3.1 Community structure of consortium 5H
The halotolerant consortium 5H was enriched by weekly transfer for 3 months to obtain a stable bacteria community. The degradation rate and cell growth curve was shown in Fig. 1. Consortium 5H showed a rapid degradation rate of phenanthrene under 5% salinity. In just 2 days, 84% of the phenanthrene had been degraded, and after 6 days, all of the phenanthrene had been removed from the medium. Consistent with the phenanthrene removal, the OD600 value of consortium 5H increased to 0.095 in day 2 and maintained around 0.11 in the following degradation process. Halotolerant strain Ochrobactrum sp. VA1 isolated by Arulazhagan et al. was identified with ability to degrade 3 mg/L phenannthrene in 4 days under 3% salt content (Arulazhagan and Vasudevan, 2011). Marinobacter sp. N4 was identified able to degrade 100% phenanthrene in about 7 days with the assistance of Halomonas sp. G29 (Wang et al., 2019). Consortium CY-1 enriched by Wang et al. was reported able to degrade PAHs in 7 days under 5% salinity (Wang et al., 2018). Dastgheib et al. reported that halophilic consortium Qphe could eliminate 100 mg/L phenanthrene in 12 day when cultured under 5% salinity (Dastgheib et al., 2012). Compared with degradation rate of reported in both halotolerant isolates and consortiums, consortium 5H showed a relatively high rate in phenanthrene removal under saline condition, especially in the early stage of the degradation.
Through high-throughput sequencing, the community structure of consortium 5H was studied. As shown in Fig. 2, Methylophaga (57.5%), Marinobacter (18.2%) and Thalassospira (15.2%) were identified as the most abundant genus in consortium 5H. To the best of our knowledge, no pure cultures of Methylophaga have been reported to be capable of degrading PAHs on their own. However, some researchers had found this genera closely related with PAHs degradation in contaminated beach environment (Joaquim et al., 2010), oil contaminated sea water (Mishamandani et al., 2016; Muangchinda et al., 2018), and marine oil spill samples (Jiménez et al., 2011). This is the first report that Methylophaga was identified as the most abundant player in a halotolerant PAH-degrading consortium. Marinobacter species were discovered to be linked to PAHs polluted marine environments (Hidalgo et al., 2020; Jamal, 2020; Rodrigue et al., 2020). Marinobacter isolates able to degrade PAHs was firstly reported by Gauthier et al that was able to degrade low-molecular-weight PAHs (Gauthier et al., 1992). Then, Marinobacter had been widely detected or isolated in polluted marine environments with high PAH-removal efficiency (Yu et al., 2005; Joaquim et al., 2010; Guangsu et al., 2013; Cui et al., 2014). Thalassospira sp. TSL5-1 reported by Zhou et al. had been identified able to degrade high-molecular-weight PAHs (Zhou et al., 2016). Other genus included in consortium 5H, such as Halomonas (1.6%), Alcanivorax (0.5%), and Martelalla (0.3%), were also found to be closely related with PAH-contamination and degradation. The presence of Methylophaga, Marinobacter, and other genus with high salt tolerance can explain why consortium 5H has such a high rate of PAH removal during the degradation process.
3.2 Metabolic pathway of phenanthrene degradation in consortium 5H
GC-MS and enzymatic activity detection were used to investigate the metabolic pathway for PAHs degradation in consortium 5H. The metabolic intermediates detected in the PAHs degradation process were shown in Table 1. Metabolite 1 eluted at 38.25 min was detected with the major ions at m/z 336 and major ions fragments at m/z 317, 243, 185, 147, and 73. Compared with the mass spectrum obtained by standard compounds detection, metabolite 1 was identified to be 1-hydroxy-2-naphthoic acid. Metabolite 2 with major ion fragment at m/z 306, 216, 186, 147, 73 was identified as TMS-derived 1,2-dihydroxynaphthalene. Metabolite 3 eluted at 35.11 min was identified with major ions fragments at m/z 443 (M+), 370, 311, 281, 193, 137, 73. This intermediate was considered as gentisic acid. Metabolite 5 with ion fragment m/z at 254 (M+), 223, 197, 151, 133, 73 was eluted at 22.56 min, which was considered as catechol. All the detected intermediates were closely related to PAHs biodegradation. 1-hydroxy-2-naphthoic acid was once considered as the major accumulated intermediates in the degradation of phenanthrene by Martelella sp. AD-3(Feng et al., 2012) and Marinobacter sp. N4 (Wang et al., 2019). 1,2-dihydroxynaphthalene is also an important intermediates that are widely reported in PAH-degrading Pseudomonas. Salicylate hydroxylase that encoded by nahG like genes in Pseudomonas and Marinobacter was reported able to transform 1-hydroxy-2-naphthoic acid to 1,2-dihydroxynaphthalene in PAH-degrading process (Sanseverino et al., 1993; Rosselló-Mora et al., 1994; Wang et al., 2019). Gentisic acid and catechol are important intermediates with single benzene ring, that are detected in PAH-degrading halophiles frequently (Huang et al., 2015; Zhou et al., 2016; Wang et al., 2018). Meanwhile, studies indicated that these two compounds were always followed by ring-cleavage process in PAH-degrading process and thus serve as indicators for PAHs downstream degrading pathway.
