosch TC, Ledón-Rettig C. Eco-Evo-Devo: developmental symbiosis and developmental plasticity as evolutionary agents. Nat Rev Genet. 2015; doi:10.1038/nrg3982.
[42] Kilkenny C, Browne WJ, Cuthill IC, Emerson M, Altman DG. Improving bioscience research reporting: the ARRIVE guidelines for reporting animal research. PLoS Biol. 2010; doi:10.1371/journal.pbio.1000412.
[43] Patel RK, Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 2012; doi:10.1371/journal.pone.0030619.
[44] Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Trinity: reconstructing a full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol. 2011; doi:10.1038/nbt.1883.
[45] Conesa A, Götz S. Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics. 2008; doi:10.1155/2008/619832
[46] Tanabe M, Kanehisa M. Using the KEGG database resource. Curr Protoc Bioinformatics. 2012; doi:10.1002/0471250953.bi0112s38.
[47] Kanehisa M. The KEGG database. Novartis Found Symp. 2002;247:91-101.
[48] Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012; doi:10.1038/nmeth.1923.
[49] Benjamini Y, Hochberg Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol. 1995;57:289-300.
[50] Oliveros JC. Venny. An interactive tool for comparing lists with Venn's diagrams. 2007-2015. http://bioinfogp.cnb.csic.es/tools/venny/index.html. Accessed 12 March 2018.
[51] Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem. 2009;55:611-22.
[52] Pfaffl MW, Horgan GW, Dempfle L. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 2002;30:e36.
[53] Buchfink B, Xie C, Huson DH. Fast and sensitive protein alignment using DIAMOND. Nat Methods. 2015; doi:10.1038/nmeth.3176.
[54] Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman WH, Pagès F, Trajanoski Z, Galon J. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics. 2009;25:1091-3.
[55] Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003; doi:10.1101/gr.1239303.
[56] Nemeth MJ, Kirby MR, Bodine DM. Hmgb3 regulates the balance between hematopoietic stem cell self-renewal and differentiation. Proc Natl Acad Sci U S A. 2006;103:13783-8.
[57] Nemeth MJ, Curtis DJ, Kirby MR, Garrett-Beal LJ, Seidel NE, Cline AP, Bodine DM. Hmgb3: an HMG-box family member expressed in primitive hematopoietic cells that inhibits myeloid and B-cell differentiation. Blood. 2003;102:1298-306.
[58] Tang L, Zeng W, Lu X, Wang QY, Liu H, Cheng ZP, Wu YY, Hu B, Jian XR, Guo T, Wang HF, Hu Y. Identification of APOH polymorphisms as common genetic risk factors for venous thrombosis in the Chinese population. J Thromb Haemost. 2014; doi:10.1111/jth.12679.
[59] Berger JS, Rockman CB, Guyer KE, Lopez LR. Proatherogenic oxidized low-density lipoprotein/β2-glycoprotein I complexes in arterial and venous disease. J Immunol Res. 2014; doi:10.1155/2014/234316.
[60] Chui DH, Mentzer WC, Patterson M, Iarocci TA, Embury SH, Perrine SP, Mibashan RS, Higgs DR. Human embryonic zeta-globin chains in fetal and newborn blood. Blood. 1989;74:1409-14.
[61] Bloemendal H, de Jong WW. Lens proteins and their genes. Prog Nucleic Acid Res Mol Biol. 1991;41:259-81.
[62] Bloemendal H, de Jong W, Jaenicke R, Lubsen NH, Slingsby C, Tardieu A. Ageing and vision: structure, stability and function of lens crystallins. Prog Biophys Mol Biol. 2004;86:407-85.
[63] Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. A survey of best practices for RNA-seq data analysis. Genome Biol. 2016; doi:10.1186/s13059-016-0881-8.
[64] Plomin R. Commentary: Why are children in the same family so different? Non-shared environment three decades later. Int J Epidemiol. 2011; doi:10.1093/ije/dyq144.
[65] Poulsen P, Esteller M, Vaag A, Fraga MF. The epigenetic basis of twin discordance in age-related diseases. Pediatr Res. 2007;61:38R-42R.
[66] Fang Z, Cui X. Design and validation issues in RNA-seq experiments. Brief Bioinform. 2011;12:280-7.
[67] Moreton J, Izquierdo A, Emes RD. Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes. Front Genet. 2016;6:361.
