Human Cirrhosis
The current cross-sectional study was performed on 120 cirrhotic patients who visited the outpatient unit or were admitted to the Departments of Medical Gastroenterology and Surgical Gastroenterology wards, Jawaharlal Institute of Post Graduate Medical Education and Research (JIPMER) between 2016 and 2018. All cirrhotic patients (cases) and healthy subjects (controls) signed written informed consent before they were enrolled. All the study participants were aware of concerning the background and procedure of this study. In addition, the study protocol was approved by the JIPMER Ethics Committee for Human Studies (JIP/IEC/2016/30/971) and was conducted in accordance with the revised (1983) Ethical Guidelines of the Helsinki Declaration.
Study Population
Both males and females aged 18–60 years were recruited and were diagnosed as cirrhosis (both compensated and decompensated n = 60, respectively) based on the combination of clinical, biochemical, endoscopic and/or ultrasound findings or a liver biopsy, according to recent EASL guidelines [3]. Sixty age and gender-matched healthy volunteers were included as controls (n = 60) based on standard hepatic function tests and without a history of any recent infections or other co-morbidities. All patient's demographic and clinical data were collected at admission. Furthermore, 8ml of blood samples collected in heparinized/EDTA-coated tubes were centrifuged (3000 rpm for 10 minutes), and the plasma separated was stored at -80oC until analysis. Blood samples from healthy volunteers in the control group were collected and processed under the same conditions as the patient samples. All the biochemical parameters (liver and kidney function tests) were measured in the plasma samples using an autoanalyzer (Beckman Coulter, Inc. AU 5000, USA). In addition, liver specimens obtained during surgery of cirrhotic patients were fixed in formalin for histological evaluation, immunohistochemistry and immunofluorescence findings. Pieces of liver specimens were also snap-frozen in liquid nitrogen and stored at -80oC for further analysis.
ELISA
As previously described [10], Nostrin and cGMP levels in both plasma and liver tissue supernatants were assessed by employing human ELISA kits (Ray Biotech, USA.). Furthermore, circulating cytokine levels were measured in plasma using human ELISA kits (TNFα, Ray Biotech, USA; IL-1β and IL-10, Diaclone, France.), according to manufacturer’s instructions.
Histopathological and immunohistochemistry (IHC) analysis
Hematoxylin-eosin (H&E) and IHC staining methods were used to stain the liver, which was prefixed with 10% normal buffered formalin. 5µm thick sections were cut from paraffin-embedded liver slices, deparaffinated and rehydrated with respective xylene and ethanol, and mounted onto silane-coated slides using an automated microtome (Leica). H&E staining was performed in tissue-embedded slides to assess liver parenchyma, as described earlier [10]. EVOS cell imaging system (Invitrogen, UK) was used to acquire the images. For IHC, silane-coated slides were treated with antigen retrieval and 3% H2O2 solutions to inhibit endogenous peroxidase activity. Tissues were incubated with 5% goat serum for 1 hr and incubated overnight at 4oC with primary antibodies against rabbit polyclonal anti-human Nostrin (1:100; cat: sc-134803, Santacruz) and rabbit polyclonal anti- human eNOS (1:100; cat: PA-1712-1, Bosterbio). Sections were washed with TBS-tween-20 and incubated for 30 minutes at RT with universal secondary antibody (Cat: MP-7500, Vector lab). Antibody binding was revealed using hydrogen peroxide as substrate and ImPACT diaminobenzidine (DAB) as chromogen (Cat: SK-4105, Vector lab). Hematoxylin was used as a counterstain, and then the slides were mounted with Histamount (Invitrogen) and analyzed using the EVOS-FLC imaging system (Invitrogen, UK). For negative control, tissue slides were omitted with primary antibody and incubated only with the corresponding secondary antibody as described above.
