Cell culture in complete medium
HEY and MDA-MB-231 cell lines were obtained from the American Type Culture Collection (ATCC; USA). HEY cells were cultured in Roswell Park Memorial Institute (RPMI)-1640 medium (Gibco, Thermo Fisher Scientific, Suzhou, China), and MDA-MB-231 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Sigma-Aldrich), supplemented with 10% fetal bovine serum (FBS) (Gibco, Life Technologies, New Zealand) and 1% penicillin/streptomycin (Gibco, Life Technologies, USA). Medium supplemented with serum and antibiotics was defined as complete medium. Cells cultured in complete medium were maintained in a humidified atmosphere at 37 °C and 5% CO2.
Induction and definition of PGCCs
The method for CoCl2 treatment was previously described in our published studies [10]. Briefly, HEY and MDA-MB-231 cells were cultured in T25 cell flasks containing complete medium until they reached 80–90% confluence. Cells were treated with 450 μM CoCl2 (Sigma-Aldrich, St. Louis, MO, USA) for 48-72 h, depending on their resistance to hypoxia. Most regular-sized cells were dead after CoCl2 treatment, and only a few scattered PGCCs survived. After 10-15 days, the surviving PGCCs began to produce daughter cells via asymmetric division. CoCl2 treatment was repeated three times to acquire sufficient PGCCs with daughter cells for subsequent experiments.
Adipogenic differentiation of cancer cells
Control cells and PGCCs with daughter cells were seeded into a 6-well plate and cultured in complete medium until they reached 70–80% confluence. The medium was replaced with differentiation medium A for 24 h (StemPro Adipogenic Differentiation Kit; Cyagen Biosciences, Suzhou, China; containing 10% FBS, 0.5 mM IBMX, 4 μM insulin, 1 μM dexamethasone, and 10 mM rosiglitazone), then with differentiation medium B for another 48 h (α-MEM containing 10% FBS and 4 μM insulin). The cells were repeatedly cultured in A and B media, then harvested for subsequent experiments.
Oil red O staining
Oil Red O (ORO) staining was performed according to the manufacturer's instructions. HEY and MDA-MB-231 control and PGCCs with daughter cells before and after adipogenic differentiation were fixed with 4% paraformaldehyde for 24 h at 25 °C and then incubated with fresh ORO solution (Solarbio, Beijing, China) for 15 min. ORO-stained intracellular lipids were quantified by measuring the optical density (OD) at 510 nm using a microplate reader (BioTek, USA).
Western blot (WB) analysis
Cell samples were collected and lysed in radio-immunoprecipitation (IP) assay (RIPA) lysis buffer on ice for 30 min, then centrifuged at 14000 rpm and 4 °C for 30 min. The proteins were fully denatured by boiling at 100 °C for 10 min. After the concentrations were determined, the proteins were separated on a 10% sodium dodecyl sulfate (SDS) polyacrylamide gel and transferred to a polyvinylidene fluoride (PVDF) membrane (Beyotime, Haimen, China). The membrane was blocked with 5% skim milk at room temperature for 2 h, then incubated with primary antibodies. Detailed information on the antibodies is included in Supplementary Table 1. All WB assays were performed in triplicate.
Flow cytometry analysis of the cell cycle
To examine DNA content and cell cycle status, control cells and PGCCs with daughter cells before and after adipogenic differentiation were harvested. The cell pellets were resuspended in 0.1% PBS and fixed with 75% ethanol at 20 °C for 12 h, then permeabilized with 0.1% Triton X-100 at room temperature for 20 min. Following treatment with RNase at 37 °C for 30 min, the cells were incubated with propidium iodide (50 µg/mL) at 25 °C for 15 min. Cell cycle was analyzed by flow cytometry (BD FACSCalibur™, BD Biosciences). The percentage of cells in the G1, S, and G2 phases were quantified using BD CellQuestä version 5.1 software (BD Biosciences).
Quantitative real-time PCR
Total RNA was extracted using the TRIzol/chloroform method, and RNA was precipitated from the aqueous phase using isopropyl alcohol. RNA was reverse transcribed using a High-Capacity RNA to cDNA kit (TIAGEN, KR116, Beijing, China). Quantitative real-time PCR (qPCR) was performed using a Roche LightCycler 480 Real-Time PCR System. The qPCR conditions included 2 μL of cDNA diluted in nuclease-free water, 50 ng of total RNA, 25 μL of Universal PCR Master Mix (CWBIO, 0957), and 1 μL of 10 μM forward primer. Nuclease-free water was added to 1 μL (10 μM) reverse primer to reach a final volume of 50 μL. The amplification procedure was as follows: initial denaturation at 95 °C for 15 min, followed by 45 cycles of 95 °C for 15 s, 60 °C for 1 min, and 40 °C for 30 s. β-actin was used as the reference gene for the quality and quantity of cDNA. Detailed primer sequences are shown in Supplementary Table 2.