[68] Krause WJ. An Atlas of Opossum Organogenesis: Opossum Development. Boca Raton: Universal Publishers; 2008.
[69] Nowack J, Giroud S, Arnold W, Ruf T. Muscle Non-shivering Thermogenesis and Its Role in the Evolution of Endothermy. Front Physiol. 2017; doi:10.3389/fphys.2017.00889.
[70] Borthwick CR, Young LJ, Old JM. The development of the immune tissues in marsupial pouch young. J Morphol. 2014; doi:10.1002/jmor.20250.
[71] Edwards MJ, Hinds LA, Deane EM, Deakin JE. A review of complementary mechanisms which protect the developing marsupial pouch young. Dev Comp Immunol. 2012; doi:10.1016/j.dci.2012.03.013.
[72] Oikonomopoulou K, Ricklin D, Ward PA, Lambris JD. Interactions between coagulation and complement—their role in inflammation. Seminars in Immunopathology. 2012;34:151-65.
[73] Ricklin D, Hajishengallis G, Yang K, Lambris JD. Complement: a key system for immune surveillance and homeostasis. Nat Immunol. 2010;11:785-97.
[74] Xue L, Galdass M, Gnanapragasam MN, Manwani D, Bieker JJ. Extrinsic and intrinsic control by EKLF (KLF1) within a specialized erythroid niche. Development. 2014;141:2245-54.
[75] Tallack MR, Magor GW, Dartigues B, Sun L, Huang S, Fittock JM, Fry SV, Glazov EA, Bailey TL, Perkins AC. Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq. Genome Res. 2012; doi:10.1101/gr.135707.111.
[76] Anthwal N, Joshi L, Tucker AS. Evolution of the mammalian middle ear and jaw: adaptations and novel structures. J Anat. 2013; doi:10.1111/j.1469-7580.2012.01526.x.
[77] Tucker AS. Major evolutionary transitions and innovations: the tympanic middle ear. Philos Trans R Soc Lond B Biol Sci. 2017;372:20150483.
[78] Frenz DA, Liu W, Cvekl A, Xie Q, Wassef L, Quadro L, Niederreither K, Maconochie M, Shanske A. Retinoid signaling in inner ear development: A "Goldilocks" phenomenon. Am J Med Genet A. 2010; doi:10.1002/ajmg.a.33670.
[79] Romand R, Dollé P, Hashino E. Retinoid signaling in inner ear development. J Neurobiol. 2006;66:687-704.
[80] Raz Y, Kelley MW. Retinoic acid signaling is necessary for the development of the organ of Corti. Dev Biol. 1999;213:180-93.
[81] Rubbini D, Robert-Moreno À, Hoijman E, Alsina B. Retinoic Acid Signaling Mediates Hair Cell Regeneration by Repressing p27kip and sox2 in Supporting Cells. J Neurosci. 2015; doi:10.1523/JNEUROSCI.1099-15.2015.
[82] Zheng JL, Shou J, Guillemot F, Kageyama R, GaoWQ. Hes1 is a negative regulator of inner ear hair cell differentiation. Development. 2000;127:4551-4560.
[83] Lu X, Borchers AG, Jolicoeur C, Rayburn H, Baker JC, Tessier-Lavigne M. PTK7/CCK-4 is a novel regulator of planar cell polarity in vertebrates. Nature. 2004;430:93-8.
[84] Montcouquiol M, Rachel RA, Lanford PJ, Copeland NG, Jenkins NA, Kelley MW. Identification of Vangl2 and Scrb1 as planar polarity genes in mammals. Nature 2003; 423:173-7. In: Lhoumeau AC, Puppo F, Prébet T, Kodjabachian L, Borg JP. PTK7: a cell polarity receptor with multiple facets. Cell Cycle. 2011;10:1233-6.
[85] Kelley MW, Driver EC, Puligilla C. Regulation of cell fate and patterning in the developing mammalian cochlea. Curr Opin Otolaryngol Head Neck Surg 2009;17:381-7.
[86] Puligilla C, Kelley MW. Building the world’s best hearing aid; regulation of cell fate in the cochlea. Curr Opin Genet Dev. 2009;19:368-73.
[87] Morishita H, Eguchi S, Kimura H, Sasaki J, Sakamaki Y, Robinson ML, Sasaki T, Mizushima N. Deletion of autophagy-related 5 (Atg5) and Pik3c3 genes in the lens causes cataract independent of programmed organelle degradation. J Biol Chem. 2013; doi:10.1074/jbc.M112.437103.
