Mice
Six weeks old C57BL/6J male mice were ordered from Charles River Research Models and Services Germany, housed in groups of four. Mice were maintained under standard conditions (12h/12h dark/light cycle, temperature 20-24 °C, humidity 45-65 %, and ad libitum access to food and water) in IVC GM 500 open cages. Following a one-week acclimation period, surgeries were conducted, and mice remained in their designated groups of four throughout the experiment. For fUS demyelination experiment, 14 LPC and 12 controls were scanned. The behaviour cohort consisted of 16 LPC against 16 control animals. Out of those, 12 LPC and 11 controls mice proceeded to be scanned using fUS to assess the remyelination effect. Additionally, three animals were used for the light sheet fluorescence microscope (LSFM). All experiments and procedures were carried out in accordance with relevant guidelines and regulations and with the approval of the responsible governmental animal ethics committee (Regierungspräsidium Baden-Württemberg, Tübingen, Germany). All methods are reported in accordance with ARRIVE guidelines (https://arriveguidelines.org) for the reporting of animal experiments.
Stereotaxic surgery and RFID-transponder implantation
1% LPC (Sigma-Aldrich, Germany) was dissolved in physiological (0.9 %) NaCl solution by sonification, before being split into aliquots and stored at -20°C prior to surgery. Seven weeks old mice were subcutaneously injected with 10 mg/kg meloxicam (Metacam®, Boehringer Ingelheim, Germany) 20 min before being anaesthetized in a chamber with 4 % isoflurane in oxygen. After shaving the scalp, animals were fixed in a stereotaxic frame (David Kopf Instruments, USA) and anaesthesia was maintained at 1.5 % isoflurane in oxygen. Heart rate, respiratory rate and blood oxygen saturation levels were monitored throughout the surgery using a biometric paw-attached modular system (PhysioSuite, Kent Scientific Corporation, USA). Temperature was maintained at approximately 37°C using a homeothermic warming pad and rectal thermometer (PhysioSuite, Kent Scientific Corporation, USA). Bupivacaine (Carbostesin, Aspen Germany GmbH, Germany) was directly injected under the scalp as a local anaesthetic. After five minutes an incision was made using a scalpel. Based on stereotaxic mouse brain atlas44, bilateral focal lesion was induced by 1% LPC injections at the following coordinates: AP = + 1.78, ML = ± 1.00, DV = - 2.75. For unilateral lesions induced in the preliminary experiment, the respective coordinates were AP = + 1.78, ML = + 1.00, DV = - 2.75. Lysolecithin was sonicated before injection for 30 min and 500 nl of the solution was injected bilaterally using a 2 µl Hamilton syringe at a rate of 100 nl/min. To prevent solution’s spread, the syringe was lowered to DL = - 2.80 to create a pocket and finally injected at DL = - 2.75. After injection, the syringe was kept at the coordinate for five minutes, then retracted to DL = - 2.70 for an additional five more minutes. Controls received physiological (0.9 %) NaCl solution. Open drilling holes were closed with Bone wax (Ethicon, Germany). After stitching the skin, an ISO compliant RFID transponder (1.25 mm x 8 mm), already prepared in a sterile syringe, was subcutaneously implanted in the lower back close to the tail after disinfecting the site. For perioperative maintenance of body fluid, mice received 0.5 mL saline before and after surgery. As postoperative treatment, Meloxicam was given on three consecutive days and animals’ health was scored for an additional two days.
fUS imaging session
Sedation in mice was induced using 4 % isoflurane in oxygen in a separate chamber. After shaving the scalps of the animals, they were fixed in a stereotactic frame (David Kopf Instruments, USA) while reducing isoflurane concentration to 1 %. Throughout the scan, oxygen level and heart rate were constantly monitored, and body temperature was maintained at 37°C by using PhysioSuite homeothermic warming equipment. Meloxicam (0.05 mg/kg) and a bolus injection of dexmedetomidine hydrochloride (0.067 mg/kg, Tocris, USA) was subcutaneously injected. While progressively reducing isoflurane concentration to 0 %, sedation maintenance was reached by constant subcutaneous dexmedetomidine infusion (0.2 mg/kg/h, 5 mL/kg/h flow rate). After application of ultrasonic gel on the scalp, ultrasound probe was positioned ~1mm above animal’s head. We used the same Iconeus One scanner provided by Iconeus (Paris, France), as described in previous publications31,45,46. The linear probe records Doppler images at 2.5 Hz frame rate. In each session, the prefrontal area of the animal was scanned by imaging a volume divided into three planes by steps of 0.2 mm. To ensure the right position of the probe, an angiographic scan of 30 coronal slices was generated (steps of 0.2 mm) in advance. Based on the Brain Positioning System47 the target area, containing bilaterally the orbital area, the prelimbic area, the infralimbic area, and the insular region was selected. Acquisition started 10 min after isoflurane concentration was decreased to 0 %. Total recording time was 60 min. After completing the imaging session, animals were directly perfused. The scan was performed either on day 7 (demyelination phase, mid of social tracking) (Fig. 1c) or day 20 post injection (remyelination phase, after social tracking) (Fig. 3a). For more detailed information about fUS processing, we refer to the study of Ionescu46.
