Tissue samples
Samples from twenty-two ICC cases that had been pathologically diagnosed at Yamagata University Hospital and Yonezawa Municipal Hospital from 2003 to 2018 were used. The diagnosis of ICC was made based on the WHO classification(20). One case of breast cancer and colon cancer was used as positive controls for the CSC markers CD44v9 and EpCAM (breast cancer) and Sox9 (colon cancer) in immunohistochemistry and reverse transcription-polymerase chain reaction (RT-PCR)(21–23). One tonsillar tissue with chronic tonsillitis was used as a positive control for DC markers in immunohistochemistry. All the excised tissues were fixed with 10% buffered neutral formalin at room temperature for 12 to 48 hrs and embedded in paraffin. This study was approved by the Yamagata University School of Medicine Ethics Committee (H29-302).
Immunohistochemistry
Three µm-thick tissue sections were prepared from paraffin-embedded blocks. Immunohistochemistry was performed as previously described(24). In brief, after deparaffinization, the endogenous peroxidase activity was stopped by immersion in methanol containing 0.3% H2O2 at 4 °C for 30 min. For antigen retrieval, an autoclave method (2 atm, 121 °C, 20 min) using citrate buffer (pH 6.0; LSI Medience, Tokyo, Japan), antigen activation solution (pH 9.0; Nichirei Bioscience, Tokyo, Japan), or proteinase K (Agilent Technologies, Tokyo, Japan) was used. After washing with 0.01 M phosphate-buffered saline, pH 7.4, the primary antibodies were incubated with the samples in a humid box at room temperature for 1 hr. Primary antibodies against CD1a (MTB1, mouse IgG1; Leica Biosystems, Nussloch, Germany), DC-SIGN (CD209) (polyclonal rabbit IgG; Santa Cruz Biotechnology, Dallas, TX), DEC205 (CD205) (LY, mouse IgG; Abcam plc, Cambridge, UK), DC-LAMP (CD208) (104.G4, mouse IgG1; Beckman Coulter, Brea, CA), CD123 (BR4MS, mouse IgG2b; Leica Biosystems), CD44v9 (RV3, rat IgG2a; Cosmo Bio, Tokyo, Japan), EpCAM (VU-1D9, mouse IgG1κ; Abcam plc), and Sox9 (polyclonal rabbit; Chemicon, Tokyo, Japan) were used. A biotin-labelled anti-mouse IgG or anti-rabbit IgG antibody (Nichirei Biosciences) was used as the secondary antibody and was followed by streptavidin/AP (Agilent Technologies), an anti-mouse EnVision antibody (Agilent Technologies), or an anti-rabbit EnVision antibody (Agilent Technologies). Instead of a primary antibody, 0.01 M phosphate-buffered saline, pH 7.4, Universal Negative Control-Mouse (N1698; Agilent Technologies), and Universal Negative Control-Rabbit (N1699; Agilent Technologies) were used as negative controls.
First, the number of positive cells for five different DC markers within tumour nests of ICC were counted. Ten tumour nests infiltrated by the higher number of DCs positive for each DC marker, such as CD1a, DC-SIGN, DEC205, DC-LAMP, and CD123, were photographed under a high-power field (HPF, 400x in magnification). The number of DCs infiltrating tumour nests was counted on the picture screen, and the ratio of tumour nests simultaneously occupying the screen was defined as the tumour nest occupancy rate (Supplemental Fig. 1a & 1b). Finally, “the corrected DC number” was calculated as “the number of DCs within the tumour nest per HPF”/“tumour nest occupancy”.
Second, the percentage of CSC marker-positive tumour cells per total of tumour cells in a section was scored as follows: score 0, 0%; score 1+, 1–25%; score 2+, 26–50%; and score 3+, > 50%. Furthermore, cases positive for CD44v9 were divided into CD44v9+ group for scores 1 + to 3 + and CD44v9− group for score 0, those positive for EpCAM were divided into EpCAMhigh group for score 3 + and EpCAMlow group for scores 0 to 2+, and those positive for Sox9 were divided into the Sox9high group for score 3 + and Sox9low group for scores 0 to 2+.
Third, the number of each of the five types of DCs (CD1a, DC-SIGN, DEC205, DC-LAMP, and CD123) infiltrating the tumour nests of each of the CD44v9+ and CD44v9−, EpCAMhigh and EpCAMlow, and Sox9high and Sox9low groups was compared as follows. Serial sections were prepared from formalin-fixed and paraffin-embedded tissues, and a pair of sections among them were immunostained for the DC marker and the CSC marker. Tumour nests immunopositive for the CSC marker in one section were encircled by lines on the HPF photographs, and the same nests immunostained for the DC marker in another section were encircled by lines on HPF photographs. The numbers of DC marker-positive cells in the encircled tumour nests were counted, and the same method was used to calculate “the corrected DC number” (CD44v9+ group) (Supplemental Fig. 1c & d). Haematoxylin and eosin staining of a serial section assisted in the calculation of “the corrected DC number” within the CSC marker-negative tumour nests (CD44v9− group). Similarly, in the cases of EpCAM and Sox9 immunostaining, both tumour nests exhibiting a score 3+ (EpCAMhigh and Sox9high groups) and scores 0 to 2+ (EpCAMlow and Sox9low groups) were independently marked, and “the corrected DC number” within each tumour nest was calculated. One to 10 tumour nests infiltrated by a high number of DCs positive for each DC marker were evaluated. These counts and calculations were performed independently by two pathologists (U.A. and K.T.).
Finally, the correlation between the frequency of the expression of CSC markers on ICC tumour cells and PFS and OS was evaluated. That is, the PFS and OS were compared between the CD44v9+ and CD44v9− groups, the EpCAMhigh and EpCAMlow groups, and the Sox9high and Sox9low groups by the Kaplan-Meier method (log-rank test).
Reverse transcription-polymerase chain reaction (RT-PCR)
RT-PCR was performed using 4 cases with ICC and one case with breast cancer and colon cancer as positive controls, respectively, as previously described(25). mRNA was extracted and purified from paraffin-embedded tissues using WaxFree RNA (TrimGen, Sparks, MD). The following primer sequences were designed: 5'-GGCTTGGAAGAAGATAAAGACC-3' and 5'-TGCTTGATGTCAGAGTAGAAGTTG-3' for human CD44v9 (52 bp), 5'-GCTGGCCGTAAACTGCTTTG-3' and 5'-ACATTTGGCAGCCAGCTTTG-3' for human EpCAM (100 bp), 5'-GCTCTGGAGACTTCTGAACGA-3' and 5'-CCGTTCTTCACCGACTTCCT-3' for human Sox9 (132 bp), and 5'-GCACCGTCAAGGCTGAGAAC-3' and 5'-TGGTGAAGACGCCAGTGGA-3' for human glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 138 bp) as internal controls. For EpCAM and Sox9, primers designed by PrimerBlast were used. As a negative control, a blank control during mRNA extraction and cDNA synthesis was used.
Statistical analysis
Statistical analyses were performed with JMP version 14 (SAS Institute, Tokyo, Japan) and Microsoft Excel 2013 (Microsoft, Redmond, WA). The Mann-Whitney U test was performed for comparison between the two groups. The Kaplan-Meier method (log-rank test) was used to compare PFS and OS. PFS was from the date of surgery to the date of recurrence on the image or the last observation date, and OS was the date of surgery to the date of death or last observation. Univariate or multivariate analysis was performed on the effect of clinicopathological factors on survival using the Cox proportional hazards model. In all tests, P < 0.05 was determined to be significant.