Abarenkov K, Nilsson RH, Larsson KH, et al. 2010: The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytol., 186, 281–285. https://nph.onlinelibrary.wiley.com/doi/full/10.1111/j.1469-8137.2009.03160.x (October, 2020).
Allison SD, LeBauer DS, Ofrecio MR, Reyes R, Ta AM, Tran TM 2009: Low levels of nitrogen addition stimulate decomposition by boreal forest fungi. Soil Biol. Biochem., 41, 293–302. http://dx.doi.org/10.1016/j.soilbio.2008.10.032.
Bobbink R, Hicks K, Galloway J, et al. 2010: Global assessment of nitrogen deposition effects on terrestrial plant diversity: a synthesis. (Special Issue: Perspectives on the modern nitrogen cycle.). Ecol. Appl., 20, 30–59. http://www.esajournals.org/doi/abs/10.1890/08-1140.1;%5Cnhttp://sfx.kb.dk.ep.fjernadgang.kb.dk/sfx_local?sid=OVID:cabadb&id=pmid:&id=doi:10.1890%2F08-1140.1&issn=1051-0761&isbn=&volume=20&issue=1&spage=30&pages=30-59&date=2010&title=Ecological+Application.
Butterbach-Bahl K, Willibald G, Papen H 2002: Soil core method for direct simultaneous determination of N2 and N2O emissions from forest soils. Plant Soil, 240, 105–116.
Caporaso JG, Kuczynski J, Stombaugh J, et al. 2010: QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, 7, 335–336. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156573/ (October, 2020).
Chiwa M, Inoue S, Tashiro N, Ohgi D, Uehara Y, Shibata H, Kume A 2015: Assessing the role of forests in mitigating eutrophication downstream of pasture during spring snowmelt. Hydrol. Process., 29, 615–623.
Chiwa M, Tateno R, Hishi T, Shibata H 2018: Nitrate leaching from Japanese temperate forest ecosystems in response to elevated atmospheric N deposition. J. For. Res., 00, 1–15. https://www.tandfonline.com/doi/full/10.1080/13416979.2018.1530082.
Christopher SF, Shibata H, Ozawa M, Nakagawa Y, Mitchell MJ 2008: The effect of soil freezing on N cycling: Comparison of two headwater subcatchments with different vegetation and snowpack conditions in the northern Hokkaido Island of Japan. Biogeochemistry, 88, 15–30.
Decina SM, Hutyra LR, Templer PH 2019: Hotspots of nitrogen deposition in the world’s urban areas: a global data synthesis. Front. Ecol. Environ., fee.2143. https://onlinelibrary.wiley.com/doi/abs/10.1002/fee.2143.
Dentener F, Drevet J, Lamarque JF, et al. 2006: Nitrogen and sulfur deposition on regional and global scales: A multimodel evaluation. Global Biogeochem. Cycles, 20.
Galloway JN, Dentener FJ, Capone DG, et al. 2004: Nitrogen cycles: Past, present, and future. Biogeochemistry, 70, 153–226.
Gilliam FS, Burns DA, Driscoll CT, Frey SD, Lovett GM, Watmough SA 2019: Decreased atmospheric nitrogen deposition in eastern North America: Predicted responses of forest ecosystems. Environ. Pollut., 244, 560–574. https://www.sciencedirect.com/science/article/pii/S0269749118325983 (January, 2019).
Groffman PM, Driscoll CT, Durán J, et al. 2018: Nitrogen oligotrophication in northern hardwood forests. Biogeochemistry, 141, 523–539.
Haddad NM, Brudvig LA, Clobert J, et al. 2015: Habitat fragmentation and its lasting impact on Earth’s ecosystems. Sci. Adv., 1, e1500052. http://advances.sciencemag.org/lookup/doi/10.1126/sciadv.1500052 (June, 2019).
Haney RL, Brinton WH, Evans E 2008: Estimating soil carbon, nitrogen, and phosphorus mineralization from short-term carbon dioxide respiration. Commun. Soil Sci. Plant Anal., 39, 2706–2720. https://www.tandfonline.com/doi/abs/10.1080/00103620802358862 (January, 2021).