Transient siRNA transfection
p53 was knocked down by transient siRNA transfection. The siRNA oligonucleotides were synthesized by Gene-pharma (Shanghai, China) and included three siRNA interference sequences, one positive control sequence (GAPDH), one negative control (NC) sequence, and one mock control (MC, transfection reagent only). Three p53 transfection sequences, 339, 886, and 985, were used to inhibit the expression of p53 (Supplementary Table 3). Control cells and PGCCs with daughter cells grown in 6-well plates at 60–80% confluence were transfected with NC siRNA, p53-siRNA, MC, and GAPDH-siRNA using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) and 1× Opti-MEM (Gibco, USA) according to the manufacturer’s instructions [siRNA:lipo = 20:1 (pmol:uL)]. After transfection for 48 h, WB was performed to detect the efficiency of the target protein inhibition.
P300 histone acetyltransferase activity assay
P300 histone acetyltransferase (HAT) activity assay was performed using the P300 HAT spectrophotometry quantitative detection kit (GenMed Scientific Inc., USA) to test the differences in P300 HAT activity before and after adipogenic differentiation in vitro. Histone H3 peptide was used as the substrate for detection. HEY and MDA-MB-231 cells were treated with sodium butyrate for 48 h. Nuclear extracts were harvested as described above and subjected to the assays. Briefly, each nuclear extract was incubated with 100 µM acetyl-CoA and 1× HAT assay buffer on a histone H3-precoated enzyme-linked immunosorbent assay plate for 30 min. P300 transfers the acetyl group of acetyl-CoA to the histone peptide, releasing sulfhydryl-CoA, which then reacts with Ellman's reagent to produce a change in the absorbance peak. After several washes with PBS, acetylated histones were detected using the HAT assay kit according to the manufacturer’s protocol. Fluorescence intensity was detected using a multifunction microplate reader (BioTek) at 412 nm. HAT activity was calculated using the following equation: {[sample reading-background reading] × 0.1 (system capacity; mL) × sample dilution factor} ÷ [ 0.01 (sample capacity; mL) × 13.6 (millimolar absorbance coefficient) × 15 (min)] = unit/mL ÷ (sample protein concentration) mg/mL = unit/mg
A485 inhibitor treatment
A485 is a potent and selective catalytic inhibitor of p300/CBP [18]. Control cells and PGCCs with daughter cells before and after adipogenic differentiation were cultured in a 6-well plate until they reached 80% confluence. Each well was then treated with 10 μM A485 (Selleck, USA) for 24 h.
Cell counting kit-8 (CCK8) assay
Cell viability was evaluated using the CCK8 assay. Control cells and PGCCs with daughter cells before and after adipogenic differentiation were seeded at 2,000 cells per well in 96-well plates (three replicate wells per group) and incubated for 12 h. Wells containing medium alone were used as controls. The cells in treatment wells were treated with different concentrations of A485 and cultured for various time intervals. After treatment, 10 µL of CCK8 (Dojndo, Japan) was added to each well and incubated for 2 h. OD was measured using a Bio-Rad microplate reader at 450 nm and was calculated from the average value of readings after subtracting the average value of the control.
Co-IP and mass spectrometry (MS)
Co-IP was performed using the Pierce Classic Magnetic IP/Co-IP Kit (Thermo Fischer Scientific, 87787, USA) according to the manufacturer’s instructions. Control cells and PGCCs with daughter cells before and after adipogenic differentiation were lysed using IP lysis buffer (Thermo Fisher Scientific) containing halt protease and phosphatase inhibitor cocktail (1:100 dilution) for 30 min, then centrifuged at 14000 rpm for 10 min. The supernatant was incubated with rabbit anti-PPARγ monoclonal antibody and mouse anti-SIRT1 monoclonal antibody (1:50) at 4 °C overnight. Normal rabbit IgG (Beyotime, Shanghai, China) was used as the NC. Pre-washed protein A/G agarose beads (Thermo Fisher Scientific) were added to each IP tube and incubated at 4 °C for 2 h. After washing and centrifugation, the immunoprecipitates were examined by WB. MS analysis of Co-IP substrates was performed using tandem MS (MS/MS) in Q ExactiveTM Plus (Thermo) coupled online to an ultra-performance liquid chromatography system for the acquisition of MS/MS data. The peptides were identified and quantified using Proteome Discoverer 1.3. The peptide confidence was set at a high value, and the peptide ion score was set at >20.
Immunocytochemical (ICC) and immunohistochemical (IHC) staining
For ICC staining, cells grown on coverslips were washed with sterile PBS, then fixed with cold methanol for 30 min. After treating with 0.3% endogenous peroxidase inhibitor (Zhongshan Inc., Beijing, China) for 15 min, the cells were incubated with 1.5% normal goat serum (Zhongshan Inc., Beijing, China) for 20 min to block non-specific protein binding. After incubation with primary antibodies at 4 °C overnight, biotinylated goat anti-mouse/rabbit IgG (Zhongshan Inc., Beijing, China) and horseradish peroxidase-labeled streptomycin (Zhongshan Inc., Beijing, China) were added to the slides for 20 and 15 min, respectively. For IHC staining, paraffin-embedded tissue sections were deparaffinized in xylene and dehydrated in a series of gradient alcohol solutions. Antigen retrieval was carried out by adding citrate buffer solution (Origene, Wuxi, China) at 160 °C for 1-2 min. After the sections were incubated with primary antibodies and reacted with biotinylated goat anti-rabbit IgG antibody for 20 min, the signal was detected using the labeled streptavidin-biotin system in the presence of the chromogen 3,3-diaminobenzidine or alkaline phosphatase. Nuclei were counterstained with hematoxylin.
