Identification of the Critical Genes in CHD
The CHD-related datasets used for bioinformatics analysis in this study were acquired from GEO and consisted of GSE21610 [22] and GSE66360 [23]. Information on the GSE21610 and GSE66360 datasets is shown in Table 1. Bioinformatics analysis included differential expression analysis of the GSE21610 and GSE66360 datasets, as well as GO and KEGG enrichment analysis of DEGs, which were performed using NetworkAnalyst [24] and ClueGO APP within Cytoscape software [25], respectively. Intersecting DEGs from the GSE21610 and GSE66360 datasets were predicted for interaction using the String database, and protein–protein interaction (PPI) network analysis was performed using Cytoscape software.
Table 1
Information on the GSE21610 and GSE66360 datasets
| GSE21610 | GSE66360 |
Organism | Homo sapiens | Homo sapiens |
Experiment Type | Array | Array |
Platform | GPL570 | GPL570 |
Tissue/Cell Type | Myocard | CD146 + Circulating Endothelial Cells |
Group: Sample (n) | Health: GSM545657-GSM545664 (8) CHD: GSM545665-GSM545694 (30) | Health: GSM1620862-GSM1620876 and GSM1620892-GSM1620904 (28) CHD: GSM1620877-GSM1620891 and GSM1620905-GSM1620917 (28) |
Isolation and Characterization of Human-derived Circulating Endothelial Cells (CECs)
Peripheral blood samples were obtained from healthy individuals undergoing physical examination and CHD patients attending Yan'an Hospital Affiliated with Kunming Medical University, with six samples for each group. The study was approved (NO. 2021-056-01) by the Ethics Committee of Yan'an Hospital Affiliated with Kunming Medical University. All patients consented to the study and signed an informed consent form. Patients diagnosed with CHD exhibit coronary artery stenosis exceeding 50% or a history of prior myocardial infarction. Briefly, peripheral blood was centrifuged to isolate peripheral blood mononuclear cells (PBMCs) from healthy individuals and CHD patients at a concentration of 1×105 cells/µl in PBS. PBMCs obtained from healthy individuals and CHD patients were incubated with 5 µl of CD146 monoclonal antibody (14-1469-82, Invitrogen, USA) for 30 min. Subsequently, samples from each group were sorted and quantified using a Moflo AstriosEQ ultrahigh-speed flow cytometer (B25982, Beckman, USA).
Culture and infection of endothelial cells
Mouse aortic endothelial cells (MAECs) were obtained from BNCC (BNCC359881, Beijing, China). MAECs were cultured in endothelial cell-specific medium supplemented with ECM, FBS, ECGS and P/S (BNCC364799, Beijing, China). Genomeditech (Shanghai) Co., Ltd., designed, synthesized, and packaged lentiviral vectors for SGK1 knockdown and NEDD4L overexpression. The shRNA sequences targeting SGK1 were GCAACACCTATGCATGCAAAC, GGCAGAAGAAGTATT CTATGC, and GGAATGTTCTGTTGAAGAATG. The vectors used for the SGK1 knockdown lentivirus and NEDD4L overexpression lentivirus were PGMLV-SB3 RNAi and pcDNA3.1-VSVg, respectively. MAECs were randomly divided into Con, Erastin, KD-NC, KD-SGK1, OV-NEDD4L, and PMA groups. MAECs in the KD-SGK1, OV-NEDD4L and PMA groups were transfected with SGK1 knockdown lentiviruses, while those in the OV-NEDD4L group were cotransformed with NEDD4L overexpression lentivirus. MAECs in the Erastin, KD-NC, KD-SGK1, OV-NEDD4L, and PMA groups were treated with 10 µM Erastin (S7242, Selleck, USA) for 48 h, while those in the PMA group received an additional treatment with 20 ng/ml PMA (NF-κB pathway activator; HY-18739, MCE. USA).
Flow Cytometry of Endothelial Cells
A DCFH-DA Kit (HY-D0940, MCE, USA), BODIPY 581/591 C11 Kit (HY-D1301, MCE, USA), and Phen Green SK Diacetate (HY-126823, MCE, USA) were used in conjunction with flow cytometry to assess lipid peroxidation and Fe accumulation in MAECs. Briefly, DCFH-DA, C11-BODIPY, and PGSK probes were adjusted to final concentrations of 10, 5, and 5 nM, respectively, in serum-free culture medium and incubated with MAECs for 20 min. MAECs were assayed using a Cytek Aurora full-spectrum flow cytometer (Cytek Biosciences, USA) to determine the percentage of cells exhibiting DCF+, C11-BODIPY+, and quenched phen green fluorescence. The emission/excitation of the DCFH-DA, C11-BODIPY and PGSK probes were 517/492, 510/500 and 532/507, respectively.
