Patient sample
OC tissues and adjacent tissues were collected from 64 OC patients in Xi'an Jiaotong University Second Affiliated Hospital from January 2015 to January 2017. The patients were all female, aged 35–62 years, with an average age of 48.13 ± 5.98 years. The pathological diagnosis was based on the histology or biopsy of tumor specimens and examined by experienced pathologists. OC tissues and adjacent tissues were stored in liquid nitrogen. Since 2015, serum samples of 21 patients with non-metastatic OC, 43 patients with metastatic OC and 20 healthy controls were extracted.
Cell culture
Ovarian epithelial cells (IOSE 80) were purchased from BeNa Culture Collection (Suzhou, Jiangsu, China). OC cells [ES-2 (ATCC® CRL-1978), SKOV3 (ATCC® HTB-77) and Caov3 (ATCC® HTB-75)] and 293T cell line (ATCC® CRL-1573) were obtained from ATCC (Manassas, Virginia, USA). All cell lines received detection of Mycoplasma and STR. IOSE 80 cells were cultured in MCDB105/Medium199 complete medium; OC cells were incubated in RPMI 1640 medium containing 10% fetal bovine serum (FBS), 100 IU/mL penicillin and 100 µg/mL streptomycin; 293T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) with high glucose at 37℃ with 5% CO2. After detached with 0.01% trypsin every 2–3 days, the cells were passaged routinely.
Isolation of EVs
For the treatment of cell supernatant, FBS (30067334, Thermo Fisher Scientific Inc., Waltham, MA, USA) was centrifuged at 4℃ and 1 × 106 g for 16 h (Beckman Coulter Avanti J-30I, Chaska, MN, USA) to deplete the effect of its own EVs. SKOV3 cells were cultured for 48–72 h. Then the medium was collected and the EVs were isolated by ultracentrifugation. For the treatment of serum samples, the blood was collected from blood vessels (anticoagulants must not be added to the collected serum samples), and left standing for 30 min. After standing at 4℃ for 3–4 h, blood clots could be seen. After the samples were centrifuged at 4℃ for 10 min at 1900 × g, light yellow serum could be seen. Then the supernatant was collected and centrifuged at 4℃ for 10 min at 3000 × g.
EVs were extracted by ultracentrifugation. The cell medium or treated serum was centrifuged at 300 g for 10 min, 2000 g for 15 min and 12000 g for 30 min, and then passed through the 22.0 µm filter. The supernatant was further centrifuged at 4℃ for 2 h at 1 × 106 g, washed in phosphate-buffered saline (PBS), and centrifuged for the second time under the same conditions. Thereafter, the precipitate was resuspended in 100 mL PBS and kept at -80℃ for standby or immediate use [15].
Identification of EVs
For the Nanoparticle tracking analysis (NTA) [15], each sample was tested three times (30 s/time). After the video recording was completed, the brightness was adjusted to the appropriate value, and the resolution threshold was less than 5/screen from the screen to the blue dot (false positive). The trajectory of each EVs in the screen was analyzed using the software. According to the principle of Brownian motion, the diameter and concentration of EVs were automatically converted. The original concentration was converted according to the dilution ratio.
For the observation under transmission electron microscope (TEM) [16], 20 µL ultracentrifuged fresh EVs samples were loaded into a carbon-coated copper electron microscope grid for 2 min and negatively stained with phosphotungstic acid solution (12501-23-4, Sigma-Aldrich, Merck KGaA, Darmstadt, Germany) for 5 min. The grid was washed with PBS 3 times to remove the excess phosphotungstic acid solution, and then kept semi-dried in filter paper. The image was observed under TEM (H7650, Hitachi, Tokyo, Japan) at 80kV.
The expressions of EVs specific surface markers Alix (rabbit-anti, ab76608, Abcam, Cambridge, MA, USA), CD9 (rabbit-anti, ab236630, 1:1000, Abcam), CD81 (rabbit-anti, ab109201, 1:1000, Abcam) and Calnexin (rabbit-anti, ab92573, 1:10000, Abcam) were detected.