Hayashi K, Yan X 2010: Airborne nitrogen load in Japanese and Chinese agroecosystems. Soil Sci. Plant Nutr., 56, 2–18. http://www.tandfonline.com/doi/abs/10.1111/j.1747-0765.2009.00423.x (January, 2021).
Hosokawa N, Isobe K, Urakawa R, Tateno R, Fukuzawa K, Watanabe T, Shibata H 2017: Soil freeze–thaw with root litter alters N transformations during the dormant season in soils under two temperate forests in northern Japan. Soil Biol. Biochem., 114, 270–278. https://www.sciencedirect.com/science/article/pii/S0038071717301190 (April, 2018).
IPCC (Intergovernmental Panel on Climate Change) 2013: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (TF Stocker, D Qin, G-K Plattner, et al. Eds.). Cambridge University Press: Cambridge, United Kingdom and New York, NY, USA. http://www.climatechange2013.org/images/report/WG1AR5_ALL_FINAL.pdf.
Isobe K, Ise Y, Kato H, Oda T, Vincenot CE, Koba K, Tateno R, Senoo K, Ohte N 2020: Consequences of microbial diversity in forest nitrogen cycling: diverse ammonifiers and specialized ammonia oxidizers. ISME J., 14, 12–25. http://dx.doi.org/10.1038/s41396-019-0500-2.
Isobe K, Oka H, Watanabe T, Tateno R, Urakawa R, Liang C, Senoo K, Shibata H 2018: High soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest. Soil Biol. Biochem., 124, 90–100. https://doi.org/10.1016/j.soilbio.2018.05.028.
IUSS Working Group WRB 2015: World Reference Base for Soil Resources 2014, update 2015 International soil classification system for naming soils and creating legends for soil maps. World Reference Base for Soil Resources 2014, update 2015 International soil classification system for naming soils and creating legends for soil maps., World Soil. FAO, Rome.
Janssens IA, Dieleman W, Luyssaert S, et al. 2010: Reduction of forest soil respiration in response to nitrogen deposition. Nat. Geosci., 3, 315–322. http://dx.doi.org/10.1038/ngeo844.
Jassal RS, Black TA, Roy R, Ethier G 2011: Effect of nitrogen fertilization on soil CH4 and N2O fluxes, and soil and bole respiration. Geoderma, 162, 182–186. http://dx.doi.org/10.1016/j.geoderma.2011.02.002 (February, 2020).
Jia X, Zhong Y, Liu J, Zhu G, Shangguan Z, Yan W 2020: Effects of nitrogen enrichment on soil microbial characteristics: From biomass to enzyme activities. Geoderma, 366.
Jia Z, Conrad R 2009: Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ. Microbiol., 11, 1658–1671.
Kanakidou M, Myriokefalitakis S, Daskalakis N, Fanourgakis G, Nenes A, Baker AR, Tsigaridis K, Mihalopoulos N 2016: Past, present, and future atmospheric nitrogen deposition. J. Atmos. Sci., 73, 2039–2047. http://journals.ametsoc.org/doi/10.1175/JAS-D-15-0278.1 (January, 2020).
Koarashi J, Atarashi-Andoh M, Takeuchi E, Nishimura S 2015: Topographic heterogeneity effect on the accumulation of Fukushima-derived radiocesium on forest floor driven by biologically mediated processes. Sci. Rep., 4, 6853. http://www.nature.com/articles/srep06853 (December, 2018).
Koarashi J, Nishimura S, Atarashi-Andoh M, Matsunaga T, Sato T, Nagao S 2018: Radiocesium distribution in aggregate-size fractions of cropland and forest soils affected by the Fukushima nuclear accident. Chemosphere, 205, 147–155. https://ac.els-cdn.com/S0045653518307410/1-s2.0-S0045653518307410-main.pdf?_tid=a9a10763-d3ed-4723-8efa-5c716e746715&acdnat=1525679152_96dbfcd396c99599aff19d14ab971bb2 (May, 2018).
Kramer MG, Lajtha K, Aufdenkampe AK 2017: Depth trends of soil organic matter C:N and 15N natural abundance controlled by association with minerals. Biogeochemistry, 136, 237–248. http://link.springer.com/10.1007/s10533-017-0378-x.
Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C 2006: Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature, 442, 806–809. http://www.nature.com/articles/nature04983 (November, 2019).
Li W, Fu L, Niu B, Wu S, Wooley J 2012: Ultrafast clustering algorithms for metagenomic sequence analysis. Brief. Bioinform., 13, 656–668. https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/bbs035 (December, 2017).
McLauchlan KK, Gerhart LM, Battles JJ, et al. 2017: Centennial-scale reductions in nitrogen availability in temperate forests of the United States. Sci. Rep., 7, 1–7. http://dx.doi.org/10.1038/s41598-017-08170-z.
Nakayama M, Imamura S, Taniguchi T, Tateno R 2019: Does conversion from natural forest to plantation affect fungal and bacterial biodiversity, community structure, and co-occurrence networks in the organic horizon and mineral soil? For. Ecol. Manage.
Nakayama M, Tateno R 2018: Solar radiation strongly influences the quantity of forest tree root exudates. Trees - Struct. Funct., 32, 871–879. http://dx.doi.org/10.1007/s00468-018-1685-0.
Network Center for EANET 2021: EANET Data on the Acid Deposition in the East Asian Region. https://monitoring.eanet.asia/document/public/index (January, 2021).
Niu S, Classen AT, Dukes JS, et al. 2016: Global patterns and substrate-based mechanisms of the terrestrial nitrogen cycle. Ecol. Lett., 19, 697–709.
Nordin A, Strengbom J, Witzell J, Nasholm T, Ericson L 2005: Nitrogen deposition and the biodiversity of boreal forests: Implications for the nitrogen critical load. Ambio, 34, 20–24.
Oksanen JFG, Guillaume Blanchet F, Friendly M, et al. 2018: Vegan: community ecology package. http://cran.r-project.org/package=vegan%0Ahttp://cran.rproject.org/package vegan.
R Core Team 2017: R: A Language and Environment for Statistical Computing. https://www.r-project.org/.
Reay DS, Dentener F, Smith P, Grace J, Feely RA 2008: Global nitrogen deposition and carbon sinks. Nat. Geosci., 1, 430–437.
Reinmann AB, Hutyra LR 2017: Edge effects enhance carbon uptake and its vulnerability to climate change in temperate broadleaf forests. Proc. Natl. Acad. Sci., 114, 107–112. http://www.pnas.org/lookup/doi/10.1073/pnas.1612369114.
Remy E, Gasche R, Kiese R, Wuyts K, Verheyen K, Boeckx P 2017: Edge effects on N2O, NO and CH4 fluxes in two temperate forests. Sci. Total Environ., 575, 1150–1155. https://linkinghub.elsevier.com/retrieve/pii/S0048969716321271 (November, 2018).
Remy E, Wuyts K, Boeckx P, et al. 2016: Strong gradients in nitrogen and carbon stocks at temperate forest edges. For. Ecol. Manage., 376, 45–58. https://www.sciencedirect.com/science/article/pii/S0378112716302870?via%3Dihub (November, 2018).
Remy E, Wuyts K, Van Nevel L, De Smedt P, Boeckx P, Verheyen K 2018: Driving Factors Behind Litter Decomposition and Nutrient Release at Temperate Forest Edges. Ecosystems, 21, 755–771. http://link.springer.com/10.1007/s10021-017-0182-4 (November, 2018).
Remy E, Wuyts K, Verheyen K, Gundersen P, Boeckx P 2018: Altered microbial communities and nitrogen availability in temperate forest edges. Soil Biol. Biochem., 116, 179–188. https://doi.org/10.1016/j.soilbio.2017.10.016.
Rotthauwe JH, Witzel KP, Liesack W 1997: The ammonia monooxygenase structural gene amoa as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol., 63, 4704–4712.
Rustad L, Campbell J, Marion G, Norby R, Mitchell M, Hartley A, Cornelissen J, Gurevitch J 2001: A meta-analysis of the response of soil respiration, net nitrogen mineralization, and aboveground plant growth to experimental ecosystem warming. Oecologia, 126, 543–562. https://www.jstor.org/stable/4222885?seq=1 (January, 2021).
