3.5.1 Microbial community diversity
The α-diversity index of samples reflects the abundance, uniformity, and diversity of microbial communities. Table 1 shows the operational taxonomic units (OTUs) and Chao 1, Shannon, and Simpson indices of each sample. The present study achieved a > 98% coverage of all 7 samples, indicating that the present study comprehensively characterized the microbial community of environmental samples. Abundance of the microbial community is reflected by the OTUs and Chao 1 index. The background point (D1) and point D2 showed the highest and lowest numbers of OTUs at 509 and 125, respectively. The neutral D1 and D4 samples showed the highest Chao 1 index values of 510.5000 and 472.4839, respectively, whereas D2 under the lowest pH had the lowest Chao 1 index of 158.4615. The Chao 1 index values of the remaining samples were low, at an average of 348.1074. The Simpson and Shannon index values of the samples reflected the diversity of the microbial community and were highest for neutral samples at D1 and D4 at 5.15 and 0.98, respectively; those of samples affected by lower pH (D2, D3, D5, D6, D7) were at an average of 2.47 and 0.60, respectively. These results indicated that microbial community abundance and diversity decreased with decreasing pH. The present study conducted Principal Co-ordinates Analysis (PCoA) to further analyze differences between samples and the possible driving factors (Fig. 10). Principal coordinates 1 and 2 (PCo1 and PCo2) explained the most observed variation in the seven samples of 47% and 25%, respectively. In the PCoA plot, D2 (pH < 2.2) was in the second quadrant; the remaining mine water gushing points and AMD pollution points (2.2 < pH < 4) were gathered at the junction of the first and fourth quadrants; points D1 and D4 (neutral pH) were gathered in the third quadrant. These results showed significant differences in microbial community among samples under different pH conditions.
Table 1
The α diversity index of the microbial community in the study area
Sample | OTUs | Chao 1 | Shannon | Simpson | Coverage |
D1 | 509 | 510.5000 | 5.016988 | 0.972192 | 0.998961 |
D2 | 125 | 158.4615 | 2.857449 | 0.569117 | 0.995548 |
D3 | 300 | 343.9091 | 2.313590 | 0.584752 | 0.989611 |
D4 | 462 | 472.4839 | 5.284899 | 0.988506 | 0.996141 |
D5 | 311 | 363.7143 | 2.010801 | 0.491940 | 0.987830 |
D6 | 286 | 332.1220 | 2.608647 | 0.652277 | 0.990798 |
D7 | 276 | 352.6842 | 2.538871 | 0.697020 | 0.986049 |
3.5.2 Microbial community composition
(1) Phylum-level analysis of microbial community composition
There were significant phylum-level differences in microbial community structure of samples under different levels of AMD pollution (Fig. 11). Proteobacteria has been shown to dominate environments affected by AMD (Bao et al., 2017). The results of the present study observed a similar trend, with this phylum dominant in the seven samples in the study area, and particularly in samples under an acidic environment (D2, D3, D5, D6, D7), reaching a proportion of 83%. The average proportion of Proteobacteria in neutral water samples (D1, D4) was 36.01%. Firmicutes, Bacteroidetes, and Actinobacteria were also widely distributed in the study area, particularly in coal mine water gushing water (D4), reaching 23.57%, 17.88%, and 8.92%, respectively. Acidobacteria was relatively abundant in D1. The highest abundance of Euryarchaeota was in D2 (8.67%) characterized by the highest concentrations of SO42− and TFe and lowest pH, indicating that this phylum is found in areas of serious AMD pollution. AMD pollution and mineral composition appeared to significantly change the composition of microbial species.
(2) Genus-level analysis of microbial community composition
Dominant bacteria at the genus level at point D1 included Acidibacter, Sphingomonas, MND1, and RB41; at D4 they included Lachnospiraceae NK4A136 group, Ralstonia, Enterobacter, Pelomonas, and Sinomonas. Buffering by bicarbonate resulted in a close to neutral pH at D4 and this site had low metal ions concentrations. Consequently, microbial diversity at D4 was relatively high, whereas the proportion of sulfur-oxidizing microorganisms was relatively small. The relative abundance of Ferrovum among sampling points exceeded 60%, except at D2 in which it was 9.36%. Ferrovum is an iron-oxidizing bacterium that can fix carbon through the Calvin-Benson-Bassham cycle and is widely distributed in iron-containing acidic water (Hua et al., 2015). Acidithiobacillus was the dominant genus in D2 at 27.75%. Acidithiobacillus has been shown to tolerate acidic (pH < 2.5) and warm (30°C) water. The results showed that the distribution of microbial community structure was closely related to water pH and temperature. At the same time, the concentrations of SO42−and Fe in D2 exceeded those at other sites. This result indicated that Acidithiobacillus may have stronger acid production capacity. Acidithiobacillus ferrooxidans (At.f) was the only member of Acidithiobacillus at D2. This species can oxidize Fe2+ to Fe3+. The genus Metallibacterium was the third-most abundant in the study area and dominated D2 (21.21%). Microbes of genus Metallibacterium are tolerant to a wide range of pH environments, and similar to Acidithiobacillus, can obtain energy through oxidation-reduction of ferrous and sulfur compounds (Bartsch et al., 2017). In addition, D2 showed relatively high proportions of Acidibacter and Ferrithrix. Both genera represent thermophilic bacteria which have a tolerance for high temperatures (± 30°C).
These results suggest that AMD pollution significantly changes the diversity and community structure of microorganisms in the water environment, with serious AMD pollution significantly reducing microbial diversity and resulting in the dominance of acidophilic and sulfur/iron oxidizing bacteria. Acidophilic and sulfur/iron oxidizing bacteria further lead to water acidification. Oxidation facilitated by At.f and Metallibacterium results in the rapid acceleration of the cyclic conversion rate of sulfur in AMD, with metastable sulfur rapidly converted to SO42−. Abundance of Acidithiobacillus and Metallibacterium in D2 far exceeded that in D3, D4, and D5.Therefore, metastable sulfur in mine water (D2) was lower than that in other mine water samples.