Cell uptake of EVs
The purified EVs were labeled with green fluorescent PKH-67 (Sigma-Aldrich). EVs were resuspended in 1 mL Diluent C solution, and 4 µL PKH67 ethanol dye solution was added into 1 mL Diluent C to prepare into 4 × 10− 6 M dye solution. Then, 1 mL EVs suspension was mixed with PKH-67 for 5 min, and the staining was terminated by incubation with 2 mL 1% EVs-free FBS for 1 min. The labeled EVs were centrifuged at 100000 × g for 2 h. The samples were collected and enriched in the sucrose at the density of 1.13–1.19 g/mL, and then the labeled EVs were collected [17]. The PKH-67-labeled EVs were incubated with OC cells at 37℃ for 12 h. The cells were fixed with 4% paraformaldehyde, rinsed with PBS, and stained with DAPI (D9542, Sigma-Aldrich).
For the EVs experiment of receptor OC cells (ES-2 and Caov3) uptaking cy3-miR-590-3p carried by SKOV3 cells, SKOV3 cells were delivered with cy3-miR-590-3p (GenePharma, Shanghai, China) in serum-free medium using Lipo3000 kit (L3000001, Invitrogen Inc., Carlsbad, CA, USA). After 6 h, the cells were placed in 10% serum medium free of EVs for 48 h-incubation. Afterwards, the supernatant was collected. EVs were isolated in line with the above-mentioned ultracentrifugation steps, and resuspended in PBS and added into OC cells. Likewise, the cells were fixed with 4% paraformaldehyde and rinsed with PBS. The cytoskeleton was labeled with Phalloidin-iFluor 488 reagent (1:1000, ab176753, Abcam) for 30 min, and the nuclei were stained with DAPI (D9542, Sigma-Aldrich). The uptake of EVs and EVs-miR-590-3p in OC cells was observed under fluorescence microscope (ECLIPSE E800, Nikon, Tokyo, Japan).
Binding of miR-590-3p to EVs
RNase experiment was performed to confirm whether miR was bound to EV surface or packaged in EVs. Briefly, EVs were resuspended with PBS and cultured with 20 µg/µL RNAse (Purelink RNase A, Life Technologies, Gaithersburg, MD, USA) at 37℃ for 20 min. The integrity of vesicle membrane was disrupted by Triton X-100 treatment, using radio-immunoprecipitation assay (RIPA) buffer for 20 min followed by the above RNase treatment. After RNase A incubation, the reaction was inhibited by lysis buffer and RNA was isolated.
Cell transfection
The lentiviral vectors encoding miR-590-3p or NC and overexpression of CPEB3 or CPEB3 NC were designed and produced by Genechem (Shanghai, China). The SKOV3 cells were infected with lentivirus at 20 times multiplicity of infection and then selected with 1 µg/mL puromycin for 3 days.
miR-590-3p mimic, miR-590-3p mimic-NC, miR-590-3p inhibitor, inhibitor-NC were produced by Genepharma (Shanghai, China). ES-2 and CAOV3 cells in logarithmic growth phase were seeded into 6-well plates (1 × 105 cells/well). The cells reached 75% confluence after 24 h of conventional culture. The cells were transfected using Lipofectamine 2000. Briefly, 250 µL serum-free Opti-MEM (51985042, GIBCO, Grand Island, NY, USA) was used to dilute 25 pmol of mimic or inhibitor and 10 µL Lipofectamin 2000, respectively. After standing for 5 min, the two liquids were evenly mixed together. After standing for 20 min, the mixture was added into the cell culture well. The transfected cells underwent 48 h-culture at 37℃ with 5% CO2 for subsequent experiments.
Cell counting kit-8 (CCK-8) assay
The cell viability was measured using CCK-8 assay kit (Dojindo, Kyushu Island, Japan). The treated cells were seeded into 96-well plate (5 × 103 cells/well). On days 1st, 2rd, 3nd, 4th and 5th day, 10 µL CCK8 solution and 100 µL fresh medium were supplemented into each well and incubated at 37℃ for 1 h. The absorbance at 450 nm was measured by microplate reader (Bio-Rad 680, Bio-Rad, Hercules, CA, USA). The cell proliferation activity was expressed by subtracting the absorbance of the blank well from the absorbance of the experimental well.
Transwell assay
The cell migration and invasion were measured using Transwell assay. The apical chamber of the bottom membrane was coated with Matrigel (BD Bioscience, San Jose, CA, USA) (The matrigel was polymerized into gel at 37℃ for 30min, and the substrate membrane was hydrated before use) to conduct invasion assay. The migration assay was conducted without coating Matrigel. The cells were cultured in serum-free medium for 12 h, harvested and resuspended in serum-free medium (1 × 105 cells/mL). The basolateral chamber was added with the medium containing 10% FBS. Transwell chamber was supplemented with 100 µL cell suspension and subjected to 24 h-incubation at 37℃. The cells were fixed with 100% methanol and stained with 1% toluidine blue (Sigma-Aldrich). Five visual fields were selected, and the stained cells were observed under the inverted optical microscope (Axio Observer3, CarlZeiss, Germany).