[88] Basu S, Rajakaruna S, Reyes B, Van Bockstaele E, Menko AS. Suppression of MAPK/JNK-MTORC1 signaling leads to premature loss of organelles and nuclei by autophagy during terminal differentiation of lens fiber cells. Autophagy. 2014; doi:10.4161/auto.28768.
[89] Mansoor N, Mansoor T, Ahmed M. Eye pathologies in neonates. Int J Ophthalmol. 2016; doi:10.18240/ijo.2016.12.22.
[90] Wistow G. The human crystallin gene families. Hum Genomics. 2012; doi:10.1186/1479-7364-6-26.
[91] Schwab IR. The evolution of eyes: major steps. The Keeler lecture 2017: centenary of Keeler Ltd. Eye (Lond). 2018; doi:10.1038/eye.2017.226.
[92] Jacobs GH. Losses of functional opsin genes, short-wavelength cone photopigments, and color vision--a significant trend in the evolution of mammalian vision. Vis Neurosci. 2013; doi:10.1017/S0952523812000429.
[93] Arrese CA, Hart NS, Thomas N, Beazley LD, Shand J. Trichromacy in Australian marsupials. Curr Biol. 2002;12:657-60.
[94] Kirshman LT Kolandaivelu S Frederick JM. The Leber congenital amaurosis protein, AIPL1, is needed for the viability and functioning of cone photoreceptor cells. Hum Mol Genet. 2010;19:1076-87.
[95] Blankenship AG, Hamby AM, Firl A, Vyas S, Maxeiner S, Willecke K, Feller MB. The role of neuronal connexins 36 and 45 in shaping spontaneous firing patterns in the developing retina. J Neurosci. 2011;31:9998-10008.
[96] Chhour KL, Hinds LA, Jacques NA, Deane EM. An observational study of the microbiome of the maternal pouch and saliva of the tammar wallaby, Macropus eugenii, and of the gastrointestinal tract of the pouch young. Microbiology. 2010; doi:10.1099/mic.0.031997-0.
[97] Kwek J, De Iongh R, Nicholas K, Familari M. Molecular insights into evolution of the vertebrate gut: focus on stomach and parietal cells in the marsupial, Macropus eugenii. J Exp Zool B Mol Dev Evol. 2009; doi:10.1002/jez.b.21227.
[98] Menzies BR, Shaw G, Fletcher TP, Renfree MB. Early onset of ghrelin production in a marsupial. Mol Cell Endocrinol. 2009; doi:10.1016/j.mce.2008.10.033.
[99] Sharp JA, Modepalli V, Enjapoori AK, Bisana S, Abud HE, Lefevre C, Nicholas KR. Bioactive Functions of Milk Proteins: a Comparative Genomics Approach. J Mammary Gland Biol Neoplasia. 2014; doi:10.1007/s10911-015-9331-6.
[100] Kwek JH, Iongh RD, Digby MR, Renfree MB, Nicholas KR, Familari M. Cross-fostering of the tammar wallaby (Macropus eugenii) pouch young accelerates fore-stomach maturation. Mech Dev. 2009; doi:10.1016/j.mod.2009.01.003.
[101] Schanbacher FL, Talhouk RS, Murray FA, Gherman LI, Willett LB. Milk-borne bioactive peptides. Int Dairy J. 1998;8:393-403.
[102] Gawenis LR, Greeb JM, Prasad V, Grisham C, Sanford LP, Doetschman T, Andringa A, Miller ML, Shull GE. Impaired gastric acid secretion in mice with a targeted disruption of the NHE4 Na+/H+ exchanger. J Biol Chem. 2005;280:12781-9.
[103] Yue YG, Chen YQ, Zhang Y, Wang H, Qian YW, Arnold JS, Calley JN, Li SD, Perry WL 3rd, Zhang HY, Konrad RJ, Cao G. The acyl coenzymeA:monoacylglycerol acyltransferase 3 (MGAT3) gene is a pseudogene in mice but encodes a functional enzyme in rats. Lipids. 2011; doi:10.1007/s11745-011-3537-1.
