All experimental procedures were approved by the Animal Experimentation Ethics Committee of the Tokyo Metropolitan Institute of Medical Science (49040).
Experimental model
Animals
The original lines of RP58 mutant mice (Rp58 homo-KO mice) were established as a C57/BL6 congenic line (a genetic background strain) through repeated back-crosses, as described previously (8). Since Rp58 homo-KO mice die immediately after birth, Rp58 hetero-KO mice and wild-type mice were used to investigate the pathogenesis of RP58 haploinsufficiency. All mice were maintained under a 12:12 h light/dark cycle (lights on at 8:00 AM). Efforts were made to minimize the number and suffering of animals used, in accordance with the 3Rs principle of reduction, replacement, and refinement, as stipulated by the Animal Welfare and Control Law. Experiments were performed during adolescence (young) stages (2 months), adulthood (4–5 months), and old age (12–18 months) (Fig. 1A). The influence of the menstrual cycle could not be ruled out in female mice; therefore, behavioral assessments were performed using male mice. For example, female mice in estrus or proestrus explore relocated objects more than female mice in diestrus (20–22).
Behavioral assessments
Male mice were habituated to a behavioral room for at least 1 h prior to the start of the behavioral test. Mice that displayed outlier behavior, that is, greater or less than two standard deviations from the mean, were not included in behavioral analysis (3–10 in each group).
The object location test consisted of three phases as described previously (23). All phases were performed under a light intensity of 10 lux. On day 1, the animals were placed into an empty square box (50 × 50 cm2) for 10 min. On day 2, the animals were placed into the same box for 10 min with two identical, unfamiliar, objects. On day 3, the animals were placed into the same box, in which one of the two objects were displaced to a novel location. The discrimination index was calculated as the ratio of the time the animal spent exploring the novel place to the time they spent exploring the familiar place for 10 min: discrimination index = (time exploring the novel place - time exploring the familiar place)/(time exploring the novel place + time exploring the familiar place). Every day, the exploration time in each place was calculated automatically using a DVTrack video tracking system (Muromachi, Tokyo, Japan).
For the open field test, each mouse was placed in the center of the apparatus (50 × 50 cm2) and was allowed to move freely for 30 min. All phases were performed under a light intensity of 10 lux. Horizontal activity was collected every 10 min using the DVTrack video tracking system (Muromachi, Tokyo, Japan).
The rotarod test consisted of five trials with 1 h intervals between trials. Prior to the test, to habituate the mice to the rotarod, the animals were placed for five minutes on a drum (3 cm diameter; MK-660B; Muromachi Kikai Co., Ltd., Tokyo, Japan) that was rotating at 1- and 4 rpm. An accelerated rotarod test was used to assess motor learning ability from 1–40 rpm over a period of five minutes.
The fear conditioning test consisted of three phases as described previously (23). On day one, the animals were placed into a triangular box for 5 min under a light intensity of 30 lux. On day 2, the animals were placed into a square box with a stainless-steel grid floor and were allowed to explore the box freely for 2 minutes. Subsequently, a tone, which served as the conditioned stimulus (CS), was presented for 30 sec. During the last 1 sec of the presentation of the CS, a 0.75 mA electric shock was applied, which served as the un-conditioning stimulus (US). Two more CS-US parings were presented with a 1-minute inter-stimulus interval under a light intensity of 100 lux. On day 3, the animals were placed into the same square box as used on day 2 for 5 minutes under a light intensity of 100 lux. In each test, the percentage of freezing time and distance traveled (cm) were calculated automatically using ImageFZ software (O’Hara & Co., Tokyo, Japan). Freezing was taken to indicate that the mice remembered the box (context) in which they were exposed to the electrical shock.
Electrophysiology
Mice were anesthetized with isoflurane (1.5%) and implanted with a custom-designed electrode comprising two tetrodes in the CA1 area of the hippocampus (1.8 mm anterior to bregma, 1.4 mm lateral to the midline, and 1.2 mm from the brain surface). Individual tetrodes consisted of four twisted polyimide-coated tungsten wires (single wire diameter, 12.7 µm; California Fine Wire, Grover Beach, CA). One additional screw was threaded into the bone above the cerebellum as a reference and for grounding. The electrodes were connected to an electrode interface board (EIB-18, Neuralynx, MT) on a microdrive. Behavioral assessments were performed at least one week after surgery.
