Soil pollution is a big issue caused by anthropogenic activities. The spatial distribution of potentially toxic elements (PTEs) varies in most urban and peri-urban areas. As a result, spatially predicting the PTEs content in such soil is difficult. A total number of 115 samples were obtained from Frydek Mistek in the Czech Republic. Calcium(Ca), magnesium(Mg), potassium(K), and nickel (Ni) concentrations were determined using Inductively Coupled Plasma Optical Emission Spectroscopy. The correlation matrix between the response variable and the predictors revealed a satisfactory correlation between the elements. The prediction results indicated that support vector machine regression (SVMR) performed well although its estimated root mean square error (RMSE) (235.974) and mean absolute error (MAE) (166.946) were higher when compared with the other methods applied. Conversely, the hybridized model of empirical bayesian kriging -multiple linear regression (EBK-MLR) performed poorly as indicated by the measured coefficient of determination value below 0.1. The empirical bayesian kriging-support vector machine regression (EBK-SVMR) model was the best model, with low RMSE (95.479) and MAE (77.368) values and a high coefficient of determination (R2 = 0.637). EBK-SVMR modeling technique was visualized using self-organizing map. The clustered neurons of the hybridized model CakMg -EBK-SVMR component plane showed a diverse color pattern predicting the concentration of Ni in the urban and peri urban soil. The results proved that combining EBK and SVMR is an effective technique for predicting Ni concentrations in urban and peri-urban soil.