Reverse transcription quantitative polymerase chain reaction (RT-qPCR)
Total RNA was extracted from cells using Trizol reagent (Invitrogen), and 1 µg total RNA was reverse transcribed into cDNA using Revert Aid first-strand cDNA synthesis kit (Fermentas, Life Sciences, Canada). Then, RT-qPCR analysis was performed using SYBR Premix ExTaq™ II in an ABI PRISM® 7900HT system (Takara, Kyoto, Japan). For miR analysis: EVs-miR was isolated using SeraMir EVssome RNA purification kit (System Biosciences, Mountain View, CA, USA). miR was extracted from cells using PureLink™miRNA extraction kit and synthetized into cDNA using TaqMan microRNA assay kit (Applied Biosystems, Foster City, CA, USA). The universal reverse primers provided by FastStart Universal SYBR Green Master Mix (Roche, Mannheim GmbH, Penzberg, Germany) and TaqMan microRNA assay kit were used for RT-qPCR. GAPDH and U6 acted as the internal reference. In addition, miR level in culture media, serum and EVs was normalized to cel-miR-39 with an exogenous reference. The relative expression of genes was calculated by 2−△△CT method. The primers are shown in Table 1. Each well had 3 duplicated wells.
Table 1
Primer sequence for RT-qPCR
Gene | Primer sequence |
Hsa-miR-590-3p | F: 5’- GCGTAATTTTATGTATAAGC − 3’ |
Cel-miR-39 | F: 5’-GGTCACCGGGTGTAAATCAGCTTG − 3’ |
Human U6 snRNA | F: 5’-CTCGCTTCGGCAGCACA-3’ |
Human CPEB3 | F: 5’- GAAAGGTAAACACTACCCTCCCA − 3’ |
R: 5’- CCAGGAAGGCATTGTTAAGTGC − 3’ |
Human GAPDH | F: 5’- GGTGAAGGTCGGTGTGAACGGATTTGG − 3’ |
R: 5’- TGTGCCGTTGAATTTGCCGTGAGTGG − 3’ |
Western blotting
The tissues and cells were lysed in enhanced RIPA lysate containing protease inhibitor (Boster Biological Technology Co., Ltd, Wuhan, Hubei, China). Then the protein concentration was tested using bicinchoninic acid (BCA) assay kit (Boster Biological Technology). The protein was separated by 10% SDS-PAGE, and then transferred to PVDF membranes (Merck Millipore, Billerica, MA, USA). The membranes were blocked with 5% skim milk for 2 h to block the nonspecific binding and cultured with the primary antibodies overnight at 4℃. Following rinsing with tris-buffered saline-tween (TBST) buffer three times, the membranes were incubated with horseradish peroxidase labeled secondary antibody at 37℃ for 1 h. Following TBST washes, the bands were developed and visualized using enhanced chemiluminesence reagent (Thermo Fisher). ChemiDoc XRS Plus luminescent image analyzer (Bio-Rad) was used fro imaging and photographing. The gray value of each band was quantified using Image J (National Institutes of Health Inc., Bethesda, MD, USA), with GAPDH as the internal reference. The antibodies were as follows: CPEB3 (rabbit-anti, ab10833, 1:1000, Abcam), GAPDH (ab8245, Abcam), rabbit secondary antibody (ab97051, 1:10000, Abcam).
Dual-luciferase reporter gene assay
CPEB3 3'UTR gene fragment was synthesized and introduced into pGL3-control (Promega, Madison, Wisconsin, USA) by endonuclease site. Complementary mutant (MUT) sites of seed sequence were designed on CPEB3 wild type (WT). The target fragment was inserted into pGL3-control vector by restriction endonuclease cleavage and T4 DNA ligase. The luciferase reporter plasmids WT and MUT were co-transfected into 293T cells with miR-590-3p mimic or miR-590-3p mimic-NC. After 48 h, the cells were lysed. The luciferase activity was detected on Luminometer TD-20/20 (E5311, Promeg) using dual-luciferase reporter assay system kit (Promega). Each experiment was repeated 3 times independently.