Local field potential (LFP) recordings at a sampling rate of 30 kHz were obtained with open-source hardware (Open Ephys, Cambridge, MA) while mice were engaged in the object location test. For synchronization with behavioral data, a transistor-transistor logic pulse was used. After the recordings, electrode lesions were induced with direct current (20 µA) stimulation for 10 sec using one of the four tetrode leads.
Analysis of electrophysiology data
All data analyses were performed using the built-in software in MATLAB (MathWorks, Inc., MA). LFPs were down-sampled to 1,000 Hz and the data were extracted 1 sec before and after contact with the objects. Theta power was calculated by recording the mean value of the power spectrum between 4 and 8 Hz. This value was normalized to the theta power of mice during walking.
Immunohistochemistry
Male and female mice in adolescence, adulthood, or old age were anesthetized with isoflurane, and sequentially transcardially perfused with phosphate-buffered saline (PBS) and 4% paraformaldehyde (PFA) in PBS. The brains were removed, post-fixed, cryoprotected in 20% sucrose overnight and then in 30% sucrose for two days at 4℃, embedded in optimal cutting temperature compound, and frozen at -30℃. Coronal sections (20 µm-thick) of mouse brains were then obtained with a cryostat. Free-floating sections containing the hippocampus were incubated in HistoVT One (Nakalai, Kyoto, Japan) at 70 ℃ for 20 min, incubated in 0.4% Block Ace diluted in PBS containing 0.2% TritonX (DS Pharma Biomedical, Osaka, Japan) in PBS at room temperature (RT) for 20 min, and then incubated with primary antibodies (Supplemental Table 1). Primary antibodies were diluted 1:500 in PBS containing 0.3% Triton X-100. The sections were then incubated with secondary antibodies (Jackson, ME) (diluted 1:500 in PBS containing 0.3% Triton X-100).
For GluR2, Rp58, and parvalbumin (PV) triple staining, tissue sections (50 µm thick) were incubated at RT for 20 minutes in 1% H2O2 after incubation with HistoVT. After further incubation in PBS containing 1% BlocAce and 0.2% TritonX100, sections were incubated with rabbit anti-GluR2 (1:500), chicken anti-RP58 (1:1000), and goat anti-PV antibody (diluted 1:1000 in PBS containing 0.4% BlocAce) and then incubated with secondary antibody (diluted 1:1000 in PBS). To enhance the GluR2 signal, a biotinylated secondary antibody was reacted with the GluR2 antibody, and the biotin was labeled with horseradish peroxidase (HRP) using the VACTASTAIN Elite ABC-HRP Kit (Vector #PK-6100). GluR2 was detected using Tyramide Signal Amplification (TSA) Cyanine 3 (Perkin Elmer #FP1046). The tissue sections were incubated with DAPI (Nacalai Tesque, Kyoto, Japan) for nuclear staining. Micrographs of immunofluorescence-stained sections were captured and digitized using a FluoView® FV3000 confocal laser scanning microscope (Olympus, Tokyo, Japan).
Analysis of immunostaining
To quantify single-stranded DNA (ssDNA) and gamma H2AX in cells, the number of cells with five or more nuclear ssDNA foci or gamma H2AX foci was counted (24). For the analysis of microglia states, immunostaining with an antibody against CD68 was performed. CD68 is a lysosomal-associated protein found in macrophages/microglia and is associated with phagocytic cells. An Iba1 antibody was used as a marker for both resting and activated microglia. Microglia with aggregated CD68 expression were categorized as reactive, and the percentage of reactive microglia was compared between groups (25, 26). Antibody information is provided in the Key Resources table.
Irradiation and immunohistochemistry
Animals were irradiated with a dose of 0.3 Gray. At 1-, 6-, or 24 h after irradiation, mice were anesthetized with isoflurane and transcardially perfused with PBS followed by 4% PFA in PBS. Subsequent steps were similar to those described earlier under immunohistochemistry.