Immunofluorescence
4% paraformaldehyde-fixed liver tissues were sectioned and mounted on silane-coated slides. Following antigen retrieval treatment, the tissue slides were blocked with appropriate normal blocking serum and then incubated with specific primary antibody against anti-human Nostrin for 1hr (1:100 dilution, respectively). For double immunostaining, sections were treated with anti-human Nostrin and anti-human eNOS antibodies. The sections were washed with TBST and then incubated with fluorescence-tagged secondary antibody such as goat anti-rabbit IgG (Alexa Fluor 488, Cat: A11034, Thermo Fisher Scientific, USA) for 1 hour in the dark. After washing, nuclear counterstaining was done using DAPI (1 µg/ml, 1 minute) (Cat: D9542, Sigma) and mounted with a coverslip using Histamount (Invitrogen) mounting medium. For negative control, tissue slides were omitted with primary antibody and incubated only with the corresponding secondary antibody as described above.
PCR
As previously described [10], total cellular RNA was extracted from frozen human liver tissues using the RNeasy mini Kit (catalogue: 74104, Qiagen, Germany). RNA purity and integrity were assessed by agarose gel electrophoresis after RNA quantification using the NanoDrop system (Thermo Scientific, USA). PrimeScript RT Reagent (catalogue: RR037A, Takara) was used for cDNA synthesis from quantified RNA samples. The primers specific for each gene including Nostrin (F: 5'-GGCAGAGCAATCCAGGTTC-3'; R: 5'-AGGCCTTGCAAAGTCTGCT-3'), eNOS (F: 5'-CGGCATCACCAGGAAGAAGA-3' R: 5'-CATGAGCGAGGCGGAGAT-3', and a housekeeping gene, glyceraldehyde-3phopshate dehydrogenase (GAPDH) (F: 5'-TGAAGGTCGGAGTCAACGGATTTGGT-3' R5'-CATGTGGGCCATGAGGTCCACCAC-3') were designed using the PrimerQuest tool (IDT) and obtained from Integrated DNA Technologies. Gene expression was analysed using CFX96 qPCR analysis software (Biorad Laboratories, USA). The same samples were tested in triplicates. Melting curve analysis was performed to verify the specificity of the PCR product. The target mRNAs were normalised with GAPDH, and their relative quantitation was analysed using the comparative Ct method.
Western blotting
Western blot analysis was performed on protein extraction obtained from liver homogenates, as described earlier [10]. Following protein estimation by employing an improved Bradford assay kit (Cat: 23236, Pierce™, Thermo Fischer Scientific, UK), liver protein samples were loaded onto 4–12% NuPAGE Bis-Tris protein Gels, then transferred onto polyvinylidene difluoride
(PVDF) membranes (Invitrogen, UK). Membranes were blocked in 5% non-fat dry milk powder (Sigma-Aldrich, Merck, India) diluted in TBST for 1hr at RT. The blots were incubated overnight with different primary antibodies, including rabbit anti-human NOSTRIN (1:1000; Santacruz, USA), mouse anti-human eNOS, iNOS and p-eNOS (Ser1177) (1:500, 1:10,000 and 1:1000 respectively; BD transduction laboratories, CA and Sigma, USA), and NFkB, (1:1000; Cell signaling, UK), and after being extensively washed with TBST, incubated with respective horseradish peroxidase (HRP) secondary antibodies diluted 1:1000 for 1 hr at RT. The blots were washed again, and the bands were visualized using an enhanced ECL detection kit (Clarity™ Western ECL substrate). ChemiDoc MP System (Bio-Rad, Hercules, CA, USA) was used for image acquisition and quantification. Rabbit anti-β-actin antibody was used to assess the loading accuracy after stripping the blots with Western blot stripping buffer (Thermo Fisher, USA).
Statistics
Data were presented as mean ± SEM. The Mann-Whitney U test or ANOVA, followed by the Kruskal-Wallis multiple comparison test were performed for significant differences between control and disease groups; p-value < 0.05 was defined to denote statistical significance. The correlation coefficient (Rho) was calculated using Spearman’s correlation. ROC curve analysis was done using sensitivity and specificity for possible cut-off values for plasma Nostrin levels. Software used included Microsoft Excel 2021, Version 16.8 (Microsoft Corp., Redmond, WA) and GraphPad Prism 10.0 (GraphPad Software, Inc., San Diego, CA).