Cell lines, and reagents.
The larynx carcinoma cell line TU212 cells were obtained fromGuangzhou Juyan Biological Technology (Guangzhou, Chin) and cultured in RPMI 1640 medium (Gibco; Grand Island, NY) with 10% fetal bovine serum (FBS; Hyclone, Logan, UT), 100 U penicillin and 100 mg/ml streptomycin (Gibco), hereafter referred to as standard media. The cells were kept at 37°C in a humidified atmosphere containing 5% CO2.
Tumor samples
In total, 30 patients diagnosed with LSCC at the Ganzhou Tumor Hospital between 2014 and 2016 were enrolled in this study. Patients were an average of 63.6 years old (range: 28-79), and all patients underwent surgical treatment in our department. In addition, 15 normal paracancerous tissue segments (>1 cm from surgical margins) were collected to serve as control samples. Median patient follow-up was 27.1 months (Range: 2-85.6). Clinicopathological features of them are described in table 1. All patients provided written informed consent, and the Ethical Committee of Ganzhou Cancer Hospital approved this study(No.2017008).The association between gene expression and patient survival was assessed using Kaplan-Meier curves constructed in GraphPad Prism 8.0.
GEO data analysis
GSE51985 and GSE59102 were obtained from the NCBI Gene Expression Omnibus (GEO) database (https://www.ncbi.nlm.nih.gov/gds). The download data format is MINIML,and the box plot is implemented by the R software package ggplot2. All data were downloaded from the public databases hence it was not required to obtain additional ethical approval for our study.
Table 1 Relationships Between YBX1 Expression in larygeal Tumor Tissues and Patients’ Clinicopathological Features (n=30)
Parameter
|
Case
|
YBX1 expression
|
Chi-squares Value
|
P value
|
High
|
Low
|
Male
|
24
|
13
|
11
|
0.208
|
0.648
|
Female
|
6
|
2
|
4
|
Age(Years)
|
|
|
|
|
|
≥60
|
21
|
11
|
10
|
0.000
|
1.000
|
<60
|
9
|
4
|
5
|
Primary site
|
|
|
|
|
|
Glottic
|
18
|
11
|
7
|
1.250
|
0.264
|
Supraglottic
|
12
|
4
|
8
|
T stage
|
|
|
|
|
|
T1-2
|
14
|
1
|
13
|
16.205
|
0.000
|
T3-4
|
16
|
14
|
2
|
Cervical metastasis status
|
|
|
|
|
|
N-
|
17
|
5
|
12
|
4.887
|
0.0271
|
N+
|
13
|
10
|
3
|
Cell culture and transfection
Human Tu212 LSCC cells were obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China) and were grown in DMEM (L110, Shanghai BasalMedia Technologies Co., LTD) containing 10% FBS and penicillin/streptomycin (15070063, Thermo, USA) in a 5% CO2 incubator at 37°C. Transfections were conducted by plating 5×104 cells/well of 6-well plates and allowing them to grow until 60-70% confluent, at which time miR-382-5p (10, 50, or 100 nmol/L) was transfected into cells with Lipofectamine RNAiMAX (GenePharma, Shanghai, China), or plasmid DNA or siRNA duplexes (GenePharma) were transfected into cells using Lipofectamine 2000.
YBX1-homo-658 sense: 5-GGAGUUUGAUGUUGUUGAATT-3;
antisense:5-UUCAACAACAUCAAACUCCTT-3
YBX1-homo-906 sense: 5-GGUUCCCACCUUACUACAUTT-3;
antisense:5-AUGUAGUAAGGUGGGAACCTT-3
YBX1-homo-1007 sense: 5-GCAGGAGAACAAGGUAGACTT-3;
antisense:5-GUCUACCUUGUUCUCCUGCTT-3;
Negative siRNA(NC) sense: 5-UUCUCCGAACGUGUCACGUTT-3;
antisense: 5-ACGUGACACGUUCGGAGAATT-3
Migration and invasion assays
For Transwell assays, 8 μm inserts (BD Biosciences) that were or were not coated with 1 mg/mL Matrigel (Invitrogen) were seeded with 1×104 or 2×104 appropriate cells for invasion and migration assays, respectively. The lower chamber was then filled with DMEM containing 10% FBS, and cells were incubated for 24-48 h after which invasive/migratory cells were fixed, stained with crystal violet, and counted under 200× magnification.
Cell viability assay
Cells were transfected with miR-382-5p mimics, YBX1 overexpression plasmids, or YBX1-specific siRNA, after which a CCK8 kit (Beyotime, WI, USA) was used based on provided instructions to assess cell viability. Viability was assessed at 0, 24, 48, 72, and 96 h by assessing absorbance (OD) at 450 nm using a plate reader, with survival being calculated as follows: survival rate=(ODexperimental–ODblank)/(ODcontrol– ODblank).
Identification of YBX1-specific miRNAs
To identify miRNAs that were predicted to bind to the YBX1 3’-UTR, we utilized four predictive tools including mirtarbase[15], starbase[16], miRwalk[17] and TargetScan[18].
