Detection of the epidemic
On November 19, 2020, a 39-year-old male went to the fever clinic of Zhoupu Hospital in Shanghai Pudong New Area due to fever and sore throat. He was a security inspector, worked in a logistics company of the Shanghai Pudong International Airport West Division, and was responsible for the security check of the staff entering the company (Table 1). The next morning, his wife went to the fever clinic of Pudong Hospital for the same symptoms. On the night of November 20, comprehensive results of clinical examination, expert consultation and nucleic acid, COVID-19 diagnosis of the couple was confirmed. As of November 21, 118 close contacts and 499 close contacts’ close contacts of these two cases were traced and were placed under 14 days’ medical isolation and observation, their respiratory specimens were collected for nucleic acid test (Table 2). Additional 5107 employees of the company were also tested for SARS-CoV-2. As a result, three more people were test-positive and were diagnosed with COVID-19 successively.
Table 1
Characteristics and contacts of the five cases diagnosed in Pudong New Area during November 20 to 22, 2020
Characteristics
|
Case 1
|
Case 2
|
Case 3
|
Case 4
|
Case 5
|
Demography
|
|
|
|
|
|
Sex
|
Male
|
Female
|
Male
|
Female
|
Male
|
Age, years
|
39
|
34
|
29
|
30
|
46
|
Body mass index (BMI)
|
24.11
|
22.48
|
24.44
|
26.31
|
31.14
|
Comorbidity
|
None
|
Thyroid dysfunction
|
None
|
None
|
None
|
Occupation
|
Security inspector
|
Nurse
|
Crew coordinator
|
Customer service
|
Office operator
|
Epidemiological history
|
|
|
|
|
|
Way of detection
|
Health seeking
|
Health seeking
|
Screening in the company
|
Case 3's close contact
|
Case 1's close contact
|
Suspected exposure 14 days
before illness onset
|
Security check for case 3
|
Live with case 1
|
Place documents in the foreign aircraft cabins
|
Live with case 3
|
Security checked by case 1
|
Vaccination
|
|
|
|
|
|
2019-nCoV
|
No
|
No
|
No
|
No
|
No
|
Influenza
|
No
|
Yes
|
No
|
No
|
No
|
Clinical manifestation and outcome
|
|
|
|
|
|
Fever (℃)
|
39.0
|
37.8
|
37.9
|
No
|
No
|
Other symptoms
|
Sore throat
|
Sore throat
|
Cough
|
Anosmia, ageusia, cough
|
No
|
Clinical type
|
Moderate
|
Moderate
|
Moderate
|
Moderate
|
Moderate
|
Length of hospital stay (LOS, days)
|
36
|
28
|
44
|
16
|
37
|
Outcome
|
Recovery
|
Recovery
|
Recovery
|
Recovery
|
Recovery
|
Clinical examination
|
|
|
|
|
|
White blood cell count (×109 per L,
norm 4.0–10.0)
|
5.78
|
4.01
|
8.70
|
8.10
|
5.00
|
Lymphocyte count (×109 per L,
norm 0.8–3.5)
|
0.97
|
0.78
|
1.40
|
2.00
|
1.60
|
Chest computed tomography scan
|
Infection in both lungs
|
Inflammation in the lower lobe of both lungs
|
Infection in the lower lobe of left lung
|
Inflammation of the lower lobe of right lung
|
Inflammation in both lungs
|
Table 2
Nucleic acid test results of samples collected from related people and environment
Case
|
Close contacts
|
Close contacts' close contacts
|
General contacts
|
Screening objects
|
Total
|
No. of
collected
|
No. of
positive
|
No. of
collected
|
No. of
positive
|
No. of
collected
|
No. of
positive
|
No. of
collected
|
No. of
positive
|
No. of
collected
|
No. of
positive
|
Case 1
|
49
|
1 a
|
296
|
0
|
17
|
0
|
1053
|
1 b
|
1415
|
2
|
Case 2
|
69
|
0
|
203
|
0
|
51
|
0
|
4054
|
0
|
4377
|
0
|
Case 3
|
11
|
1 c
|
29
|
0
|
29
|
0
|
-
|
-
|
69
|
1
|
Case 4
|
37
|
0
|
276
|
0
|
154
|
0
|
1593
|
0
|
2060
|
0
|
Case 5
|
21
|
0
|
53
|
0
|
5
|
0
|
-
|
-
|
79
|
0
|
Total
|
187
|
2
|
857
|
0
|
256
|
0
|
6700
|
|
8000
|
3
|
a case 5; b case 3; c case 4. |
Case 3 was a crew coordinator, who had repeatedly placed documents in the foreign aircraft cabins during 14 days before illness onset on November 19. On November 12, he was security checked by case 1 without effective personal protection. And the latter also checked for case 5 before illness onset. As for case 2 and case 4, according to the result of the screening and epidemiological investigation, they have not contacted with COVID-19 patients or other suspicious persons during 14 days before the illness, except for their husbands. All five cases had not been exposed to imported cold-chain food and related environment during 14 days before illness.
Characteristics of the cases
Characteristics and contacts of the five cases diagnosed in Pudong New Area during November 20 to 22, 2020 were showed in table 1. Case 1, 3 and 5 worked for the same logistics company at Pudong International Airport, and had close contact with each other during work. Case 2 is the wife of case 1, case 4 is the wife of case 3. The age of the cases ranged from 29 to 46 years. No one had been vaccinated against SARS-CoV-2 before illness onset. Three of them had fever, and four cases had other symptoms, such as sore throat and cough. The clinical type of all the five cases were moderate, and recovered after treatment. The length of hospital stay (LOS) were 13 to 42 days. Their white blood cell count and lymphocyte count were within the normal range or below. Infection and inflammation of lungs were showed in their results of the chest computed tomography scans (Fig.1). In addition, IgM and IgG antibodies in all cases were negative.
Gene sequencing
According to the result of gene sequencing, the sequences of the five cases’ virus isolates were homologous and were consistent with that of the surface samples collected from the imported goods in the logistics company. The virus isolates all belonged to the L-lineage European branch Ⅱ.1, which was a prevalent branch in America that most of the imported cases in China belonged to. It was suggested that the source of infection might be cases 3’s exposure to the virus-contaminated environment of foreign aircraft cabins.
Transmission chains
Comprehensive the results of epidemiological investigations and viral gene sequencing, we speculated that the source of infection in this outbreak came from abroad. Cases 3 was initially infected with COVID-19 after exposure to virus-contaminated foreign aircraft cabins, the virus was transmitted to Case 1, and then to Case 5, due to close contacts during the work without effective protection. Cases 2 and case 4 were infected from their husbands, close contacts led to the intra-household transmission (Fig.2).
Control measures
Control measures have been implemented immediately after the outbreak. The five cases were transferred to the designated medical institution for isolation and treatment. Three communities where the cases live were identified as medium-risk areas, and closed health management were implemented for residents. Specific venues where the cases worked or spent extensive time had been closed and comprehensively disinfected. Close contacts and close contacts’ close contacts were traced and were placed under medical isolation and observation. Samples of related people and environments were collected for nucleic acid test (Table 2). The secondary attack rate was 0.04% (3/8000). 4 of 1093 environmental samples were positive, which were all collected from case 1 and case 2’s house. 1 of 54 surface samples collected in the adjacent area of the logistics company was also positive for SARS-CoV-2. In addition, a total of 11,794 staff in key positions at Pudong International Airport were vaccinated against the SARS-CoV-2 emergently, including logistics personnel, security personnel, inspection personnel, airline staff, and so on. The epidemic only lasted several days before it was brought under control.