Schwede DB, Simpson D, Tan J, Fu JS, Dentener F, Du E, deVries W 2018: Spatial variation of modelled total, dry and wet nitrogen deposition to forests at global scale. Environ. Pollut., 243, 1287–1301. /pmc/articles/PMC7050289/?report=abstract (October, 2020).
Smith IA, Hutyra LR, Reinmann AB, Marrs JK, Thompson JR 2018: Piecing together the fragments: elucidating edge effects on forest carbon dynamics. Front. Ecol. Environ., 16, 213–221. http://doi.wiley.com/10.1002/fee.1793 (April, 2019).
Smith KA, Dobbie KE, Ball BC, et al. 2000: Oxidation of atmospheric methane in Northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink. Glob. Chang. Biol., 6, 791–803. http://doi.wiley.com/10.1046/j.1365-2486.2000.00356.x (February, 2020).
Strickland MS, Rousk J 2010: Considering fungal: Bacterial dominance in soils - Methods, controls, and ecosystem implications. Soil Biol. Biochem., 42, 1385–1395. http://dx.doi.org/10.1016/j.soilbio.2010.05.007.
Tateno R, Imada S, Watanabe T, Fukuzawa K, Shibata H 2019: Reduced snow cover changes nitrogen use in canopy and understory vegetation during the subsequent growing season. Plant Soil, 438, 157–172. http://link.springer.com/10.1007/s11104-019-04011-2 (March, 2020).
Tian D, Jiang L, Ma S, et al. 2017: Effects of nitrogen deposition on soil microbial communities in temperate and subtropical forests in China. Sci. Total Environ., 607–608, 1367–1375. http://dx.doi.org/10.1016/j.scitotenv.2017.06.057.
Tourna M, Freitag TE, Nicol GW, Prosser JI 2008: Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ. Microbiol., 10, 1357–1364. http://doi.wiley.com/10.1111/j.1462-2920.2007.01563.x (January, 2020).
Urakawa R, Ohte N, Shibata H, et al. 2016: Factors contributing to soil nitrogen mineralization and nitrification rates of forest soils in the Japanese archipelago. For. Ecol. Manage., 361, 382–396. http://dx.doi.org/10.1016/j.foreco.2015.11.033.
Urakawa R, Ohte N, Shibata H, et al. 2014: Biogeochemical nitrogen properties of forest soils in the Japanese archipelago. Ecol. Res., 30, 1–2. http://doi.wiley.com/10.1007/s11284-014-1212-8 (February, 2019).
Vance ED, Brookes PC, Jenkinson DS 1987: An extraction method for measuring soil microbial biomass C. Soil Biol. Biochem., 19, 703–707.
Waldner P, Marchetto A, Thimonier A, et al. 2014: Detection of temporal trends in atmospheric deposition of inorganic nitrogen and sulphate to forests in Europe. Atmos. Environ., 95, 363–374. https://www.sciencedirect.com/science/article/pii/S1352231014005007?via%3Dihub (October, 2020).
Waldrop MP, Zak DR, Sinsabaugh RL 2004: Microbial community response to nitrogen deposition in northern forest ecosystems. Soil Biol. Biochem., 36, 1443–1451.
Wang Q, Garrity GM, Tiedje JM, Cole JR 2007: Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol., 73, 5261–5267. http://www.ncbi.nlm.nih.gov/pubmed/17586664 (February, 2018).
Waud M, Busschaert P, Ruyters S, Jacquemyn H, Lievens B 2014: Impact of primer choice on characterization of orchid mycorrhizal communities using 454 pyrosequencing. Mol. Ecol. Resour., 14, 679–699. http://doi.wiley.com/10.1111/1755-0998.12229 (February, 2020).
Zak DR, Holmes WE, MacDonald NW, Pregitzer KS 1999: Soil Temperature, Matric Potential, and the Kinetics of Microbial Respiration and Nitrogen Mineralization. Soil Sci. Soc. Am. J., 63, 575–584. http://doi.wiley.com/10.2136/sssaj1999.03615995006300030021x (January, 2021).
Zhang T, Chen HYH, Ruan H 2018: Global negative effects of nitrogen deposition on soil microbes. ISME J., 12, 1817–1825. http://www.nature.com/articles/s41396-018-0096-y (January, 2020).