[104] Cheng D, Nelson TC, Chen J, Walker SG, Wardwell-Swanson J, Meegalla R, Taub R, Billheimer JT, Ramaker M, Feder JN. Identification of acyl coenzyme A:monoacylglycerol acyltransferase 3, an intestinal specific enzyme implicated in dietary fat absorption. J Biol Chem. 2003;278:13611-4.
[105] Lefevre JG, Short KM, Lamberton TO, Michos O, Graf D, Smyth IM, Hamilton NA. Branching morphogenesis in the developing kidney is governed by rules that pattern the ureteric tree. Development. 2017; doi:10.1242/dev.153874.
[106] Brophy P. The developing kidney: issues and opportunities. Semin Fetal Neonatal Med. 2017; doi:10.1016/j.siny.2017.01.003.
[107] McMahon AP. Development of the Mammalian Kidney. Curr Top Dev Biol. 2016; doi:10.1016/bs.ctdb.2015.10.010.
[108] Oxburgh L, Carroll TJ, Cleaver O, Gossett DR, Hoshizaki DK, Hubbell JA, Humphreys BD, Jain S, Jensen J, Kaplan DL, Kesselman C, Ketchum CJ, Little MH, McMahon AP, Shankland SJ, Spence JR, Valerius MT, Wertheim JA, Wessely O, Zheng Y, Drummond IA. (Re)Building a Kidney. J Am Soc Nephrol. 2017; doi:10.1681/ASN.2016101077.
[109] Reggiani L, Raciti D, Airik R, Kispert A, Brändli AW. The prepattern transcription factor Irx3 directs nephron segment identity. Genes Dev. 2007;21:2358-70.
[110] Alarcón P, Rodríguez-Seguel E, Fernández-González A, Rubio R, Gómez-Skarmeta JL. A dual requirement for Iroquois genes during Xenopus kidney development. Development. 2008; doi:10.1242/dev.023697.
[111] Heliot C, Desgrange A, Buisson I, Prunskaite-Hyyryläinen R, Shan J, Vainio S, Umbhauer M, Cereghini S. HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and Irx1/2. Development. 2013; doi:10.1242/dev.086538.
[112] Darlington RB, Dunlop SA, Finlay BL. Neural development in metatherian and eutherian mammals: variation and constraint. J Comp Neurol. 1999;411:359-68.
[113] Paolino A, Fenlon LR, Kozulin P, Richards LJ, Suárez R. Multiple events of gene manipulation via in pouch electroporation in a marsupial model of mammalian forebrain development. J Neurosci Methods. 2018; doi:10.1016/j.jneumeth.2017.09.004.
[114] Liu Y, Helms AW, Johnson JE. Distinct activities of Msx1 and Msx3 in dorsal neural tube development. Development. 2004;131:1017-28.
[115] Bach A, Lallemand Y, Nicola MA, Ramos C, Mathis L, Maufras M, Robert B. Msx1 is required for dorsal diencephalon patterning. Development. 2003;130:4025-36.
[116] Meyer RC, Giddens MM, Schaefer SA, Hall RA. GPR37 and GPR37L1 are receptors for the neuroprotective and glioprotective factors prosaptide and prosaposin. Proc Natl Acad Sci U S A. 2013;110:9529-34.
[117] Smith NJ. Drug Discovery Opportunities at the Endothelin B Receptor-Related Orphan G Protein-Coupled Receptors, GPR37 and GPR37L1. Front Pharmacol. 2015; doi:10.3389/fphar.2015.00275.
[118] Kelly EM, Marcot JD, Selwood L, Sears KE. The development of integration in marsupial and placental limbs. Integrative Organismal Biology. 2019; doi:10.1093/iob/oby013.
[119] Kosaka N, Sakamoto H, Terada M, Ochiya T. Pleiotropic function of FGF-4: its role in development and stem cells. Dev Dyn. 2009;238:265-76.
[120] Suzuki HR, Sakamoto H, Yoshida T, Sugimura T, Terada M, Solursh M. Localization of HstI transcripts to the apical ectodermal ridge in the mouse embryo. Dev Biol. 1992;150:219-22.
[121] Niswander L, Martin GR. FGF-4 and BMP-2 have opposite effects on limb growth. Nature. 1993;361:68-71.
[122] Bensoussan-Trigano V, Lallemand Y, Saint Cloment C, Robert B. Msx1 and Msx2 in limb mesenchyme modulate digit number and identity. Dev Dyn. 2011;240:1190-202.