Animals
Sprague-Dawley male rats (250–300 g) were supplied by the Animal Center of Air Force Medical University, Xi’an Shaanxi Province, People’s Republic of China. The animal experimental protocol was approved by the Animal Protection and Utilization Committee of Air Force Military Medical University. The rats were housed under standard conditions (temperature: 22–25 °C, relative humidity: 45–65%, and 12-h light to dark cycle, with food and water ad libitum). SD rats were randomly divided into three groups: the sham control group, vehicle group and PBM group.
SCI model
Spinal cord injury procedures were established in compliance with the modified bilateral spinal cord clamp model we described before[28]. Briefly, rats were anaesthetized with an intraperitoneal injection of pentobarbital sodium (50 mg/kg). Midline skin incisions were made, the T10 spinous processes were exposed, and a laminectomy was performed at T10. Compression was conducted by placing forceps (Fine Science Tools, Heidelberg, Germany) lateral to the exposed spinal cord. Complete closure was performed with modification by adding a metal spacer between the blades to obtain a gap of 0.5 mm for 40 s. The forceps were removed, and the bleeding was stopped. Then, the muscles and skin were sutured. Throughout the experiment, the rats were placed on a blanket and maintained at a constant temperature of approximately 37 °C. A dose of antibiotic was given by intraperitoneal injection for 5 days after the operation. Urinary retention was relieved by twice-daily bladder expression until the recovery of spontaneous micturition. The sham-operated rats underwent every surgical step except for spinal cord compression, and the laser fibre was implanted beside the lamina in the vehicle group and PBM group.
Laser irradiation
The parameters of the laser irradiation were set according to previous research[28, 30]. Rats were slightly anaesthetized and put into a warm cage, and a continuous 810 nm diode laser (MW-GX-808, Lei Shi Optoelectronics Co., Ltd. Changchun, China, 810 nm wavelength, 150 mW output power) was used in the embedded laser fibre focused on the SCI site. The first irradiation was carried out immediately after injury, and laser treatment was continued for 60 minutes per rat daily for a total of two consecutive weeks in the PBM group. Rats in the sham and vehicle groups were treated identically except for the laser application.
Functional assessment
The Basso-Beattie-Bresnahan (BBB) scale and the Louisville Swimming Scale (LSS) were used to evaluate locomotor function as previously described[31, 32]. The BBB score was evaluated before the operation and 1, 3, 5, 7, 10, 14, 21 and 28 days after injury, and the average score was used in the assessment. Rats are trained to swim from one edge of the glass tank to the other for the swimming test. The LSS was used to assess the movement and alternation of the hind limbs, and the dependence on the forelimb, body angle and trunk instability were evaluated. Each animal was tested twice. Two observers who were blind to the animal grouping evaluated each animal independently.
RNA‐seq analysis
The RNA of the total sample was separated and purified by TRIzol (Invitrogen, Carlsbad, CA, USA) according to the operating protocol provided by the manufacturer. Then, a NanoDrop ND-1000 (NanoDrop, Wilmington, DE, USA) was used to determine the amount and purity of total RNA. The integrity of the RNA was tested by an Agilent 2100, with RIN number >7.0 as the qualified standard, and agarose gel electrophoresis was used for verification. Five micrograms of total RNA was removed, and a Ribo-Zero™ rRNA Removal Kit (Illumina, San Diego, USA) was used to capture and remove ribosomal RNA according to the standard operating procedures. Then, the linear RNA was removed by the action of RNase R (Epicentre Inc, Madison, WI, USA), and the remaining RNA was fragmented with divalent cations at high temperature. Reverse transcriptase was used to synthesize cDNA from the fragmented RNA. Then, E. coli DNA polymerase I and RNase H were used for two-strand synthesis to convert these double-stranded DNA and RNA complexes into double-stranded DNA. At the same time, DUTP was incorporated into the two strands to blunt the ends of the double-stranded DNA. Then, an A base was added at each end so that the DNA could be connected to a linker with a T base at the end, and magnetic beads were used to screen and purify by fragment size. The two strands were digested with UDG, and then PCR was used to form a library with a fragment size of 300 bp (±50 bp). Finally, we used an Illumina HiSeq 4000 (LC Bio, China) to perform paired-end sequencing according to the standard operation.
