Expression of ani in the larval nervous system
The ani gene is predicted to be relatively highly expressed in the larval CNS based on the RNA-seq analysis and to have three splice variants (SV-A, SV-B, and SV-C) in the Drosophila database, FlyBase (Fig. 1A) [16]. Therefore, we purified total RNA and proteins from the larval CNS and performed quantitative RT-PCR (qRT-PCR) and Western blot analyses to determine which splice variant was expressed in the larval CNS. The qRT-PCR with the primer set designed to detect SV-C or both SV-B and C showed only marginal amplification of the PCR signal. In contrast, qRT-PCR with the primer set designed to detect both SV-A and B showed extensive amplification of the signal (Fig. 1A, B), which is similar to results reported in early embryos [17]. These results suggest that SV-A is predominantly expressed in the larval CNS. In Western blot analysis with anti-Ani IgG, the 178 kDa band corresponding to Ani predicted to be encoded by SV-A was predominantly detected (Fig. 1C). The marginally detected 87 kDa and approximately 75 kDa bands may have been derived from SV-C or the degradation products of the 178 kDa product. These results were consistent with those of the qRT-PCR, indicating that SV-A is predominantly expressed in the larval CNS. Next, we performed immunofluorescence staining of the larval nervous system with anti-Ani IgG to comprehensively investigate Ani expression patterns. Ani signals were predominantly detected in proliferating cells of the CNS (Figs. 1, S1). In particular, this protein was highly expressed in the NBs marked by Deadpan (Dpn) in the brain lobe, ventral nerve cord (VNC), neural epithelium, and some lamina cells in the brain lobe (Fig. 1D). In contrast, Ani showed a mutually exclusive expression pattern with Dachshund (Dac), except for a few layers of cells next to the lamina furrow (LF) (Fig. 1D e, f). Although Dac is a marker for lamina precursor cells and neurons [18, 19], Dac and Ani were co-expressed in the proliferating cells that form a cell layer next to the LF in the outer proliferation center (Fig. 1D f).
Although most of the Ani was expressed in the cell nuclei of the CNS, except in cells expressing embryonic lethal abnormal vision (Elav), a neuronal marker (Figs. 2A, S2), Ani was also detected weakly in the nuclei of Elav-expressing cells in the optic lobe and VNC (Fig. 2B, S2). In addition, it was detected at the synaptic boutons in the neuromuscular junction (NMJ) (Fig. 2C) and axons (Figs. 2D, S3), whereas the strong and large signals in the PNS corresponded to the glial nuclei (Fig. 2D). Furthermore, the Ani dot signals in the axon were connected by a filament-like structure and were localized between the plasma membrane and neural lamella, where perineurial and subperineurial glia are located outside the neurons (Figs. 2D, S3) [20]. These results suggest that Ani functions, not only in proliferating cells, but also in non-proliferating cells in the Drosophila larval nervous system.
ani knockdown in the CNS induces defective neurological phenotypes
We knocked down ani using the elav-GAL4 driver, a pan-neuronal driver, or OK371-GAL4, a glutamatergic neuronal GAL4 driver [21], combined with two independent ani-RNAi lines to investigate the role of ani in the neurons of the Drosophila nervous system. We then analyzed the phenotypes of the knockdown flies (Figs. 3, S3). The expression levels of ani mRNA and Ani in the CNS were evaluated using qRT-PCR, Western blotting, and immunostaining with anti-Ani IgG. ani mRNA levels decreased to 30% and 19% in elav > ani-IR33465 and elav > ani-IR53358, respectively (Fig. 3A). Similarly, Ani levels in the CNS of the ani knockdown larvae decreased (Figs. 3B, C, S4). Furthermore, the target sequences of ani-IR33465 and ani-IR53358 corresponded to nucleotide positions 616–953 and 597–617 of SV-A, respectively, which overlap by only two nucleotides. Data from a BLAST search against the EST database and information on the Vienna Drosophila Resource Center (VDRC) homepage predicted no off-target effect in these IR strains. These results indicate that the knockdown efficiency was higher for elav > ani-IR53358 than for elav > ani-IR33465. We investigated the larval learning and locomotor ability of the pan-neuronal ani knockdown flies to elucidate the role of ani in the nervous system. First, we performed an odor-taste associative learning assay with early-stage third-instar larvae to examine their learning ability [22]. Although Drosophila larvae showed no preference between amylacetate (AM) and octanol (OCT) without training, control larvae learned the association between odors and rewards. Thus, we calculated a learning index based on the AM preference after training. The learning index considerably decreased in elav > ani-IR53358 larvae and slightly decreased in elav > ani-IR33485 larvae. However, the difference was not statistically significant (Fig. 3D). Next, we performed a crawling assay to investigate the effect of ani knockdown on larval locomotor abilities. elav > ani-IR53358 and elav > ani-IR33485 larvae showed significantly reduced locomotor ability and slightly decreased crawling speed, respectively (Figs. 3E, F).