Table 1
detected intermediates in PAH-degrading process by consortium 5H
Metabolites | Retention Time | m/z of major ions (m/z of major ion fragments) | Identification |
1 | 38.25 | 336 (317, 243, 185, 147, 73) | 1-hydroxy-2-naphthoic acid |
2 | 39.86 | 306 (289, 216, 186, 147, 73) | 1,2-dihydroxynaphthalene |
3 | 35.11 | 443 (370, 311, 281, 193, 137, 73) | Gentisic acid |
4 | 22.56 | 254 (223, 197, 151, 133, 73) | Catechol |
The produced gentisic acid and catechol could be further ring-cleaved by G12O, C12O and C23O, respectively. As reported by Wang et al., G12O, C12O and C23O pathway were all existed in a halotolerant PAH-degrading consortium and G12O pathway was identified as the dominant downstream pathway (Wang et al., 2018). In order to further investigate the downstream pathways of PAH-degrading in consortium 5H, the activities of G12O, C12O and C23O were investigated under different salinity. As shown in Fig. 3, the activities of G12O and C23O were identified with a wide range of salinity. Both G12O and C23O showed the highest activity at 3% salinity, and their activity was dramatically reduced as salinity rose above 10%. The activity of C12O had not been detected in this experiment, indicating that C12O pathway was not involved in PAH-downstream degrading process in consortium 5H. Meanwhile, in consortium 5H, the behavior of RHD was measured in order to better understand the PAH-upstream degrading pathway. All enzymatic activities shown in Fig. 3 were relative activities using the activity of corresponding enzyme under 5% salinity as 100%. A shown in Fig. 3A, the RHD activity was slightly influenced by salinity from 1–10%. Even at 10%, the RHD can still hold 88% activity compared to the 5% condition, indicating a high salt tolerance of RHD in consortium 5H. The activity of G12O was highest at 3% salinity, which was about 158% compared with that in 5% salinity (Fig. 3B). When the salt content rise to 10%, the G12O activity was greatly reduced, with only 43% remaining. C23O was detected with highest activity at 3% salinity (255%, Fig. 3C). When the salinity increased to 10%, only 24% activity was remained. The trend of enzyme activity was consistent with the change of PAHs degradation rate in consortium 5H and revealed a high tolerance to salinity variation.
The PAH-degrading pathway of consortium 5H was proposed based on the results of intermediate detection and enzymatic activities. As shown in Fig. 4, the first step of phenanthrene degradation is predicted to be catalyzed by RHD which converts phenanthrene to cis-3,4-dihydroxy-3,4-dihydrophenanthrene, a process that has been widely found in PAH-degrading Pseudomonas (Natalia et al., 1999), Sphingomonas (Cho et al., 2006) and Martelella (Feng et al., 2012). Then by several metabolic steps, the cis-3,4-dihydroxy-3,4-dihydrophenanthrene was transferred to 1-hydroxy-2-naphthoic acid and 1,2-dihydroxynaphthalene. Then, as the detection of gentisic acid and catechol, the following pathway was proposed to be separated. Then, using G12O and C23O, the last benzene ring was cleaved. Both G12O and C23O were found in PAH-degrading pure cultures (Liu et al., 2004; Hesham et al., 2014; Huang et al., 2015). Several studies reported the co-existing of multiple PAH-downstream pathways in one halophilic consortium. As reported by Wang et al., consortium CY-1 was able to degrade PAHs using G12O, C12O, C23O and P34O pathways (Wang et al., 2018). The intermediates 1-hydroxy-2-naphthoic acid and catechol were also detected in halophilic consortium Qphe (Dastgheib et al., 2012). Consortiums are thought to have higher functional redundancy than pure cultures since they own many pathways. Meanwhile, Cooperation was predicted to be the dominant mode of PAH elimination, particularly in hypersaline conditions (Debajyoti et al., 2016; Wang et al., 2018). Different bacteria species participating in the degradation process through a variety of downstream degradation pathways will greatly promote the degradation rate of PAHs and avoid the accumulation of intermediate metabolites.