Luciferase reporter assay
A Dual-Luciferase reporter assay was conducted based upon provided instructions (Promega, WI, USA). Briefly, HEK-293T cells were transduced with a lentivirus encoding miR-382-5p or a control construct and were then plated in 96-well plates until 70% confluent. After an additional 12 h, cells were co-transfected with 50 ng of pMIR-YBX1-3'UTR-wt or pMIR-YBX1-3'UTR-mut and 10ng of pMIR-GLO (Gene Pharma). After a further 24 h incubation, the Dual-Luciferase Reporter Assay System was used to quantify firefly and Renilla luciferase activity.
qRT-PCR
TRIzol (Invitrogen, USA) was used to extract cellular RNA, after which a PrimeScript RT reagent kit (TaKaRa, Japan) was utilized to prepare cDNA, while a PrimeScript miRNA cDNA Synthesis Kit (TaKaRa) was instead used for miRNA analyses. SYBR Premix Ex Taq I was then used for qPCR analyses, and all primers used in this study are compiled in table 2. β-actin and U6 served as normalization controls for mRNA and miRNA analyses, respectively, with the 2-ΔΔCt approach being used to normalize gene expression.
Table 2 Sequences used for qRT-PCR
miR-382-5p
|
F: ATCCGTGAAGTTGTTCGTGG
|
R:TATGGTTGTAGAGGACTCCTTGAC
|
U6
|
F: CTCGCTTCGCRCAGCACA
|
R: AACGCTTCACGAATTTGCGT
|
YBX-1
|
F: GGTGGGTGTGTTGAAGAGAGAAGG
|
R: TCTAGGCTGTCTTTGGCGAGGAG
|
K-Ras
|
F: CATCTGCCTCCGAGTTCCTGAATG
|
R: CACCATCTCTACCTCCACCTCCTC
|
MEK
|
F:CTTCCGTGGGTGTCGTGAATGG
|
R:TTCGCAGCAGATATAGGCAGGTTG
|
p-MEK
|
F: GCTCTTGTCTGGGAGCCAAC
|
R: GCACTTCCTCCCACTTCTGC
|
ERK
|
F: TCTCCTCTGTGTTGTCCTCCTTCC
|
R: GGCTGCCGCTCGACTTATGC
|
p-ERK
|
F: TCGCTCTGTCTCCAGGCTGAAG
|
R: CGGGAAGCTGAGGAAGAAGAATCG
|
β-actin
|
F: CCTGTACGCCAACACAGTGC
|
R: ATACTCCTGCTTGCTGATCC
|
Western blotting
Protein was extracted using RIPA lysis buffer, after which 50–100μg of protein per sample was separated via SDS-PAGE and transferred onto PVDF membranes (Roche, IN, USA). Membranes were then blocked using 5% non-fat milk and incubated with appropriate primary antibodies: mouse anti-human YBX1 (1:1000, Abcam); rat anti-human k-RAS (1:3000, Abcam); mouse anti-human p-MEK (1:2000, Santa Cruz); mouse anti-human p-ERK (1:1000, Santa Cruz); mouse anti-human MEK (1:3000, Santa Cruz); mouse anti-human ERK (1:1500, Santa Cruz); mouse anti-human actin (1:3000, Sigma Aldrich). Enhanced chemiluminescence reagents (Thermo Scientific, MA, USA) were then used to detect protein bands on prepared blots.
Immunohistochemistry (IHC)
Paraffin-embedded tissue sections were deparaffinized using xylene, after which they were rehydrated with an ethanol gradient. Endogenous peroxidase activity was then blocked using 3% H2O2, after which samples were heated in a microwave to facilitate antigen retrieval. Next, 5% BSA was used to block nonspecific antigen binding for 1 hour at 37°C, after which sections were incubated with primary anti-YBX1 (1:250, Abcam, USA) overnight at 4°C. Sections were then incubated for 1 h with secondary antibodies at 37°C, after which diaminobenzidine was used to detect antibody binding and sections were counterstained using hematoxylin. An Olympus light microscope was then used to capture representative images of tissue sections.
Wound healing assay
Wound healing assays were conducted to evaluate cellular migration. Briefly, cells were plated until 80-85% confluent, at which time a sterile micropipette tip was used to scratch the monolayer. PBS was then used to wash away damaged cells, after which DMEM containing 10% FBS was added and cells were incubated for 24 h. The wound site was then imaged via phase-contrast microscope (Zeiss, Gottingen, Germany), with Image-Pro Plus v4.5.1 being used to quantify wound closure.
Tumor xenograft model
Tu212 cells that had been transfected with mir-382-5p with or without YBX1 overexpression were subcutaneously injected into the flank of 4-6 week-old female BALB/c nude mice (1×107 cells in 200 μl PBS). Following a 28-day experimental period, tumor length and width (L and W, respectively) and weight values were assessed, and tumor volumes were calculated using the formula: volume = ½LW2. The Ganzhou Cancer Hospital Committee approved all animal studies.
Statistical analysis
Data are means±S.D. from three independent experiments, and were analyzed using SPSS v22.0 (IBM, USA). Data were compared using Student’s t-tests, with Kaplan-Meier curves being used for survival analyses. P<0.05 was the significance threshold.