Although most elav > ani-IR33465 flies survived until adulthood, almost all elav > ani-IR53358 died during the pupal stage. All escapers, albeit few, were considerably weak and died within a day after eclosion. The median longevity of ani knockdown flies was 28 d (elav > ani-IR33465) and 1 d (elav > ani-IR53358), which was markedly shorter than that of the control flies (38 d) (Fig. 3G). Next, we examined the locomotor ability of only elav > ani-IR33465 adult flies using a climbing assay because the escapers in the elav > ani-IR53358 group failed to climb the wall and died the day after eclosion. The climbing ability of three-day-old elav > ani-IR33465 flies showed substantial defects (Fig. 3H). These results indicate that ani plays essential roles in elav-expressing cells of the Drosophila nervous system and that defective ani knockdown in elav > ani-IR53358 flies is more severe than that in elav > ani-IR33465 flies.
ani knockdown in the CNS leads to abnormal neuropil formation and increases the cell size
Because the mushroom body of the larval brain is the center of olfactory associative learning and memory ability [23–25], we conducted immunostaining of the CNS with anti-Brp IgG and anti-CadN IgG to visualize the mature neuropil [26, 27]. Both Brp and CadN expression patterns were abnormal in elav > ani-IR53358 larvae, especially the size of the BRP area in the brain lobe and the distribution patterns of CadN in the optic lobe and thoracic ganglion in the VNC (Fig. 4A). The ratio of the neuropil area to the brain lobe area markedly decreased in both elav > ani-IR33465 and elav > ani-IR53358 larvae (Figs. 4B, C).
Elav was believed to be exclusively expressed in post-mitotic neurons [28, 29]. However, its expression has been demonstrated in almost all embryonic lateral glial cells and some NBs. In addition, elav-GAL4 drivers (458: elavC155-GAL4, 8765: elav.L2-GAL4), which were not used in this study, modulate the expression of the reporter gene in embryonic glial cells and mitotically active cells [30]. Furthermore, the expression patterns of elav-GAL4 drivers differ between elavC155-GAL4 (458) and other drivers (8760, 8765) [31]. Therefore, we monitored the mCD8-GFP reporter to investigate the expression pattern of elav-GAL4 (8760) in the larval CNS, particularly in the brain lobe. elav-GAL4 induced the expression of the reporter in cells expressing the Ani or NB marker Dpn, especially on the dorsal side of the larval brain lobe (Fig. S5). These results suggested that ani was knocked down in the NB with the elav-GAL4 driver. Therefore, we examined the distribution patterns of neurons and glial cells in the larval CNS of ani knockdown flies. The distribution patterns of neurons and glial cells in the CNS, especially in the elav > ani-IR53358 larvae, were drastically perturbed, and the size of the brain lobe markedly increased (Figs. 5A, B). In addition to defects in the distribution patterns of neurons and glial cells, the size of the cells was drastically enlarged in the elav > ani-IR53358 larvae (Fig. 5C). Similarly, the size of the whole CNS was drastically enlarged (Figs. 3C, 5A). However, the CNS shape was similar to that of the control. In addition, the ani knockdown larvae could crawl, although their crawling speed was significantly slower than that of the control larvae (Figs. 3E, F).
ani knockdown in the CNS affects the morphology of the NMJ and expression patterns of CadN in the NMJ
ani knockdown larvae showed locomotor defects. Therefore, we investigated whether motor neurons in the ani knockdown larvae had defects by examining the morphology of the NMJ, a specialized synapse between the nerve terminals of motor neurons and muscles. A detailed inspection of the NMJ revealed a substantial increase in the total branch length of synapses, the number of synaptic branches, and mature bouton numbers. In contrast, bouton sizes considerably decreased in elav > ani-IR53358 larvae (Fig. 6). Although the effect was weaker than that in elav > ani-IR53358 larvae, elav > ani-IR343465 larvae also showed a statistically significant increase in the number of synaptic branches and a decrease in bouton size (Fig. 6). Ani, an F-actin-binding protein, contributes to cytoskeleton formation at the edge of cells during neuronal migration and the strength of epithelial cell-cell adhesion [7, 11]. In addition, F-actin binds to catenin and cadherin, regulating adhesion between pre-and post-synapsis [32, 33]. Therefore, we hypothesized that ani contributed to the strength of adhesion between pre- and post-synaptic cells. As synaptic cell adhesion molecules, such as CadN, Capricious, Dscam, and Fasciclin II (Fas II), play important roles in the connection between pre-and post-synaptic cells, we evaluated the expression pattern of CadN in the NMJ of ani knockdown larvae. In the synaptic boutons in the NMJ of both lines of ani knockdown larvae, the size of the CadN foci and the total intensity of CadN significantly decreased whereas the number of CadN foci did not change (Fig. 7). These results suggest that CadN levels were decreased and that CadN clustering was impaired in the NMJ of the ani knockdown larvae.