Tissue processing
Rats were perfused with paraformaldehyde in phosphate buffer (4%, 4 °C, pH 7.4), and a 2 cm long spinal cord segment was carefully dissected from the centre of the injury site and placed in the same fixation solution within 4~6 h. Then, the transferred cord was placed in 25% glucose phosphate buffer at 4 °C until it sank. Afterward, 10 μm serial sagittal sections were cut with a cryostat (CM1900, Leica, Germany) and carefully mounted on slides for 10 cyclic sets.
Immunofluorescence
Sections were rinsed three times in phosphate-buffered saline (PBS) for 5 minutes each. Then, the sections were blocked with 1% donkey serum containing 0.3% Triton X-100 at room temperature for 30 minutes. The sections were then incubated at 4 °C with the primary antibodies overnight and with appropriate secondary antibodies at 37 °C for 2 h. Finally, to label the nuclei, the sections were counterstained with 4′,6-diamidino-2-phenylindole (DAPI). Images were taken under a fluorescence microscope (BX51, Olympus, Tokyo, Japan). The following primary antibodies were used: anti-C3 (1:300, Abcam, ab200999), anti-Lcn2 (1:200, Abcam, ab63929), anti-GFAP (1:400, ab4674, Abcam), anti-Iba1 (1:500, Abcam, ab178846), anti-iNOS (1:500, Abcam, ab49999), and anti-NeuN (1:100, Abcam, ab177487).
TUNEL staining
The TUNEL kit was purchased from Beyotime (Nanjing, China), and the experimental process was performed in accordance with the manufacturer's protocol. The proportion of TUNEL-positive cells was assessed. Fluorescence images were captured with a BX51 fluorescence microscope (Olympus, Tokyo, Japan).
Primary cell cultures
The cerebral cortex of 1~3-day-old rats was carefully dissected into slices 0.5~1 mm thick. The slices were placed in 0.125% trypsin EDTA solution (Thermo Fisher Science) and shaken gently for 20 minutes. The digested tissue was centrifuged at 300 × g for 5 minutes and resuspended in DMEM/F12 (Gibco). After filtration with 100m nylon mesh, the final single-cell suspension was cultured in a T75 culture flask that was precoated with poly-L-lysine (Sigma Aldrich). The medium was changed the next day and then every three days. After culturing in vitro for 12~14 days, the culture flasks were shaken at 200 rpm for 2 h, and then mature microglia were obtained from the supernatant. The remaining astrocytes were digested with trypsin and re-cultured for follow-up experiments.
Cell treatment
Primary microglia were induced to adopt the M1 phenotype in culture medium with 10% foetal bovine serum (FBS), 1% DMEM, 1μg/ml lipopolysaccharide (Sigma Aldrich) and 20 ng/ml IFN-gamma (IFN-γ) (Sigma Aldrich) for 24 h. A1 astrocytes were induced with C1q (400 ng/ml, MyBioSource, MBS 143105), TNF - α (30 ng/ml, Cell Signaling Technology, 8902SF) and IL-1 α (3 ng/ml, Sigma, i3901) for 24 h. After induction, the supernatants were collected as microglia conditioned medium (MCM) and astrocyte conditioned medium (ACM). The culture system was immediately treated with PBM (810 nm, 6 mW, 4.5 cm2, 8 minutes) after induction and then irradiated twice every 12 h. Cucurbitacin I (0.5 μM, MedChem Express, NJ, USA) and recombinant Lcn2 protein (1 μg/ml, R&D Systems) were added to the culture medium of microglia and astrocytes with induced polarization. Adenovirus carrying the LCN2 gene at a multiplicity of infection (MOI) of 20 was purchased from HanBio (Shanghai, China). Transfection was performed according to the manufacturer's instructions for 24 h. Virus lacking a target sequence (empty vector) was used as a control, and the level of knockdown was detected by RT-PCR and Western blot.
Flow cytometry
Ventral spinal cord 4.1 (VSC4.1) was cocultured with MCM and ACM for 24 h, apoptosis was detected by flow cytometry with an Annexin V-FITC apoptosis detection kit (Thermo Fisher) according to the manufacturer's protocol, and 1% bovine serum albumin (BSA) was used to block nonspecific antibody binding. Cells were analysed with a Beckman F500 flow cytometer, and in each sample, at least 10,000 cells were analysed. FlowJo software (TreeStar, San Carlos, CA, USA) was used to analyse the results.
ELISA
The rats were sacrificed under deep anaesthesia, and 2 cm injured spinal segments were immediately removed and homogenized in PBS. The supernatants of tissue homogenates were collected and analysed using rat IL-1α, TNF-α, and C1q (Jiangsu Meimian Industrial Co., Ltd.) ELISA kits according to the manufacturer’s instructions.