Electron microscopy
Adult male and female mice were anesthetized with isoflurane and transcardially perfused with saline followed by 2% PFA and 2.5% glutaraldehyde in 0.1 mol/L phosphate buffer (pH 7.4). The brains were removed, post-fixed, and coronal sections of the mouse brain containing the dentate gyrus were then obtained with a VT1200S microtome (300 µm) (Leica, Wetzlar, Germany). Micro-dissected areas were post-fixed for 2 h at 4 ℃ in 2% osmium tetroxide in 0.1 mol/L cacodylate buffer. Tissue blocks were dehydrated sequentially in 50% ethanol for 5 min, 70% ethanol for 15 min, 80% ethanol for 15 min, 90% ethanol for 15 min, and in 100% ethanol at RT for 20 min. The tissues were then subsequently infiltrated with propylene oxide three times for 10 min each, treated with a 1:1 solution of propylene oxide:epoxy resin for 2 h, and then incubated in epoxy resin overnight. Each block was placed flat on glass microscope slides and horizontally mounted on gelatin capsules (Lilly, IN). After embedding, each block was polymerized in epoxy resin (EPON 812, TAAB, Berkshire, England) at 60°C for 48 h. Polymerized blocks were trimmed to a section containing the dentate gyrus using an ultramicrotome PowerTomeX (RMC Boeckeler, AZ). Semi-thin (1 µm) sections were stained with toluidine blue and used to guide further cutting of the specimen block to ultra-thin sections (50–80 nm). Ultra-thin sections were placed in formvar-coated single-slot grids. After staining with uranyl acetate and lead citrate, ultra-thin sections were observed under a JEM-1400 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a bottom-mounted charge-coupled device camera and subsequently processed using ImageJ.
Quantification of ultrastructural defects: Quantification of mitochondrial ultrastructural defects was performed on transmission electron microscopy images acquired at a magnification of 10,000×. Although mitochondria are sparse within astrocytic processes of the dentate gyrus, the criteria used by Sisková et al. (27) for the identification of astrocytes and neuronal cells were applied to ensure that predominantly, if not exclusively, neuronal mitochondria were observed. Every mitochondrion of neuronal origin was analyzed and, based on its ultrastructural appearance, classified into one of the following categories according to Sisková et al. (28): intact mitochondria with normal-appearing cristae (Type I); abnormal mitochondria with either swollen, irregular, or whirling cristae (Type II); mitochondria with a discontinuous outer membrane or deficient cristae (Type III); and mitochondria with both swollen and deficient cristae or with both a discontinuous outer membrane and swollen cristae (Type IV). At least 14 mitochondria from each region were analyzed per animal.
Drug treatment
Minocycline was administered in drinking water to wild-type and Rp58 hetero-KO mice from weaning to the day before the behavioral test or perfusion. Minocycline was dissolved at a concentration of 0.015 mg/mL in filtered water.
Transcriptome analysis
Three independent total RNA samples from hippocampi of mice in each group were mixed and purified using a RNeasy Plus Universal Kit (Qiagen, Hilden, Germany). RNA quality was assessed using a 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA). Cy3-labeled complementary RNA was prepared using a Low Input Quick Amp Labeling Kit (Agilent Technologies) in accordance with the manufacturer’s protocol. Samples were hybridized to the SurePrint G3 Mouse Gene Expression v2 Microarray (G4852B; Agilent Technologies). Thereafter, the array was washed and scanned using the SureScan Microarray Scanner (Agilent Technologies). Microarray images were analyzed using Agilent’s Feature Extraction software (Agilent Technologies) with default settings for all parameters. Data from each microarray analysis were normalized by shifting to the 75th percentile without baseline transformation. Microarray results were deposited in the Gene Expression Omnibus database under the accession number GSE207955.
Statistical analysis
Group data are presented as the mean ± SEM. The statistical significance of between-group differences was assessed by the one sample t-test for the object location test, a two-way repeated ANOVA followed by Holm’s test for the open field, rotarod, and fear conditioning tests, Dunnett’s test for immunostaining, Pearson’s chi-squared test for electron microscopy, and the paired t-test for theta power in the hippocampal CA1 region, using JMP software (SUS Institute, NC).