Animals
C57B1/6N ParkinQ311X mice,expressing the human parkin variant parkinQ311X [15] selectively in DA neurons, were previously generated and characterized [16](The Jackson Laboratories, Bar Harbor, ME, USA). This mouse model has normal wild-type parkin alleles on both chromosomes in addition to the exogenous human parkinQ311X variant, which is ectopically expressed from a bacterial artificial chromosome and driven by the dopamine transporter (DAT) promoter. The phenotype of this mouse is due to a dominantly inherited toxic gain of function, as previously reported[16]. Gender-matched littermates were used as controls in the experiments. All experiments were conducted with the aim of minimizing the number of sacrificed animals.Mice were maintained and bred at the animal house of Ospedale San Raffaele in compliance with institutional guidelines and international laws (EU Directive 2010/63/EU EEC Council Directive 86/609, OJL 358, 1, December 12, 1987, NIH Guide for the Care and Use of Laboratory Animals, U.S. National Research Council, 1996).
Dissection of substantia nigra
The mice were anesthetized and sacrificed. The brains were removed, placed in ice-cold phosphate buffer saline 1X (PBS) for 2–3 min, then transferred to the platform of a tissue chopper (McIlwain™ Tissue Chopper). The tissue was positioned perpendicular to the chopper blade and 300-μm thick coronal slices were cut in less than 1 minute. The brain slices were immediately transferred to PBS 1X. Substantia nigra was isolated under a dissecting microscope and immediately frozen in liquid nitrogen.
Western blotting
Western blotting was performed with 4-12% NovexNuPAGE SDS–PAGE gels (Life Technologies) according to the manufacturer’s protocol. Brain tissues were homogenized with lysis buffer (50 mMTris, pH 7.5, 150 mMNaCl, 1 mM EDTA, 1% NP40, protease inhibitors, 0.5% sodium deoxycholate, 0.1% SDS, complete mini protease inhibitors cocktail tablet (Roche)). The following antibodies were used: anti-GluR6/7 (Origine cod. TA310550 1:1000), anti-GluA1 (Cell Signalling cod. 13185-D4N9V 1:2000), anti-GluA2 (NeuroMab clone L21/32 1:1000), anti-KA2 (Millipore cod. 06-315 1:2000), anti-Fodrin (Cell Signalling cod. 2122 1:1000), anti-PARP (Cell Signalling cod.9542 1:1000), anti-TH (Millipore cod. MAB310 clone LNC1 1:1000), anti-GAPDH (Santa Cruz cod. sc-25778 1:1000), anti-Tubulin β3 (Covance cod. MMS-435P: 1:10.000).
Immunohistochemistry and stereological cell count in SNc
The micewere deeply anesthetized and transcardially perfused with 0.9% NaCl solution, followed by 4% paraformaldehyde in PBS (0.1 M, pH 7.4, Sigma-Aldrich, St. Louis, MO, USA). The brains were transferred to a 30% sucrose solution in PBS for cryoprotection and stored at −80°C.For GluK2 labelling, the tissues were cut to30 µm thickness, transferred to glass slides coated with polylysine, and dried at room temperature. For tyrosine hydrolase (TH) labelling, the slices were cut to 50 µm thickness, rehydrated, washed, and incubated in sodium citrate buffer (pH 6) at 80°C for 30 min, then kept for 20 min on ice. The slices were then treated with blocking solution, 5%normal goat serum (NGS, Sigma-Aldrich) +0.1% triton in PBS, and incubated for 48 h with 1:250 anti-GluR6/7 (04-921, Millipore, Burlington, MA, USA) and 1:500 anti-TH (Mab318, Millipore). After three washes with PBS, the tissues were incubated for 2 h at room temperature with secondary antibodies (1:300 goat anti-rabbit IgG Alexa 488 to reveal GluK2 and 1:300 goat anti-mouse IgG Alexa 546 to reveal TH). Images were acquired with a Leica TCS SP2 (Leica, Wetzlar, Germany)and analysed using ImageJ software [17].
Stereological cell count in SNc
Stereological counting was performed according to published methods [18].Fifty-micrometer thick free-floating sections of SNc (AP from −3.16 to −3.52 from bregma[19]) were rinsed in PBS, incubated for 30 min at room temperature with blocking solution (PBS + BSA 1:50 + Triton X100 0.3%), and then incubated overnight at 4°C with TH antibody (ab112; 1:750 in BSA 1% PBST; Abcam, Cambridge, UK). The sections were then rinsed and incubated with a secondary antibody (ab6721, 1:500 in BSA 1% PBST; Abcam) and revealed by a DAB substrate kit (ab64238, Abcam). The sections were mounted on gelatinized slides, dehydrated, and overlaid by coverslips. Stereological analysis was performed by counting TH+ neurons (phenotypic marker) and cresyl violet stained cells (structural marker) in the SNc, according to an unbiased stereological sampling method based on optical fractionator stereological probe [18,20]. A Leica DM6000B motorized microscope coupled with Mercator Pro software (Mercator Digital Imaging System, Explora Nova, La Rochelle, France) was used. Counting was performed on at least 5 consecutive slices (magnified at 40X).
