2.1 LGR4 expression analysis
Gene Expression Profiling Interactive Analysis (GEPIA) and Human Protein Atlas (HPA) database were applied for public data analysis (the website of GEPIA is http://gepia.cancer-pku.cn/ and the website of HPA ishttps://www.proteinatlas.org/). LGR4 expression in the tumor tissues of brain lower grade glioma was compared to that in TCGA and GTEx. In addition, GEPIA was also used to calculate the overall survival of brain lower grade glioma patients based on LGR4 expression. Furthermore, HPA exhibited the expression of LGR4 in the brain tissues of patients with or without GBM.
2.2 Cell culture and transfection
GBM cell lines (U-251 MG, A172, HS683, KNS89, U-87 MG, U-118 MG) were supplied by Sai Baikang Biotechnology (China), and human astrocytes (SVGP12) were obtained from ATCC (USA). In addition, mouse astrocytes used in the study were extracted from the mouse as described previously[13]. All cells were cultured in dulbecco's modified eagle medium medium containing 10% fetal bovine serum (FBS) at 37℃ in a CO2- and humidity-controlled incubator.
For cell transfection, small interfering RNA (siRNA) targeting human LGR4 and CBL (si-LGR4 and si-CBL), overexpression vector of LGR4 and EGFR (oe-LGR4 and oe-EGFR) as well as respective negative controls (si-NC and vector) were synthesized by Shanghai Jima Pharmaceutical Technology Company Limited (China). All cells were transfected with Lipofectamine 3000, and harvested 48 h after transfection.
2.3 CCK-8 assay
Cellular viability was evaluated with CCK-8 Assay Kit (C0039, Biyuntian, China). In short, cells were seeded and cultured with or without BAI in 96-well plates. Upon incubation for a predetermined time, CCK-8 solution (10 µL) was added into each well and culture for another 4 h. Thereafter, absorbance at 450 nm was tested using a microplate reader (CMaxPlus, MD, USA).
2.4 Counting the number of cells
The cells were grown in medium with 0, 20, 40 and 80 µM of BAI at 37℃ in a CO2- and humidity-controlled incubator. After 48 h, the medium was removed and photographed by a light microscope to count the number of cells.
In addition, clone formation assay were conducted to evaluated proliferation ability of the cells. In short, cells were seeded in 6-well plates containing or not containing BAI. Every 3 days, the media was replaced. Following 2 weeks of culture, cells were rinsed by phosphate buffer saline (PBS), fixed with paraformaldehyde, and stained by crystal violet. Then, the images of the wells were scanned and the number of colonies was calculated to assess the ability of cellular proliferation. Colonies containing 50 or more cells were considered a clone.
2.5 5-ethynyl-20-deoxyuridine (EdU) assay
Cell proliferation was detected by adopting EdU cell proliferation kit (C0078s, Biyuntian, China). Briefly, cells were seeded into a 12-well plate. Following treatment, EdU was applied to incubate the cells for 4 h. Then, cells were fixed by 95% ethanol and infiltrated in 0.3% TritonX-100. Subsequently, the cells reacted with 0.5 mL of Click reaction mixture and 1 mL of 4',6-diamidino-2-phenylindole (DAPI), both reactions were conducted under a light-shielding environment. Finally, the staining results were visualized with a fluorescence microscope.
2.6 Apoptosis detection
Cells were seeded in 6-well plates, and cultured with or without BAI for suitable times. Then, cells were collected, rinsed using ice-cold PBS twice and centrifuged to obtain cell suspension. Thereafter, cells were stained with 5 µL Annexin V-FITC and 10 µL PI at room temperature (RT) in darkness (556547, BD, Singapore). In the end, the apoptosis rate of the cell was determined with the help of flow cytometry (NovoCyte, Agilent, China) within 1 h.
2.7 Transwell assay
Cell invasion as well as migration were assessed by Transwell assay. For invasion assay, cells in serum-free media were added to the upper chamber pre-coated with matrigel (356234, BD, USA) after treatment. Medium containing 10% FBS was loaded into the bottom chamber. After incubation for 24 h, the cells invading to the bottom chamber were fixed by formaldehyde, dyed with crystal violet and calculated under the microscope. For the migration assay, all the steps were the same as those conducted in the invasion assay except that matrigel was not used in the upper chamber.
2.8 RNA extraction and quantitative PCR (qPCR)
After treatment, the total RNA of the cell lines was extracted using EZ-10 Total RNA Miniprep Kit (B618583-0100, Sangon Biotech, China), and transcribed to cDNA reversely by Reverse Transcription Kit (CW2569, CWBio Co., Ltd., China). To quantify the expression of target genes, quantitative PCR was carried out with a SYBR Green qPCR kit (11201ES08, Yeasen, China) and specific primers. All the primer sequences used in the research were presented in Table 1.
Table 1
Gene
|
Forward Primer
|
Reverse Primer
|
Human LGR4
|
ACTCAAAGTTCTAACGCTCCAG
|
AAAGCACTCAGCCCTCGAATG
|
Human AXIN2
|
CAACACCAGGCGGAACGAA
|
GCCCAATAAGGAGTGTAAGGACT
|
Human CD44
|
CTGCCGCTTTGCAGGTGTA
|
CATTGTGGGCAAGGTGCTATT
|
Human SOX2
|
GCCGAGTGGAAACTTTTGTCG
|
GGCAGCGTGTACTTATCCTTCT
|
Human OCT4
|
CTGGGTTGATCCTCGGACCT
|
CCATCGGAGTTGCTCTCCA
|
Human β-actin
|
CATGTACGTTGCTATCCAGGC
|
CTCCTTAATGTCACGCACGAT
|
2.9 Western blotting
The total proteins of the cells and tissues were isolated with RIPA buffer (P0013B, Biyuntian, China), loaded and run on a 10% sodium dodecyl sulfate-PolyacrylamideGel Electrophoresis, and transferred to Polyvinylidene difluoride membranes (IPVH00010, millipore, USA). After blocking with 5% non-fat milk, the membranes were probed by the primary antibodies overnight at 4℃. On the second day, the membrane reacted with secondary antibodies. Thereafter, the protein blots were developed and β-actin was served as a control. The information on the primary antibodies applied in the study were exhibited in Table 2.
