Neonatal tracheal aspirate samples
Totally 20 human neonates with BPD and 20 control counterparts who were intubated for primarily non-pulmonary diseases were recruited in this study.All BPD infants met the 2018 diagnostic criteria for BPD by the National Institute of Child Health and Human Development (NICHD)[18].The two groups of infants were matched in gender and gestational age.Tracheal aspirate (TA) samples were collected via in-line suctioning from intubated neonatal at the Intensive Care Unit (ICU).The study was approved by the Ethics Committee of the Affiliated Huaian No.1 People’s Hospital of Nanjing Medical University.
Animal experiment
The procedures of the animal study were performed under the approval of the Ethics Committee of our hospital. Neonatal mice were provided by Aniphe Biolaboratory Inc. (Jiangsu, China) and randomized into the Air,O2,O2 + sh-NC and O2 + sh-SPP1 groups (n = 6 in each group). Mice were fed by the dams in sealed plexiglass chambers at22-27°C and 55% humidity. Mice in the Air group were exposed to room air (21% O2) from postnatal day 1 to 7. Mice in the O2 group were exposed to continuous oxygen at a flow rate of 5L/min to maintain FiO2 > 95% from postnatal day 1 to 7. To explore the effects of SPP1 knockdown on hyperoxia-induced lung injury, mice from postnatal day 2 were intratracheally instilled with 1 µL normal saline containing adenovirus vector expressing sh-NC or sh-SPP1(GenePharma, Shanghai, China) at a titer of 1.58× 109PFU/L for two times with an interval of 24 h.
Lung sample collection and histological analysis
Mice were anaesthetized by intraperitoneal injection of 10 mg/kg lidocaine on postnatal day 7, tracheas were cannulated, and the lungs were excised, followed by euthanasia with CO2. The upper lungs were snap frozen in liquid nitrogen and stored at -80°C. The rest lung tissues were fixed with 4% paraformaldehyde (Beyotime, China)at 4°C overnight, embedded in paraffin, and sliced into 5-µm sections. Then the sections were dewaxed, rehydrated, and stained with hematoxylin and eosin (Beyotime, China) following the manufacturer’s protocol. The histological changes in mouse lung tissues were observed using a light microscope(Nikon, Tokyo, Japan). The radial alveolar count (RAC) and mean linear intercept (MLI) was evaluated as previously described[19].
Immunohistochemistry(IHC)
The paraffin-embedded lung tissues were dewaxed, rehydrated and processed with 3% H2O2 for 10 min at room temperature. The samples were heated for 10 min at 105°C in citric acid buffer for antigen retrieval, and subsequently blocked with normal goat serum at 37°C. Then the samples were incubated with anti-α-SMA, anti-E-Cadherin,anti-p-PI3K, anti-p-AKT, anti-p-MEK1/2, and anti-p-ERK1/2 overnight at 4°C. Next, the samples were cultured with the HRP-conjugated secondary antibody for 40 min. After color development with diaminobenzidine peroxide solution and counterstaining with hematoxylin, the images were captured using a microscope.
Glutathione (GSH) and Malondialdehyde (MDA) measurement
The GSH levels and MDA levels in transfected cells and mouse lung tissues were determined to use a total GSH assay kit (BC1175, Solarbio, China) and an MDA Assay Kit (D799762, Sangon Biotech, Shanghai, China) respectively following the manufacturer’s protocol.
Enzyme-Linked Immunosorbent Assay (ELISA)
The levels of inflammatory cytokines (TNF-α, IL-1β) in mouse lung tissue homogenates and culture supernatant of AMYFs were measured using specific commercial ELISA kits obtained from Beyotime, in accordance with the manufacturer’s instructions.
Single-cell RNA sequencing (scRNA-seq) analysis
scRNA-seq analysis was conducted by the Metware Inc. (Wuhan, China). Single-cell suspension (1000 cells/µL) was prepared as previously described[20]. Mouse lungs were perfused with PBS, minced with scissors and digested at 37°C for 35 min. After filtration with a cell strainer, the red blood cells were lysed with ACK lysis, followed by resuspending the single cells in FACS buffer with 1% FBS (Gibco, USA) and 1 mM EDTA. Next, the 10X Genomics was applied to perform the scRNA-seq analysis following the manufacturer’s guide. Briefly, the single-cell suspension was loaded in 10x Chromium, and gel beads with barcode information were mixed with individual cells and enzymes in oil droplets based on microfluidic techniques to form the single-cell gel beads-in-emulsion (GEMs), followed by dissolving the beads and lysing the cells for Barcode sequence release, which was subsequently reverse transcribed into cDNAs and amplified. Next, the production of GEMs was mixed, and library was prepared based on the standard protocol. The Illumina platform (NovaSeq 6000) was applied for RNA sequencing. The Raw data were processed using Cell Ranger software (Version 7.1.0), and the gene expression matrix of all types of cells was obtained. Data dimension reduction, clustering, analysis and differential expression analyses were then performed using Seurat (Version 4.1.1). Single R and scCATCH software were applied for cell type identification and labelling. Gene Ontology (GO) and KEGG enrichment analyses were performed to analyze the signaling pathways affected by hyperoxia using the cluster Profiler package in R software (Version 4.1.2).