RT-PCR
Total RNA was extracted with a commercial RNA extraction kit (Takara Bio, Inc., Shiga, Japan) according to the manufacturer’s protocol. The RNA integrity was evaluated, and purified RNAs with RIN scores > 7 were reverse transcribed. The cDNA was reverse transcribed from 1 μg of RNA template with the PrimeScript RT Master Mix Kit (Takara bio, Inc.). Real-time fluorescent PCR was performed in 10 μL of solution containing 1.5 μL of cDNA, 2.5 μL of ddH2O, 1 μL of primer and 5 μL of SYBR Green according to the manufacturer's instructions. Clean reads were obtained after removing low-quality reads and those containing adapter and poly-N sequences. The GAPDH gene was used as internal reference. The RT-qPCR data were analysed by the 2−ΔΔCT method. The sequences of the primer pairs for target genes are as shown below:
Table 1 RT-PCR primer sequences
Gene
|
Forward primer sequence (5′–3′)
|
Reverse primer sequence (5′–3′)
|
Lcn2
|
CCGACACTGACTACGACCAG
|
AATGCATTGGTCGGTGGGAA
|
iNOS
|
TGGTGAGGGGACTGGACTTT
|
ATCCTGTGTTGTTGGGCTGG
|
C3
|
CCAGCTCCCCATTAGCTCTG
|
GCACTTGCCTCTTTAGGAAGTC
|
Gfap
|
AACCGCATCACCATTCCTGT
|
TCCTTAATGACCTCGCCATCC
|
Amigo2
|
GTTCGCCACAACAACATCAC
|
GTTTCTGCAAGTGGGAGAGC
|
Serping1
|
TGGCTCAGAGGCTAACTGGC
|
GAATCTGAGAAGGCTCTATCCCCA
|
C1q
|
TCTGCACTGTACCCGGCTA
|
CCCTGGTAAATGTGACCCTTTT
|
IL-1α
|
GCACCTTACACCTACCAGAGT
|
AAACTTCTGCCTGACGAGCTT
|
TNF-α
|
CCCTCACACTCAGATCATCTTCT
|
GCTACGACGTGGGCTACAG
|
IL-6
|
ATTGTATGAACAGCGATGATGCAC
|
CCAGGTAGAAACGGAACTCCAG
|
IL-1β
|
CCCTGAACTCAACTGTGAAATAGCA
|
CCCAAGTCAAGGGCTTGGAA
|
GADPH
|
GAACATCATCCCTGCATCCA
|
CCAGTGAGCTTCCCGTTCA
|
Western blot
Total protein was extracted using radioimmunoprecipitation assay (RIPA) lysis and extraction buffer, which included a protease inhibitor cocktail. The concentration of protein was determined by the BCA method. Equal amounts of protein from each sample were separated using 8% or 10% SDS-PAGE and transferred to NC membranes (EMD Millipore Corp, Burlington, MA). The membranes were blocked with 5% bovine serum albumin for 1 h at room temperature and then incubated overnight at 4 °C with the following specific primary antibodies: rabbit anti-iNOS (18985-1-AP, Proteintech, 1:1000), rabbit anti-C3 (ab200999, Abcam, 1:1000), rabbit anti-GFAP (SAB4300647, Sigma, 1:1000), rabbit anti-JAK2 (3230, Cell Signaling Technology, 1:1000), rabbit anti-pJAK2 (AF3022, Affinity, 1:1000), rabbit anti-STAT3 (12640, Cell Signaling Technology, 1:1000), rabbit anti-pSTAT3 (ab76315, Abcam, 1:1000), rabbit anti-Lcn2 (ab63929, Abcam, 1:1000), β-actin (66009-1-Ig, Proteintech, 1:1000). After incubation with the corresponding secondary antibodies (1:2000) for 1 h at room temperature, the membranes were scanned with ECL-Plus Reagent (Millipore, Billerica, MA, United States) and observed under an Amersham Imager 600 (General Electric, United States).
Statistical analysis
At least three independent biological replicates were performed. All data were presented as means ± standard deviation. Statistical analysis was performed with GraphPad Prism 8 software. Student’s t-test was used for comparisons between two groups. For multiple comparisons, the data were analysed by one-way ANOVA followed by Bonferroni’s post hoc test. BBB scales and LSS scores were assessed by two-way ANOVA. Statistical significance was defined at p ≤ 0.05.