3.3 Environmental factors affecting the PAH-degrading process in consortium 5H
The effect of salinity and pH on the PAH-degrading process of consortium 5H were also investigated in this study. As shown in Fig. 5A, consortium 5H was able to degrade 100% of phenanthrene under a wide range of salinity (1–10%). Under 1% salinity, consortium 5H showed the highest rate of phenanthrene degradation, 97.78% phenanthrene was removed in 3 days. The degradation ability of phenanthrene showed no significant difference when salinity increased to 3% and 5%. Meanwhile, under 10% salinity, consortium 5H was able to degrade nearly 100% phenanthrene in 7 days. However, only 30% of phenanthrene was removed under 20% salinity after 8 days incubation, indicating that the work of consortium 5H was severely restricted at such a high salinity. Compared with previous studies, Wang et al. enriched a halophilic consortium CY-1 capable of degrading phenanthrene at salinities ranging from 1–15% (Wang et al., 2018). Consortium enriched by Sami et al. was identified able to degrade 41.2% PAHs in 6 days (Mnif et al., 2017). Halotolerant consortium enriched by Arulazhagan was able to degrade about 90% of PAHs in 22 days under 20% salinity (Pugazhendi et al., 2017). Consortium 5H showed a relative good tolerance to salinity variation, especially at 1–5% salinity, the degradation rate was rapid.
As shown in Fig. 5B, no significant degradation of PAHs occurred when pH adjusted to 5. When pH increased to 6 and 7, about 95% of phenanthrene was removed in 5 days. With the increased of pH, the degradation rate of PAHs was slight limited. About 88% and 68% of phenanthrene were degraded when pH increased to 8 and 9. Consortium 5H was identified with no degradation ability when pH increased to 10. Therefore, consortium 5H was suitable for the PAH-degradation under neutral and week alkaline environment.
Furthermore, consortium 5H degraded phenanthrene effectively over a broad range of initial concentrations. As shown in Fig. 5C, consortium 5H completely degraded 50mg/L phenanthrene in 4 days. The degradation rate was about 97.4% when consortium 5H cultured 8 days under 400mg/L initial phenanthrene concentration. When combined with the results of the metabolic pathway, the consortium was able to effectively mineralize PAHs while accumulating no biotoxic intermediates.
3.4 Phytotoxicity of metabolic intermediates produced by consortium 5H
PAHs was investigated with significant biotoxicity to crops (Somtrakoon and Chouychai, 2013). Therefore, it was necessary to evaluate the metabolic intermediates produced by consortium 5H. The biotoxicity of the metabolic intermediates in PAH-degrading process were measured 1, 3, 5 and 7 days after incubation and the result was shown in Table 2. The generation rate, length of plumule and radical of seeds (Cucumis sativus and Oryza sativa) that immersed in distilled water were used as the control. The results showed that as the degradation process progressed, the phytotoxicity of metabolic intermediates decreased. One day after incubation, the generated metabolic intermediates showed obvious phytotoxicity on both Cucumis sarivus and Oryza sativa seeds. With the incubation process, the biotoxicity level decreased. The phytotoxicity of intermediates showed no significant difference with the distilled water 7 days after cultivation, indicating that no biotoxic intermediate was accumulated 7 days after degradation. The biotoxicity in the metabolic intermediate showed similar trend with intermediate produced by phenanthrene treatment by laccase (Wulandari et al., 2021) and an azo dye decolorizing consortium reported by Guo et al (Guo et al., 2021). The phytotoxicity text results show that consortium 5H has an environmental friendly potential for PAH elimination in hypersaline environments.
Table 2
Phytotoxicity studies of the formed metabolites 1, 3, 5 and 7 days after incubation.
Parameter | Distill water | Metabolites |
1 day | 3 day | 5 day | 7 day |
Cucumis sativus | | | | | |
Germination (%) | 100 | 55 | 70 | 100 | 100 |
Plumule (cm) | 4.49 ± 0.42 | 2.50 ± 0.32** | 3.52 ± 0.30** | 4.29 ± 0.33 | 4.43 ± 0.46 |
Radical (cm) | 5.49 ± 0.39 | 2.83 ± 0.44** | 3.65 ± 0.51** | 4.58 ± 0.46** | 5.46 ± 0.36 |
Oryza sativa | | | | | |
Germination (%) | 100 | 60 | 70 | 95 | 100 |
Plumule (cm) | 3.58 ± 0.35 | 1.66 ± 0.49** | 2.67 ± 0.28** | 3.44 ± 0.37 | 3.63 ± 0.42 |
Radical (cm) | 2.58 ± 0.18 | 1.71 ± 0.29** | 1.97 ± 0.30** | 2.37 ± 0.23* | 2.67 ± 0.18 |
The number in each blank is the average ± standard deviation. |
** stands for the number with extremely significant difference with the control (P = 0.01). |
* stands for the number with significant difference with the control (P = 0.05). |