RT‒qPCR Assay for CHD-related DEGs
The expression levels of CHD-related DEGs (DDX3Y, EIF1AY, KDM5D, RPS4Y1, SGK1, USP9Y, and NSG1) were detected by RT‒qPCR in circulating endothelial cells (CECs) obtained from healthy individuals and patients with CHD. Briefly, RNA extraction and qualification were conducted using TRNzol Universal (DP424, TianGen, Germany) and SolidSpec-3700i/3700i DUV spectrophotometers (Shimadzu, Japan) in CECs, respectively. Subsequently, reverse transcription and amplification of the target gene were carried out using the OneStep RT‒qPCR Kit (210212, QIAGEN, Germany) for each sample group, and the cycle threshold (Ct) was detected using the QuantStudio 6 Pro system (A43161, Applied Biosystems, USA). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) served as the internal reference for the target genes (DDX3Y, EIF1AY, KDM5D, RPS4Y1, SGK1, USP9Y, and NSG1), with primer sequences detailed in Table 2.
Table 2
RT‒qPCR primer sequences for the target genes.
Name | Sequence | Length (bp) |
GAPDH (H)-F | TTGCCCTCAACGACCACTTT | 120 |
GAPDH (H)-R | TGGTCCAGGGGTCTTACTCC |
USP9Y (H)-F | TACTGTTCTACGGTCTTC | 78 |
USP9Y (H)-R | TAATGTCACCTCAGGATAA |
EIF1AY (H)-F | CCGAGACTACCAGGATAACA | 78 |
EIF1AY (H)-R | CCGTATGCCTTCAGACTTC |
RPS4Y1 (H)-F | GAGACTGGCAAGATTACT | 92 |
RPS4Y1 (H)-R | ATCACACCAATTCTTCCTA |
KDM5D (H)-F | ATTGAGAAGCATCCAGAG | 93 |
KDM5D (H)-R | CTTATCCTTATCCTTAGCCATA |
SGK1 (H)-F | AAGACACAAGGCAGAAGAA | 101 |
SGK1 (H)-R | CATTCCGCTCCGACATAA |
DDX3Y (H)-F | CGCTATATTCCTCCTCATT | 102 |
DDX3Y (H)-R | GCTATACGCATCCTTATCT |
NSG1 (H)-F | GGATAAGGTGGTCGTGAA | 90 |
NSG1 (H)-R | ACGGTGAACTCAGCAATT |
Note: H, F and R represent Homo sapiens, forward primer and reverse primer, respectively. |
Western blot analysis for ferroptosis-related markers
The protein expression levels of ferroptosis-related markers (SLC7A11, GPX4, and ACSL4), SGK1, NEDD4L, p-P65, and P65 in each group of MAECs were detected using RT‒qPCR. Briefly, protein extraction and determination of the protein concentration in MAECs were performed using a ProteoPrep Kit (PROTTOT-1KT, Merck, USA) and a SolidSpec-3700i/3700i DUV spectrophotometer (Shimadzu, Japan), respectively. Protein samples from MAECs were subjected to SDS‒PAGE and transferred to PVDF membranes in a sandwich format. PVDF membranes were incubated with the corresponding primary and secondary antibodies, which included antibodies against SLC7A11 (ab307601, Abcam, USA; 1:1000), GPX4 (ab125066, Abcam, USA; 1:10000), ACSL4 (66617-1-Ig, Proteintech, USA; 1:10000), SGK1 (ab32374, Abcam, USA; 1:500), NEDD4L (13690-1-AP, Proteintech, USA; 1:5000), p-P65 (bs-3485R, Bioss, China; 1:200), p65 (bs-23217R, Bioss. China; 1:200), β-actin (ab8227, Abcam, USA; 1:1000), AffiniPure™ goat anti-rabbit (111-005-003, Jackson ImmunoResearch, USA; 1:1000), and AffiniPure™ goat anti-mouse IgG (115-005-044, Jackson ImmunoResearch, USA; 1:1000). A ChemiDoc MP System (Bio-Rad, USA) was utilized to capture and acquire representative images of the target proteins.
GSH and GSSG Assays
Briefly, according to the instructions of the GSSG kit (BC1185, Solarbio, China) and GSH kit (BC1175, Solarbio, China), the supernatant of MAECs (20 µl) was supplemented with reagent II (140 µl) and reagent III (40 µl) from the GSH kit and reagent II (1 µl), reagent III (140 µl), reagent IV (20 µl), reagent V (20 µl), and reagent VI (2 µl) from the GSSG kit. The optical densities of GSSG and GSH were measured at 412 nm on a SolidSpec-3700i/3700i DUV (Shimadzu, Japan), and the contents of GSSG and GSH were calculated from a standard curve.
Statistical analysis
Statistical analysis was conducted using GraphPad Prism software. The Mann‒Whitney test or Student’s t test was used for comparisons between two groups, while the Kruskal‒Wallis test or one-way ANOVA was used for comparisons among multiple groups. Two-way ANOVA was used to analyze differences in MAEC activity at different time points among multiple groups. P < 0.05 indicated that the difference was statistically significant. CHD-associated DEGs satisfying both |log2FoldChange (FC)|>1 and adjusted P < 0.05 were identified.