Social arena experiment
On the fifth day post-surgery (Fig.2a), the functionality of the RFID-transponder was verified, and social arenas (RFID-assisted SocialScan) were set up as described5. Due to the construction flexibility, three nests filled with nesting material (one large and two small) were affixed to the arena. Additionally, the arena included two water bottles, food hoppers filled with weighted pellets, and bedding material, evenly distributed (Fig.2b). Mice (16 LPC animals vs. 16 controls) in groups of four were housed in the arena for a duration of 12 days, with 12 hours light/12 hours dark cycle and the dark phase beginning at 6 p.m., while their behaviour was constantly monitored. All results obtained between day 5 (starting time: 6 p.m.) to day 10 (end: 6 p.m.) post injection, were included into demyelination phase, all results between day 12 (starting time: 6.p.m.) and day 17 (end: 6 p.m.) into remyelination. The period of 48 hours in between was determined as transition phase and was therefore excluded from analysis. Upon completion of the experiment, the body weight was recorded, and the animals were returned to standard cages in their respective groups of four.
Perfusion and Luxol Fast Blue Staining
Animals were injected intraperitoneal (i.p.) with an overdose of Narcoren (Pentobarbital 10mg/kg), were transcardially perfused and their brains taken out into 4 % PFA for ~16 hours. Those brains were transferred to 30 % Sucrose and then cut into 30 µm slices on a microtome. Slices were stored in PBS containing 0.01 % Thimerosal. The formalin-fixed tissue was washed in distilled water and positioned on slides. After an incubation time of 24 hours at room temperature in Luxol Fast Blue (LFB) Solution, slices were again washed in distilled water and differentiated several times in Lithium Carbonate Solution (0.05 %). For further differentiation, sections were dipped into ethanol (EtOH) (70 %) to receive slices where grey-matter is colourless and white-matter remains blue. Afterwards, sections were washed two times in distilled water and incubated in Cresyl Echt Violet (0.1%) for 2 min. Before quickly dehydrating sections in absolute alcohol, they were washed quickly in distilled water. By using EntellanTM (Sigma-Aldrich) sections were mounted with cover slips and imaged via light microscope. Images were further processed by ImageJ, where percentage of demyelination was calculated based on ratio of black pixels in the region of interest.
Perfusion, MACS Clearing and Immunohistochemistry
In a preliminary experiment, three animals used for Light-sheet fluorescence microscopy were injected unilaterally with the respective solution. Two animals received LPC and were killed two days or 20 days post-injection, the third one was injected with Saline and killed two days after surgery. They were injected i.p. with an overdose of Narcoren, perfused with ice-cold heparinised (5 U/mL, ThermoFisher Scientific, Germany) PBS at 7mL/min for 5 minutes before receiving 4% PFA for a further 8 minutes to achieve increased tissue clarity. Whole brains were cleared according to the MACS (MXDA-based Aqueous Clearing System) clearing protocol, as this is compatible with lipophilic dyes, and allows for whole-brain rapid clearing48. Permeabilization solution, 10X Antibody Staining Solution and Clearing Solution all came pre-prepared as part of the MACS clearing kit (Miltenyi Biotec, Germany).
Brains were collected in EDTA buffer before transferral to 4% PFA for 2h. Then they were washed in PBS before incubation for 48h in 5mL MACS Permeabilization Solution under slow continuous rotation at room temperature. MBP recombinant antibody (anti-human/mouse, 1:50, REA1154, Miltenyi Biotec, Germany) was diluted in Antibody Staining Solution and brains were placed in the solution and left on a horizontal shaker for 2 weeks at 37˚C. Brains were then washed twice in Antibody Staining Solution at room temperature overnight under slow, continuous rotation, then once more for 24h.
Absolute ethanol was prepared using activated molecular sieves (3A) and a 0.22 μm filter unit before dilution to a series of 30%, 50%, 70%, and 90%, with 2% Tween® 20. 50mL tubes were filled completely with 30% ethanol/Tween® 20 solution and a brain was placed inside each and left overnight under continuous rotation at 28˚C before transferral to the higher concentration of ethanol/Tween® 20, and this was repeated with all dilutions. To ensure complete sample dehydration, the absolute (≥99.8%) ethanol solution was changed once, and the 24h incubation step repeated twice. Finally, brains were transferred to 5mL MACS Clearing Solution and incubated 24h at room temperature, under continuous rotation. Before imaging, brains were temporarily stored at room temperature in MACS imaging solution.
Light Sheet Fluorescence Microscopy
In a preliminary experiment, the cleared and immunostained whole mouse brains, injected unilaterally with the respective solution, were imaged in the horizontal plane. One brain per acquisition was mounted using two screws holding it at the frontal part and cerebellum. The brain was then immersed in the imaging chamber filled with MACS imaging solution (refraction index 1.556) of the LaVision Biotec Ultramicroscope II (Miltenyi Biotec, DE). The laser beams were aligned horizontally with the brain, using motors in the x, y, and z direction. Afterwards, an MI Plan DC57 4x objective was fitted (Miltenyi Biotec, DE) with a numerical aperture of 0.35. Images were acquired by generation of multiple z-stacks at 0.6x magnification with laser sheets from both sides at 567nm wavelength to give an overview of whole brain immunostaining. Acquired stacks were generated by ImSpector (Version 4.0.360, LaVision BioTec, Germany) and saved as TIFF images for each channel and plane separately. After stitching those stack images via the ImageJ macro BigSticher, a 3D visualization of the immunostained brains was generated.
