Bioinformatic analysis
The online databases Oncomine (https://www.oncomine.org/resource/login.html), TCGA (https://portal.gdc.cancer.gov/) and THPA (https://www.proteinatlas.org/) were applied to explore the expression level and clinical significance of PFKFB3 in CRC. Target miRNA prediction for PFKFB3 was performed by the TargetScan (http://www.targetscan.org/vert 72/) (19) and ONCOMIR (https://www.biosino.org/dbDEMC/index) websites. The expression and clinical data of miR-133a-3p were obtained from the TCGA-COAD dataset.
Cell culture
Five CRC cell lines (LDL1, LOVO, HT29, SW480, CaCO-2) and a normal human normal colonic epithelial cell line (NCM460) were obtained from the Chinese Academy of Sciences (Shanghai, China). All cell lines were cultured in DMEM medium (Thermo Fisher Scientific, USA) supplemented with 10% fetal bovine serum (Gibco, USA) and 1% penicillin, and incubated at 37℃and 5% CO2.
Cell transfection
The oligonucleotides of miR-133a-3p mimics, mimics control, miR-133a-3p inhibitor, control inhibitor, PFKFB3 overexpression vector and PFKFB3 siRNA were purchased from HIPPOBIO (China) were transfected into CRC cell line SW480 by Lipo2000 (ThermoFisher, USA) kit in accordance with instructions. After 24h of transfection, transfected cells were used for subsequent experiments.
Reverse transcription-quantitative polymerase chain reaction
Total RNA was isolated from cells using TRIzol kit (Life Technologies, USA). The cDNA was synthesized using PrimeScript™ RT Master Mix Kit for qPCR (TaKaRa, Japan) and miRNA First Strand cDNA Synthesis (Sangon Biotech, China) according to relevant protocols. miR-133a-3p, PFKFB3, KI67 and MMP9 mRNA levels were quantified using Power SYBR™ Green PCR Master (Invitrogen, USA) with StepOne Plus Realtime PCR system. U6 and Actin were used as an internal standard control for miRNA and mRNA detection, respectively. Primer sequences used in qRT-PCR were listed in Table 1. The relative expression of miR-133a-3p and PFKFB3 mRNA was presented by 2−ΔΔCt method. The experiment was repeated for three times.
Table 1 Primer sequences used in qRT-PCR
Gene
|
Primer sequence
|
miR-133a-3p
|
Foward
|
TTTGGTCCCCTTCAACCAGCTG
|
U6
|
Foward
|
ATTGGAACGATACAGAGAAGATT
|
|
Reverse
|
GGAACGCTTCACGAATTTG
|
PFKFB3
|
Foward
|
AAACTGACGCCTGTCGCTTA
|
|
Reverse
|
CCGGGAGCCTTTCATGTTTTG
|
KI67
|
Foward
|
ATGGAGAGGTGGCCAAGAAC
|
|
Reverse
|
TGTGTGGTCTGTGTGAGCTG
|
MMP9
|
Foward
|
GGTGATTGACGACGCCTTTG
|
|
Reverse
|
GGACCACAACTCGTCATCGT
|
Actin
|
Foward
|
GGACTTCGAGCAAGAGATGG
|
|
Reverse
|
AGCACTGTGTTGGCGTACAG
|
Western blot analysis
Total proteins were harvested after cells were lysed by RIPA lysis buffer, and protein concentration was assayed by BCA kit (Beyotime, China). After being denatured at a high temperature, proteins were isolated by sodium dodecyl sulfate-polyacrylamide gelelectrophoresis (SDS-PAGE) and transferred onto polyvinylidene fuoride membranes (PVDF; Millipore), which were then blocked with 5% skim milk for 2 h. Then the membranes were
incubated with primary antibodies overnight at 4℃. Rabbit anti-PFKFB3 (ET1705-66, 1:1000, HUABIO), rabbit anti-KI67 (ab16667, 1:1000, Abcam), rabbit anti-MMP9 (ab76003, 1:1000, Abcam) and mouse anti-β-Actin (EM21002, 1:5000, HUABIO) .antibodies were added and incubated at 4℃ overnight. Subsequently, the membranes were incubated with secondary antibody goat anti-mouse IgG (1:5000, D110058, BBI) and goat anti-rabbit IgG (1:5000, D110057, BBI). After culture for 2 h at room temperature, all protein bands were visualized using an enhanced chemiluminescence kit (GE Healthcare, USA).
Cell proliferation assay
The cell proliferation ability of SW480 cells was measured using the cell counting kit-8 assay (CCK-8) (MCE, USA ). Cells were counted and seeded into the 96-well plate with 3,000 cells/well, and then incubated with 5% CO2 at 37 ℃ for 72 h. The absorbance of cultured CRC cells was measured with the micro-plate reader at 450 nm after CCK-8 solution addition for 2 h.
Transwell invasion assay
The 24-well transwell chambers (Corning, NY, USA) with or without the Matrigel (Invitrogen) were used to perform the transwell assays. 1×105 SW480 cells were seeded into the upper chambers in serum-free medium, while the serum-supplied medium was added to the lower chamber in 24-well plates. After being cultured for 48 h at 37 ℃, the non-invaded cells were removed, while the invaded cells were stained with 0.1% crystal violet. Numbers of stained cells in the bottom chambers were assessed from five randomly selected fields, and the data were summarized from three individual experiments. The experiment was conducted for three times.
Luciferase reporter assay
To determine the binding relationship between miR-133a-3p and PFKFB3 3’-UTR, luciferase vectors pmirGLO (Promega, USA) fused with wild type (WT) SPN 3’-UTR or mutant (MUT) SPN 3’-UTR were established. These constructed vectors were cotransfected with miR-133a-3p mimic or mi-NC into SW480 cells using Lipofectamine 2000. Then, 48 h after transfection, the luciferase activity was detected using a dual-luciferase reporter assay system (Promega, United States).
Statistical analysis
All experiments were executed at least three independent times. The statistical data are presented as mean ± standard deviation and analyzed using GraphPad Prism 6.0 (CA, United States). Two-tailed Student’s t-tests were conducted to interpret the differences.. P value <0.05 was considered statistically significant.