Wound healing assay
Control cells and PGCCs with daughter cells before and after adipogenic differentiation were seeded into 12-well plates (1×105 per well, three replicate wells per group) and cultured until they reached 100% confluence. Sterile pipette tips were then used to uniformly scratch the monolayer cells vertically to form wound tracks. After rinsing with PBS to remove floating cells, the wells were cultured in serum-free medium. The migration ability was evaluated by photographing the wound area at 0, 12, and 24 h for HEY and at 0, 16, and 32 h for MDA-MB-231 cells at the same scratch position. ImageJ software was used to outline the migration area and calculate the wound-healing index according to the following formula: [(wound area at 0 h) - (wound area at indicated time)]/(wound area at 0 h). A high score indicated strong migration ability.
Cell migration and invasion assays
Control cells and PGCCs with daughter cells before and after adipogenic differentiation were washed three times with FBS-free medium and counted using an automated cell counter (Invitrogen, CA, USA). Cell migration and invasion were assessed using transwell migration and invasion assays (8 μm; Corning Inc.), respectively. For the migration assay, cells (5×104 cells per insert) in 200 μL medium without FBS were added to the upper chamber. For the invasion assay, cells (2×105 cells per insert) in 200 μL of medium without FBS were added to the upper chamber coated with Matrigel. Medium containing 20% FBS was added to the lower chamber, and the 24-well plates were incubated for an additional 12-24 h at 37 °C. Then, the cells were fixed in methanol for 30 min and stained with 0.1% crystal violet for 30 min. Migration and invasion abilities were assessed by counting the number of cells per field. Photos were taken at 100× magnification, and at least five different fields were counted. Three independent experiments were performed.
Plate clone formation assay
Control cells and PGCCs with daughter cells before and after adipogenic differentiation were counted. Cell suspensions (2 mL/well) with 30, 60, and 120 cells were cultured in a 12-well plate, and the plates were incubated for at least 2 weeks at 37 °C. Incubation was stopped when a white cell clone was visible. The cell clones were washed with PBS and fixed with cold methanol for 30 min. After staining with 0.1% crystal violet for 30 min, the number of cell clone groups per well was counted under a microscope (the number of cells in a single clone should be more than 50), and the efficiency of colony formation was calculated using the following formula: formation efficiency = (number of clones/number of cells inoculated).
Animal Experiments
Forty 4- to 6-week-old female BALB/c NU/NU nude mice (20 for HEY and 20 for MDA-MB-231) were obtained from Beijing Weitonglihua Co. Ltd. The 20 nude mice in HEY and MDA-MB-231 were divided into four groups (five mice per group), and each group was injected with 200 μL of tumor cell suspension (~1×107 cells) containing one of the following: (i) control cells, (ii) control cells after adipogenic differentiation, (iii) PGCCs with their daughter cells, or (iv) PGCCs with their daughter cells after adipogenic differentiation. Starting from day 5 after HEY cell inoculation and day 15 after MDA-MB-231 cell inoculation, the tumor mass could be touched, and the size of the tumor was measured every other day. The animals were sacrificed 30 days after inoculation. Paraffin-embedded tumor tissues were used for hematoxylin & eosin (H&E) staining and IHC staining, and fresh tumor tissues were used for WB analysis. The animal study was approved and supported by the Institutional Animal Care and Use Committee of the Tianjin Union Medical Center.
H&E staining
Tumor sections were fixed in formalin for 24 h at room temperature and embedded in paraffin, then 4-µm-thick sections were made. The tissue sections were subsequently deparaffinized in xylene for 12 h at 75 °C and rehydrated using a descending ethanol series. Sections were stained with 0.2% hematoxylin (Baso, Zhuhai, Guangzhou, China) at room temperature for 1 min and with 0.5% eosin for 2 min. After staining, the sections were dehydrated and mounted on coverslips.
Statistical Analysis
Data are presented as the mean ± SEM. Statistical analysis and graphs were generated using SPSS 22 software (SPSS Inc., Chicago, USA) and GraphPad Prism software. Statistical analyses were performed as indicated in the figure legends. In vitro studies were biologically repeated at least three times, and statistical analysis was performed using ANOVA and unpaired t-test. The number of animals in each experiment is indicated in the figure legends. In vivo statistical analysis was performed using the Kruskal-Wallis test corrected for multiple comparisons. Statistical significance was set at P<0.05. Error bars represent ± S.D., and p-values represent comparisons with each control (***P < 0.001; **P < 0.005; * P < 0.05; NS, non-significant).