Data processing and statistical analysis
fUS
Regional Power Doppler signal was extracted from 8 different brain regions from both hemispheres46. After cleaning the raw signal of artifacts49, the Doppler signal was filtered for sequences between 0.01-0.2 Hz applying the second-order Butterworth filter. Afterwards, functional connectivity matrices, displaying mean values for both groups, were generated, taking correlations between all time courses of selected regions. By using Fisher’s Z-transformation, Pearson’s r correlation coefficient was further processed to z-scores, allowing group-level analysis.
Social arena
The social arena was set up as described previously5. It included three attached nests to provide withdrawal and sleeping opportunities (Fig. 2a). Centre, periphery, corners, food, and water zones were fixed. Primary behavioural data were generated by the software package RFID-Assisted SocialScan. Pre-defined parameters for velocity, angle of movement, and distances5 were applied to compute non-social and social behaviours including time spent in zone, locomotion, approach, sniffing, following, contact and fighting. Individual animals were tracked by their implanted RFID-transponder. The primary behaviour data sets were extracted and processed in MATLAB. The total of all detected events in a three-hour time window on each day was used to extract numbers for all social parameters and locomotion. Then, means were calculated for each individual mouse during demyelination and remyelination phases. For all other parameters, including time spent in nest, food zone, water, centre and periphery, the total of all detected events over 24 hours was taken, followed by the mean for both recording sessions. The term 'social stay in nest' is used to denote the time spent with one or more cage mates inside nests. This duration is calculated by summing up all such events that occur within a day in a single box. The graphs in Fig. 2g and Fig. 3d display twenty values for each treatment group. These values represent the behaviour observed in the four boxes per treatment group over a period of five days during each monitoring phase.
Behavioural z-scores were calculated for individual observation (X) based on standard deviation (σ) and mean value (μ) of the control group. Those z-scores were generated as a mean value over each five days period.
The spider web plots in this study represent all analysed parameters. For behaviours such as sniffing, approaching, following, fighting, and contact, we used the values depicted in the corresponding graphs from 9 p.m. to midnight. For social stay in nest, centre, periphery, nest, food zone and water, we used the values depicted in the corresponding graphs collected over a 24-hour period. After normalising the individual values, we computed the means and displayed them including significance differences for each treatment group in the spider web plots.
Statistical analysis
All statistics were processed in GraphPad Prism or MATLAB. For fUS data, a dynamic analysis was used by applying a sliding window and the following two-sample t-tests for each time slot to achieve higher accuracy in detecting an effect46. Each t-test was corrected by False Discovery Rate (FDR) correction50. For processing the CBV signal for the fUS-example animals, a simple linear regression was performed. For the social arena task, results were displayed as mean values (± SEM) and further processed by using one-way analysis of variance (ANOVA) corrected via Bonferroni post-hoc test. Only significant differences between both groups in the specific time phase were displayed. To analyse differences in spending time in a specific area in 24 hours, an unpaired t-test was performed, as well as for LFB-staining. Significance levels were set at p < 0.05 indicated by (*), p < 0.01 (**) and p < 0.001 (***).
Methods references
44 Paxinos, G., & Franklin, K. B. J. The Mouse Brain in Stereotaxic Coordinates (Vol. 5). Academic Press ISBN: 9780128161586 (2019).
45 Grohs-Metz, G., Smausz, R., Gigg, J., Boeckers, T. & Hengerer, B. Functional ultrasound imaging of recent and remote memory recall in the associative fear neural network in mice. Behavioural Brain Research, 428, 113862 (2022). https://doi.org/10.1016/j.bbr.2022.113862
46 Ionescu, T. M., Grohs-Metz, G., & Hengerer, B. Functional ultrasound detects frequency-specific acute and delayed S-ketamine effects in the healthy mouse brain. Frontiers in Neuroscience, 17, 1177428 (2023). https://doi.org/10.3389/fnins.2023.1177428
47 Nouhoum, M. et al. A functional ultrasound brain GPS for automatic vascular-based neuronavigation. Scientific Reports, 11, 15197 (2021). https://doi.org/10.1038/s41598-021-94764-7
48 Zhu, J. et al. MACS: Rapid Aqueous Clearing System for 3D Mapping of Intact Organs. Advanced Science, 7, 1903185 (2020). https://doi.org/10.1002/advs.201903185
49 Brunner, C. et al. Whole-brain functional ultrasound imaging in awake head-fixed mice. Nature Protocols, 16, 3547–3571 (2021). https://doi.org/10.1038/s41596-021-00548-8
50 Benjamini, Y. & Hochberg, Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society, Series B (1995). https://doi.org/10.1111/j.2517-6161.1995.tb02031.x