Cell culture and treatment
Mouse AMYFs were isolated from wild-type C57BL/6J mice as previously described [21]. Raw264.7 cells were purchased from IMMOCELL (Xiamen, China). Cells were cultured in DMEM containing 10%fetal bovine serum (FBS,Gibco, USA) and Penicillin-Streptomycin(1%, Sigma-Aldrich) at 37°C with 5% CO2.To construct the in vitro model of BPD, cells were exposed to 95% O2 and 5% CO2 in sealed glass chambers. Cells exposed to normoxia (21% O2 and 5% CO2) were used as the control group.
Cell transfection
Short hairpin RNAs (shRNAs) targeting SPP1 (sh-SPP1) and scrambled control shRNAs (sh-NC) were designed and synthesized by GenePharma (Shanghai, China). Cells were transfected with the sh-SPP1 or sh-NC vectors using Lipofectamine 2000 (ThermoFisher Scientific) following the manufacturer’s protocol for 48 h.
Western blot
Total protein in lung tissues and fibroblasts was extracted using the RIPA lysis buffer (Beyotime, China). Next,the protein concentration was assessed using a bicinchoninic acid protein assay kit. After separation with the 8% SDS-PAGE gelsat 100 V, the samples were electro-transfer onto the PVDF membranes, followed by blocking with 5% skimmed milk. Subsequently, the membranes were incubate dover night at 4°C with the anti-SPP1, anti-Bax, anti-Bcl-2, anti-α-SMA, anti-E-Cadherin, anti-PI3K, anti-p-PI3K, anti-AKT, anti-p-AKT, anti-MEK1/2, anti-p-MEK1/2, anti-ERK1/2, anti-p-ERK1/2 with GAPDH as the internal control. Next, the membranes were washed with TBST and cultured with the HRP-conjugated secondary antibodies for 60 min at ambient temperature. All antibodies were obtained from Abcam (Shanghai, China). The target blots were developed with enhanced chemiluminescence reagents(Thermo Fisher Scientific) and quantified using the Image Lab 5.0 software (Bio-Rad).
Quantitative Real‑Time Polymerase Chain Reaction (qRT-PCR)
Total RNA was isolated from cells, mouse lung tissues and neonatal tracheal aspirate samples using Trizol (Invitrogen, USA), and then reverse transcribed into cDNA using aVic qRT Super Kit (Vicmed, Xuzhou, China). Next, PCR was conducted with the qPCR SYBR® Green Master Mix(Vicmed) following the manufacturer’s instructions.Relative expression of RNAs was quantified with the 2−ΔΔCt method, with GAPDH as the internal control.
Cell viability
Cells were grown into 96-well plates at 5000 cells/well. After incubation for 48 h, 10 µLCell Counting Kit‑8 (CCK-8) reagent (Beyotime, China) was added into each well and cultured for 3 h at 37°C, and the absorbance values at 450 nm was determined using a microplate reader (Bio-Rad, USA).
Flow cytometry analysis
Transfected cells were harvested and seeded into six-well plates at 3 × 105 cells/well. The Annexin-V-FITC/PI apoptosis kit (Absin, Shanghai, China) was applied for determining the cell apoptosis rate following the manufacturer’s protocol. Briefly, cells were washed with cold PBS and resuspended in binding buffer. Subsequently,5 µL Annexin V-FITC and 10 µL propidium iodide (PI) were added and cultured for 10 min in dark at room temperature. Finally, the apoptotic rate was detected using flow cytometry (CytoFLEX, Beckman, USA) and analyzed with CytExpert software (Beckman).
Statistical analysis
Data analysis was conducted using GraphPad Prism9. Data are shown as mean ± standard deviation (SD). The t-test was used for comparing the statistical difference of two groups, and that of multiple groups was analyzed with one-Way ANOVA followed by Tukey’s post hoc test. P < 0.05 was regarded as statistical significance.