Table 2
Antibody
|
Source
|
Cat No.
|
Dilutions
|
LGR4
|
BIOSS
|
bs-22163R
|
1:1000
|
Bax
|
Affinity
|
AF0120
|
1:1000
|
Bcl-2
|
Affinity
|
AF6139
|
1:1000
|
Caspase-3
|
abcam
|
ab13847
|
1:500
|
β-catenin
|
Affinity
|
AF6266
|
1:1000
|
E-cadherin
|
proteintech
|
20874-1-AP
|
1:5000
|
Vimentin
|
abcam
|
ab20346
|
1:1000
|
p-EGFR
|
Affinity
|
AF3044
|
1:1000
|
EGFR
|
abcam
|
bs-22163R
|
1:1000
|
β-actin
|
Affinity
|
AF7018
|
1:10000
|
Bax
|
CST
|
2774S
|
1:1000
|
Bcl-2
|
CST
|
15071S
|
1:1000
|
Caspase-3
|
CST
|
9662S
|
1:1000
|
CTNNB1
|
CST
|
9562S
|
1:1000
|
E-cadherin
|
CST
|
14472S
|
1:1000
|
Vimentin
|
CST
|
5741S
|
1:1000
|
EGFR
|
CST
|
54359S
|
1:1000
|
β-actin Antibody
|
Abcam
|
ab6276
|
1:5000
|
2.10 Ubiquitination assay
Ubiquitination assay was conducted with MG132. In short, after finishing transfection, cells were split into 4 groups according the transfected siRNA as following, MG132 groups was treated with MG132, while the other groups were treated with the same volume of dimethyl sulfoxide (DMSO). 8 h later, the cells were collected and analyzed by western blotting.
2.11 Protein turnover assay
After transfection with specific plasmids, 100 µg/m of cycloheximide (CHX) was added to the cells. After incubation for the indicated time, the cells were collected and western blotting was conducted.
2.12 Biophysical Techniques
The binding affinity between LGR4 and BAI was quantified by microscale thermophoresis (MST), which was conducted using Monolith NT.115 instrument. LGR4 was labeled by Monolith Protein Labeling Kit RED-NHS 2nd Generation Kit. Then, the affinity was measured under MST buffer. In short, the sample were immersed in NT.115 standard treated capillaries. Then, we performed the measurements at 40% IR power, a fixed concentration of labeled LGR4 as well as constantly increasing concentration of BAI. Finally, MO. Affinity Analysis software was applied for data analysis.
2.13 Cellular thermal shift assay (CETSA)
Cells were treated with BAI (80 µM) or DMSO (0.1% v/v) for 1 h. Then, the cells were harvested and distributed into 7 tubes equally. Each tube was heated for 3 min at the following temperature: 41℃, 43℃, 47℃, 50℃, 53℃, 56℃, and 61℃, then the tubes were cooled for 3 min at RT. Then, the samples underwent freeze-thaw cycles for 3 times with liquid nitrogen to lyse the cells. After the reaction, the lysates were centrifuged, and the supernatants were collected for western blotting analysis.
2.14 In vivo experiments
All animal experiments were approved by the Animal Experimentation Ethics Committee of Zhejiang Eyong Pharmaceutical Research and Development Center (Certificate No. SYXK (Zhe) 2021-0033) and followed up with the guidelines of the Institutional Animal Care and Use Committee. Male BALB/c nude mice (5–6 weeks old, 17–20 g) in SPF condition were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd. All mice were kept in controlled light (12 h light/dark period), temperature (20℃-24℃) and humidity (50%-60%) room with free access to food and water. The transfected HS683 cells in the logarithmic phase were harvested to prepare a cell suspension, and the density of the suspension was adjusted to 2.5×107/mL with saline. In order to create GBM model, 200 µL cell suspension was injected into the right axilla of the mice subcutaneously[14]. When the average tumor size reached 150 mm3, mice injected with HS683 cells transfected with vector were randomized into Vector and Vector + erlotinib groups, and mice injected with HS683 cells transfected with oe-LGR4 were randomized into oe-LGR4, oe-LGR4 + BAI and oe-LGR4 + erlotinib groups (n = 6). The mice in the Vector + erlotinib and oe-LGR4 + erlotinib were intraperitoneally injected with 10 mg/kg erlotinib (ERL, EGFR inhibitor) once a day[15], and the mice in the oe-LGR4 + BAI were administrated with 40 mg/kg BAI once a day[16]. In parallel, the mice in the Vector and oe-LGR4 groups received saline in the same way, all the treatments were last for 30 days. During the experiment, the tumor volume of the mice was recorded every 5 days. After finishing the last injection, the animals were euthanized, the tumor tissues were removed and weighed immediately. After that, tumor tissues were immersed in paraformaldehyde, embedded in paraffin and cut into slices for Immunohistochemistry, Terminal-deoxynucleotidyl transferase mediated nick end labeling (TUNEL) and western blot assays.
2.15 Statistical analysis
The study was analyzed with SPSS 16.0, and the data was displayed as mean ± SD. Student’s t-test was used to compare the differences between two groups, and Multiple group comparisms were made by one-way ANOVA and Tukey tests. The Kruskal-Wallis H test was applied when variances were not homogeneous. p < 0.05 was considered statistically significant.