Demographic and clinical cohort characteristics
From the original cohort, 40 patients (66.1%) were IgG seropositive for VZV and, among them, 39 had sufficient PBMCs following thawing for further downstream assays. Data from 14 children without malignancy were included as controls, resulting in a total of 53 included children. Details on diagnosis and stage of treatment are found in Table 1.
No significant differences were found between the groups with regards to demography. However, though not significant, group I had a lower median age compared to group II and III (6 vs 12 vs 12 years old). Group I consisted of an insignificantly larger proportion of females compared to group II and III (70.5% females vs 41.2% and 42.1% respectively). Finally, almost half (47.3%) of the patients in group III had undergone allo-HSCT, where two patients in the same group had also received chimeric antigen receptor (CAR) T-cell treatment.
Memory T-cell subsets are enriched whereas the naïve T-cell populations are diminished in children with lymphoid malignancies
The different T-cell populations were first examined through flow cytometry (Fig. 1A) according to diagnostic groups I-III (Fig. 1B). To illustrate the impact of age, the proportions of T-cell subsets in each group were also plotted against age as a continuous variable (Fig. 1B).
No significant differences were found in bulk CD4+ and CD8+ T-cell proportions between the groups. Both CD4+ and CD8+ naïve T-cell proportions were significantly lower in group III compared to group I (70.5% (23.2–84.5%) vs 22.3% (2.0–73.8%), p < 0.01, and 59.2% (38.4–90.6%) vs 11.8% (0.5–86.9%), p < 0.01, respectively). The X/Y graphs illustrate how this effect may partly be explained by increasing age in all groups. In this context, a more pronounced decrease in the proportion of naïve CD8+ T cells with increasing age in group III compared to the remaining groups is seen (Fig. 1B). Furthermore, the proportions of TEM/TEFF cells among CD4+ T cells were significantly lower in group I compared to group II and III (respectively as follows 5.5% (1.3–40.4%) vs 28.9% (3.2–67.6%) for group II, p < 0.05; and vs 51.0% (3.8–68.8%) for group III, p < 0.001). CD8+ TEM/TEFF proportions were also significantly lower in group I compared to group III (7.6% (1.9–24.1%) vs 43.5% (2.3–70.7%), p < 0.001). Once again, the X/Y plots reflected the impact of age, where higher proportions of TEM/TEFF populations were seen with increasing age. Nonetheless, the linear regression also suggested that group III had a more noticeable increase in CD8+ TEM/TEFF cells compared to group I. Proportions of CD4+ TCMs were significantly higher in group III compared to group I (18.0% (7.3–35.7%) vs 8.6% (4.6–29.6%), p < 0.01). The influence of age on TCM CD4+ proportions within the groups was not as clear as for the naïve and TEM/TEFF subsets (Fig. 1B). There were no differences for CD8+ TCM cell proportions between the groups, or in relation to age (Fig. 1B). Finally, no differences were seen between the groups regarding proportions of regulatory T cells (data not shown). Two subjects within group III had received CAR-T-cell therapy, which did not allow stratification of data for statistical analysis. Overall, the T-cell populations of these subjects did not deviate from the remaining individuals in group III (data not shown).
Depleted IFN- γ secretion following stimulation with SEA and VZV peptides in children treated for lymphoid malignancies
The functional status of T cells was assessed through simultaneous quantification of IL-22, IFN-γ, IL-10 and IL17-A secreting cells upon polyclonal SEA or VZV-specific stimulation (Fig. 2A). First, SFC counts for all cytokines were pooled for individuals with a complete assay including all four cytokines. The number of total SFCs differed between the groups for both polyclonal and antigen-specific activation (Fig. 2B). Group I had significantly more total SFCs upon SEA stimulation compared to group III (6245 (490–11945) vs 1080 (11–12800), p < 0.05). Upon VZV stimulation, group I and II had a similar total SFC count, whereas group III had a much lower response. This shift became significant when comparing the total SFCs following VZV stimuli in group II with group III (183 (30–3181) vs 47 (9–368), p < 0.05, Fig. 2B).
Next, the cytokine profiles upon polyclonal activation of PBMCs with SEA were generated using SFC data for donors with complete assays (Fig. 2C, upper panel). The overall cytokine responses to SEA were dominated by IFN-γ in all groups, with the remaining cytokines accounting for only 16–23% of secreting cells. However, a greater variation in cytokine response was found between the groups following stimulation with VZV peptides (Fig. 2C, lower panel). The proportions of IFN-γ secreting cells for children in groups II and III were noticeably lower compared to group I. In group III, IFN-γ SFCs only accounted for 4% of secreting cells, whereas the majority (63%) consisted of IL-22 SFCs instead (Fig. 2A). Significant differences after VZV exposure were found for the proportions of IL-22 secreting cells between group I and III (p < 0.05), for IFN-γ secreting cells between group I and III (p < 0.01) and for IL-17A secreting cells between group I and III (p < 0.01) and between group II and III (p < 0.05).
Data for each specific cytokine was also compared between the groups (Fig. 2D). No significant differences were found for IL-22. For IFN-γ, SFCs were significantly lower in group III compared to group I upon both SEA and VZV stimulation (1035 (0–12380) vs 5240 (375–9775), p < 0.05 and 2 (0–308) vs 53 (5–351), p < 0.001). In response to VZV, group III also had significantly lower ratios of IFN-γ compared to group II (2 (0–308) vs 28 (2–602), p < 0.05). For IL-10, group III had a significantly lower ratio of IL-10 SFCs compared to group I upon SEA stimulation (80 (0–1570) vs 543 (15–2730), p < 0.01), whereas no significant differences were seen following VZV stimuli (Fig. 2D). When quantifying IL-17A response, no significant differences were found between the groups upon VZV stimuli (Fig. 2D). However, upon SEA stimuli, group III had a significantly lower proportion of IL-17A SFCs compared to group I (15 (0–300) vs 165 (10–515), p < 0.01).
Finally, the volume and intensity of each spot, quantified as RSV, were used as an additional qualitative marker of cytokine secretion (Fig. 3A). Interestingly, we observed that average RSV for IFN-γ in response to VZV was markedly lower in group III; specifically, between group I and III (7810 (1407–29184) vs 462 (0–11466), p < 0.0001) as well as between group II and III (6247 (247–32453) vs 462 (0–11466), p < 0.05). Furthermore, average RSV for IL-17A was significantly lower in group III compared to that in group I (934 (0–42877) vs 8998 (0–20163), p < 0.01) upon polyclonal stimulation. No significant differences were found in RSV for IL-17A following VZV stimulation. The RSV data for IL-22 and IL-10 did not significantly differ between the study groups (Fig. 3B).