RNA immunoprecipitation (RIP)
RIP was conducted using EZ-Magna RIP RNA binding protein immunoprecipitation kit (Millipore). Briefly, the cells were collected and lysed in the frozen lysis buffer supplemented with protease inhibitor, RNase inhibitor and 1 mM phenylmethylsulfonyl fluoride. The lysis buffer was centrifuged at 14000 g for 15 min, and 50°L lysis buffer was stored as input. The protein extract (1 mg) was incubated with rabbit IgG (Proteintech, Rosemont, IL, USA) at 4℃ overnight and then treated with 30°L A/G protein magnetic beads at 4 ℃ for 4 h. Afterwards, the beads were washed 5 times, and the miR of co-immunoprecipitation was extracted using mirVana PARIS kit (Ambion, Austin, Texas, USA). The extracted miR was reverse transcribed and analyzed by real-time PCR. In addition, miR folding enrichment in immunoprecipitation samples was presented in the form of percentage input, with IgG as isotype control.
Animal experiment
Healthy BALB/c nude mice aged 4–6 weeks were purchased from Institute of Materia Medica, Chinese Academy of Medical Science (Beijing, China). Nude mice were raised in specific pathogen-free animal laboratory in different cages at 22–25℃, with humidity of 60%-65%, and maintained in light/dark cycle for 12 h. Water and food were provided ad libitum. All the mice were fed adaptively for 1 week, and the health condition was evaluated before experiment.
In the subcutaneous tumorigenesis experiment, SKOV3 cells had the highest tumorigenic rate. Briefly, 0.2 mL SKOV3 cell suspension (1 × 107 cells/mL) was injected subcutaneously into the right subcutaneous tissue of each mouse. Eight days after injection, the mice were assigned into five groups: control group (injected with PBS via tail vein), SKOV3-EVs group (injected with 10 µg SKOV3 cell-derived EVs via tail vein), EVs-miR-590-3p group (injected with 10 µg miR-590-3p lentivirus-infected SKOV3-EVs), EVs-miR-590-3p + oe-NC group (injected with 10 µg miR-590-3p lentivirus-infected SKOV3-EVs and oe-NC via tail vein), and EVs-miR-590-3p + oe-CPEB3 group (injected with 10 µg miR-590-3p lentivirus-infected SKOV3-EVs and oe-CPEB3 via tail vein), with 8 mice in each group. The injection site was observed regularly and the tumor volume was recorded. Vernier caliper was used to measure the long diameter and short diameter of each tumor mass as variables "A" and "B". The tumor volume was calculated as V = AB2/2 [18]. After 5 weeks, the mice were euthanized with ≥ 100 mg/kg pentobarbital sodium. The tumor weight was measured, and the expressions of miR-590-3p and CPEB3 were detected.
Lung [19] and liver metastasis [20] models were established by tail vein injection or intrasplenic injection. For the tail vein lung metastasis experiment, 2 × 106 SKOV3 cells were injected into the nude mice via tail vein. For the intrasplenic metastasis experiment, nude mice were anesthetized with pentobarbital sodium (35–40 mg/kg), and the spleen was resected by laparotomy. Then 2 × 106 SKOV3 cells were injected into the spleen capsule of nude mice. After 14 days of SKOV3 cell injection, nude mice were grouped (8 mice in each group) and injected with 10 µg EVs or equivalent amount of oe-CPEB3 lentivirus twice a week for 1 month. Then the nude mice were euthanized and lung tissues and livers were taken for examination.
Hematoxylin and eosin (HE) staining
The lung and liver tissues of nude mice were fixed with formalin, embedded in paraffin and sliced (4 µm). The tissue sections were stained using HE staining kit (Beyotime Biotechnology Co., Ltd, Shanghai, China) to observed the metastasis of lung and liver. The stained sections were observed under the inverted optical microscope (Axio Observer3).
Statistical analysis
Data analysis was performed using the SPSS 21.0 (IBM Corp., Armonk, NY, USA). Data are described as mean ± standard deviation. Paired t-test was adopted to analyze the data between cancer tissues and adjacent tissues; unpaired t-test was used to analyzed the data between the other two groups. One-way ANOVA was adopted to analyze the data among multiple groups; two-way ANOVA was used to analyzed the cell viability at different times, and repeated measurement ANOVA was used to compare the tumor volume at different time points. Pearson correlation analysis was utilized to estimate the correlation between CPEB3 and miR-590-3p. The p < 0.05 meant a statistical difference.