Analyses HPLC-MRM analysis of UBP310 concentration in brain tissuesand in plasma
Mice were injected i.p. with UBP310 (20 mg/Kg) or with an equivalent volume of vehicle. After 10-30-60-120-240-480-1440 min, animals were sacrificed, plasma and brain samples were collected and stored at -80°C until the analysis. Brain samples (100 mg) were homogenized in 1 mL of methanol/water 85:15 (v/v), containing 10 ng of TRP-D5. Samples were then placed for 20 min at -80 °C, in order to allow the separation of fat materials. Homogenates were centrifuged for 15 min at 13200 rpm at 4 °C and 500 μL of the supernatants were dried under nitrogen and re-suspended in 100 μL of chromatographic mobile phase for instrumental analysis.
The analyses of UBP310 were performed using a 1200 Series HPLC system (Agilent Technologies, Santa Clara, CA, USA) interfaced to an API 5500 triple quadrupole mass spectrometer (Sciex, Thornhill, Ontario, Canada). The mass spectrometer was equipped with an electrospray ionization (ESI) source and was operated in positive ion and multiple reaction monitoring (MRM) mode to measure the product ions formed in the collision cell from the molecular ions of the analytes. In a preliminary phase, standard solutions of UBP310 and tryptophan-D5 (TRP-D5), used as internal standard, were directly injected into the UBP spectrometer, to identify the best ion transitions for MRM acquisition. The identified transitions were: m/z 354.1 –> 197.1 (quantification transition) and m/z 354.1 –> 308.1 (qualification transition) for UBP310; m/z 210.3 –> 150.1 (quantification transition) and m/z 210.3 -> 122.1 (qualification transition) for TRP.-D5 The ion source settings were as follows: ion spray voltage, 5500 V; curtain gas, 28; collision gas, 7; source temperature, 320 °C; ion source gas 1 and gas 2, 50 and 40 psi, respectively. The HPLC separation of UBP310 and TRP-D5 was obtained with an AscentisExpress C18 column (150 × 2.1 mm; 2.7 μm particle size, Sigma Aldrich, St. Louis, MO), using an elution mixture composed of solvent A (0.05 % acetic acid in water) and solvent B (acetonitrile) at 30 °C. The elution gradient was from 1 to 99% of solvent B in 12 minutes; hold at 99% for 2 minutes and re-equilibration for 5 min at 10% of solvent B. The injection volume was 5μl and the flow rate was 180 μl/min.
Chronic treatment with UBP310 or vehicle
UBP310 (3-({3-[(2S)-2-Amino-2-carboxyethyl]-5-methyl-2,6-dioxo-3,6-dihydro-1(2H)-pyrimidinyl}methyl)-2-thiophenecarboxylic acid ) was purchased from ABCAM (Cambridge, UK), dissolved in 100% DMSO at a concentration of 10 mg/mL and then diluted in 90% saline + 10% DMSO at 1 mg/mL. The mice were injected i.p. with UBP310 (20 mg/kg) or an equivalent volume of vehicle (90% saline + 10% DMSO) every day at the same hour (8-10 am) for the duration of the treatment.
Cell-attached and whole-cell patch clamp recordings of DA neurons of the SNc in mouse brain slices.
Twenty-five-day-old mice were anesthetized by intraperitoneal injection of a mixture of ketamine/xylazine (100 mg/kg and 10 mg/kg, respectively; Sigma-Aldrich) and perfused transcardially with ice-cold artificial cerebrospinal fluid (ACSF)containing (in mM): 125 NaCl, 3.5 KCl, 1.25 NaH2PO4, 2 CaCl2, 25 NaHCO3, 1 MgCl2, and 11 D-glucose, saturated with 95% O2 and 5% CO2 (pH 7.3). After decapitation, the brains were removed and 300 µm-thick coronal slices containing the SN were cut in ACSF at 4°C on a VT1000S vibratome (Leica Microsystems, Wetzlar, Germany). Individual slices were submerged in a recording chamber mounted on the stage of an upright BX51WI microscope (Olympus, Japan) equipped with differential interference contrast optics (DIC). The slices were continuously perfused with ACSF at a rate of 2-3 ml/min at 32°C. DA neurons were recorded using glass pipettes filled with a solution containing the following (in mM): 10 NaCl, 124 KH2PO4, 10 HEPES, 0.5 EGTA, 2 MgCl2, 2 Na2-ATP, 0.02 Na-GTP, (pH 7.2, adjusted with KOH; tip resistance: 4-6 MΩ). Cells were recordedin cell-attached configurationfor spontaneous firing frequencies and whole-cell configuration for intrinsic membrane parameters. All recordings were performed using a MultiClamp 700B amplifier interfaced with a computer through a Digidata 1440A (Molecular Devices, Sunnyvale, CA, USA). Traces were sampled at a frequency of 10 kHz and low-pass filtered at 2 kHz. Data were acquired using pClamp10 software (Molecular Devices) and analyzed with Clampfit and GraphPad Prism (La Jolla, CA).
Data presentation and statistical analysis
Data are presented as mean±standard error of the mean (SEM). The normality test (Kolmogorov–Smirnov test) and equal variance test (Bartlett’s test)were applied. Two-tailed unpaired Student’s t-test was used to compare two groups of data. One-way ANOVA followed by appropriate post hoc tests was used to compare more than two groups. The Friedman repeated-measure ANOVA on rankswas usedon non-normally distributed datasets to analyze the effect of UBP310 on firing frequency.