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Research Article
Visualizations of SARS-CoV-2 Genomes on Genomic Index Maps
Jeffrey Zheng
Key Laboratory of Quantum Information of Yunnan, Key Laboratory of Software Engineering of Yunnan, Yunnan University
Corresponding Author
ORCiD: https://orcid.org/0000-0003-4225-7077
License:
This work is licensed under a CC BY 4.0 License. Read Full License
Declarations:
Declarations
- The author has confirmed that a statement listing potential conflicts of interest or lack thereof is included in the text.
In this paper, comprehensive cases are visualized by {C1, C2, C3, C4} four modules of the MAS. Four sets of SARS-CoV-2 genomes with 20, 128, 381 and 1337 cases were processed to be represented as a series of genomic index maps in four entropies: combinatorial, integrated, mean and topological entropies, respectively. Typical samples and explanations are described. Multiple levels of hierarchical representations are illustrated.
Keywords
genomic index, combinatorial entropy, integrated entropy, mean entropy, topological entropy, visualization, clustering, feature analysis
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This is a preprint. It has not completed peer review.
Research Article
Visualizations of SARS-CoV-2 Genomes on Genomic Index Maps
Jeffrey Zheng
Key Laboratory of Quantum Information of Yunnan, Key Laboratory of Software Engineering of Yunnan, Yunnan University
Corresponding Author
ORCiD: https://orcid.org/0000-0003-4225-7077
Badges
Prescreen
This manuscript passed our Prescreen assessment
Complete author information
Appropriate declaration statements
Potential risks to human health
Prescreen
History
CURRENT STATUS: Posted
Version 3
Posted 08 Jan, 2021
No community comments so far
No comments provided
No comments provided
Metrics
Comments: 0
PDF Downloads: ...
HTML Views: ...
License:
This work is licensed under a CC BY 4.0 License. Read Full License
Declarations:
Declarations
- The author has confirmed that a statement listing potential conflicts of interest or lack thereof is included in the text.
In this paper, comprehensive cases are visualized by {C1, C2, C3, C4} four modules of the MAS. Four sets of SARS-CoV-2 genomes with 20, 128, 381 and 1337 cases were processed to be represented as a series of genomic index maps in four entropies: combinatorial, integrated, mean and topological entropies, respectively. Typical samples and explanations are described. Multiple levels of hierarchical representations are illustrated.
Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8
Figure 9
Figure 10
Figure 11
Figure 12
Figure 13
Figure 14
Figure 15
Figure 16
Figure 17
Figure 18
Figure 19
Figure 20
Due to technical limitations, full-text HTML conversion of this manuscript could not be completed. However, the manuscript can be downloaded and accessed as a PDF.