Dasyurus hallucatus
|
microsatellites, SNPs, mtDNA
|
10 + localities
|
pop structure, diversity, Ne (temporal comparisons), selection
|
yes, in island translocations vs. mainland, and in historical vs. contemporary Ne
|
yes
|
Cardoso et al., 2009; Hohnen et al., 2016; How et al., 2009; Spencer et al., 2017; von Takach et al., 2022; Weeks et al., 2016
|
Dasyurus viverrinus
|
microsatellites
|
9 localities
|
pop structure, diversity, bottleneck, Ne
|
signature of genetic bottleneck
|
yes
|
Cardoso et al., 2014
|
Isoodon obesulus
|
microsatellites
|
10 + localities
|
pop structure, diversity, gene flow
|
not directly, but pop structure inferred to have been impacted by fragmentation
|
yes
|
Li et al., 2013, 2014, 2015, 2016; Zenger et al., 2005; Zenger & Johnston, 2001
|
Onychogalea fraenata
|
microsatellites
|
remnant pop., captive bred, translocated cohorts
|
pop structure, diversity, parentage & reproductive success
|
reduced diversity following translocation
|
yes
|
Sigg, 2006; Sigg et al., 2005
|
Sminthopsis psammophila
|
microsatellites, mtDNA
|
11 + sites, ~ 3 pop.
|
pop structure, diversity, bottleneck tests, Ne, relatedness
|
signature of genetic bottleneck
|
yes
|
McLean et al., 2014, 2018
|
Burramys parvus
|
microsatellites, mtDNA,
|
13 localities, ~ 4 pop.
|
pop structure, diversity, Ne, bottleneck, phylogeny
|
signature of genetic bottleneck
|
yes
|
Mitrovski et al., 2007; Weeks et al., 2016
|
Bettongia penicillata
|
microsatellites, mtDNA, ancient dna, SNPs
|
4 + pop., 9 localities
|
diversity, gene flow, pop. structure, phylogeny, ancient vs. modern diversity, pop viability modelling (microsatellite-based), captive breeding design, inbreeding (SNP-based)
|
yes; ancient dna comparisons
|
yes
|
Farquharson et al., 2021; Pacioni et al., 2011, 2013, 2015, 2018, 2020
|
Gymnobelideus leadbeateri
|
microsatellites, mtDNA, SNPs
|
4 + pop.
|
pop. structure, diversity (including temporal trends), Ne, inbreeding, inbreeding depression (inheritance of fitness traits), population viability simulations / genetic rescue recommendations
|
yes; e.g., temporal declines in heterozygosity
|
yes
|
Hansen et al., 2009; Hansen & Taylor, 2008; Zilko et al., 2020, 2021
|
Isoodon auratus
|
microsatellites
|
translocated founders vs. wild-born pops
|
pop. structure, diversity, bottleneck, Ne, reproductive data & carrying capacity to inform pop. viability models
|
lower diversity in captive pops
|
yes
|
Ottewell et al., 2014
|
Parantechinus apicalis
|
microsatellites, mtDNA
|
mainland + 3 island pop.
|
pop. structure, diversity, bottleneck tests, phylogeography, population viability analysis to guide translocations
|
signatures of bottlenecks and Ne decline on islands
|
yes
|
Aisya et al., 2022; Mills et al., 2004; Thavornkanlapachai et al., 2019, 2021
|
Petrogale lateralis
|
microsatellites, mtDNA
|
4 + wild, plus various captive
|
pop. structure & dispersal, diversity, parentage, taxonomy, population viability analyses
|
various findings, but evidence of recent mainland bottlenecks and long-term low diversity on islands
|
yes
|
Eldridge et al., 2004; Eldridge & Potter, 2019; Nilsson et al., 2023; Potter et al., 2017; Ruykys & Lancaster, 2015; West et al., 2018
|
Perameles bougainville
|
microsatellites, mtDNA
|
5 islands (both natural + introduced pop.)
|
pop. structure, diversity, bottleneck tests
|
not recently? long-term low diversity followed by captive mixing = higher diversity
|
yes?
|
Smith & Hughes, 2008
|
Phascolarctos cinereus
|
microsatellites, mtDNA, SNPs, MHC, WGS, transcriptome
|
91 + locs, 5 main clusters
|
many & various
|
signature of genetic bottleneck
|
yes, in some populations
|
Cheng et al., 2018; Cristescu et al., 2010; Hobbs et al., 2014; Johnson et al., 2018; Kjeldsen et al., 2019; Lott et al., 2022
|
Dasyurus maculatus
|
microsatellite,
|
12 + localities
|
pop. structure, diversity, historical phylogeography
|
maybe
|
maybe
|
Firestone et al., 1999; Ruibal et al., 2009, 2010; Weeks et al., 2016
|
Lagorchestes hirsutus
|
microsatellites, mtDNA,
|
3 pop.
|
pop. structure, diversity, phylogeny
|
not directly reported
|
maybe
|
Eldridge et al., 2004; Eldridge & Potter, 2019
|
Petauroides volans
|
microsatellites
|
11 sites
|
pop. structure & connectivity, parentage
|
weak evidence
|
maybe
|
Taylor et al., 2007
|
Potorous gilbertii
|
microsatellites, mtDNA
|
1 extant pop., plus captive
|
pop. structure, diversity, bottleneck tests, Ne
|
yes, signature of genetic bottleneck
|
maybe
|
Sinclair et al., 2002
|
Sarcophilus harrisii
|
microsatellites, mtDNA, SNPs, MHC, WGS, transcriptome …
|
10 + localities
|
many & various, including population demography
|
yes, genomic signatures of repeated bottlenecks
|
yes
|
Brandies et al., 2019; Y. Cheng et al., 2012; Y. Y. Cheng & Belov, 2012; Cui et al., 2015; Deakin & Belov, 2012; Farquharson et al., 2022; Grueber et al., 2021; Jones et al., 2003, 2004; Miller et al., 2011; Murchison et al., 2012; Silver et al., 2021; Stahlke et al., 2021; Ujvari et al., 2014; Woods et al., 2018; Wright et al., 2019
|
Bettongia tropica
|
microsatellites
|
1 pop.
|
mating systems; relatedness and indiv dispersal
|
not directly reported
|
no
|
Pope et al., 2012
|
Lasiorhinus krefftii
|
microsatellites
|
1 pop.
|
individual relatedness and dispersal
|
not directly reported
|
no
|
Taylor et al., 1997
|
Macropus eugenii
|
microsatellites
|
1 island, 1 mainland
|
pop. structure, diversity, het excess (for recent bottleneck)
|
not detected
|
no
|
Eldridge et al., 2004
|
Myrmecobius fasciatus
|
microsatellites
|
1 pop.
|
parentage, diversity
|
not directly reported
|
no
|
Spencer et al., 2020
|
Petrogale penicillata
|
microsatellites, mtDNA, karyotyping, SNPs, exon capture
|
1+?
|
diversity, phylogeny, inter-species structure, introgression & gene flow
|
not directly reported
|
no
|
Kleemann et al., 2021; Potter et al., 2017, 2022
|