1. Bardner R, Fletcher K: Insect infestations and their effects on the growth and yield of field crops: a review. Bulletin of Entomological Research 1974; 64(1):141-160.
2. Deutsch CA, Tewksbury JJ, Tigchelaar M, Battisti DS, Merrill SC, Huey RB, Naylor RL: Increase in crop losses to insect pests in a warming climate. Science 2018; 361(6405):916-919.
3. Lombardo L: Genetic use restriction technologies: a review. Plant biotechnology journal 2014; 12(8):995-1005.
4. Mamta B, Rajam M: RNAi technology: a new platform for crop pest control. Physiology and Molecular Biology of Plants 2017; 23(3):487-501.
5. Agnihotri N: Pesticide consumption in agriculture in India-an update. Pesticide Research Journal 2000; 12(1):150-155.
6. Ikeda H, Nonomiya T, Usami M, Ohta T, Ōmura S: Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis. Proceedings of the National Academy of Sciences 1999; 96(17):9509-9514.
7. Bloomquist JR: Chloride channels as tools for developing selective insecticides. Archives of Insect Biochemistry and Physiology: Published in Collaboration with the Entomological Society of America 2003; 54(4):145-156.
8. Cully DF, Vassilatis DK, Liu KK, Paress PS, Van der Ploeg LH, Schaeffer JM, Arena JP: Cloning of an avermectin-sensitive glutamate-gated chloride channel from Caenorhabditis elegans. Nature 1994; 371(6499):707.
9. Bloomquist JR: Ion channels as targets for insecticides. Annual review of entomology 1996; 41(1):163-190.
10. de Faria DBG, Montalvão MF, de Souza JM, de Oliveira Mendes B, Malafaia G, de Lima Rodrigues AS: Analysis of various effects of abamectin on erythrocyte morphology in Japanese quails (Coturnix japonica). Environmental Science and Pollution Research 2018; 25(3):2450-2456.
11. Mörtl M, Kereki O, Darvas B, Klátyik S, Vehovszky Á, Győri J, Székács A: Study on soil mobility of two neonicotinoid insecticides. Journal of Chemistry 2016; 2016.
12. Maienfisch P, Angst M, Brandl F, Fischer W, Hofer D, Kayser H, Kobel W, Rindlisbacher A, Senn R, Steinemann A: Chemistry and biology of thiamethoxam: a second generation neonicotinoid. Pest Management Science 2001; 57(10):906-913.
13. Reisig DD, Herbert DA, Malone S: Impact of neonicotinoid seed treatments on thrips (Thysanoptera: Thripidae) and soybean yield in Virginia and North Carolina. Journal of economic entomology 2012; 105(3):884-889.
14. Afifi M, Lee E, Lukens L, Swanton C: Thiamethoxam as a seed treatment alters the physiological response of maize (Zea mays) seedlings to neighbouring weeds. Pest management science 2015; 71(4):505-514.
15. Khush GS: What it will take to feed 5.0 billion rice consumers in 2030. Plant molecular biology 2005; 59(1):1-6.
16. Wang J-R, Hu H, Wang G-H, Li J, Chen J-Y, Wu P: Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones. Molecular plant 2009; 2(4):823-831.
17. Campos L, Lisón P, López-Gresa MP, Rodrigo I, Zacarés L, Conejero V, Bellés JM: Transgenic tomato plants overexpressing tyramine N-hydroxycinnamoyltransferase exhibit elevated hydroxycinnamic acid amide levels and enhanced resistance to Pseudomonas syringae. Molecular Plant-Microbe Interactions 2014; 27(10):1159-1169.
18. Walters D, Meurer-Grimes B, Rovira I: Antifungal activity of three spermidine conjugates. FEMS Microbiology Letters 2001; 201(2):255-258.
19. Wang T-Z, Liu M, Zhao M-G, Chen R, Zhang W-H: Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing. BMC plant biology 2015; 15(1):131.
20. Liu J, Wang H, Chua NH: Long noncoding RNA transcriptome of plants. Plant biotechnology journal 2015; 13(3):319-328.
21. Deng P, Liu S, Nie X, Weining S, Wu L: Conservation analysis of long non-coding RNAs in plants. Science China Life Sciences 2018; 61(2):190-198.
22. Dykes IM, Emanueli C: Transcriptional and post-transcriptional gene regulation by long non-coding RNA. Genomics, proteomics & bioinformatics 2017; 15(3):177-186.
23. Wu HJ, Wang ZM, Wang M, Wang XJ: Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants. Plant Physiology 2013; 161(4):1875-1884.
24. Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, Garcia JA, Paz-Ares J: Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics 2007; 39(8):1033-1037.
25. Kovinich N, Kayanja G, Chanoca A, Riedl K, Otegui MS, Grotewold E: Not all anthocyanins are born equal: distinct patterns induced by stress in Arabidopsis. Planta 2014; 240(5):931-940.
26. Wang H, Fan W, Li H, Yang J, Huang J, Zhang P: Functional characterization of dihydroflavonol-4-reductase in anthocyanin biosynthesis of purple sweet potato underlies the direct evidence of anthocyanins function against abiotic stresses. PloS one 2013; 8(11):e78484.
27. Bernfur K, Rutsdottir G, Emanuelsson C: The chloroplast‐localized small heat shock protein Hsp21 associates with the thylakoid membranes in heat‐stressed plants. Protein Science 2017; 26(9):1773-1784.
28. Ruiz-Medrano R, Jimenez-Moraila B, Herrera-Estrella L, Rivera-Bustamante RF: Nucleotide sequence of an osmotin-like cDNA induced in tomato during viroid infection. Plant molecular biology 1992; 20(6):1199-1202.
29. Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C: The genomes of Oryza sativa: a history of duplications. PLoS biology 2005; 3(2):e38.
30. Qin Z, Wu J, Geng S, Feng N, Chen F, Kong X, Song G, Chen K, Li A, Mao L et al: Regulation of FT splicing by an endogenous cue in temperate grasses. Nat Commun 2017; 8:14320.
31. Li R, Tee C-S, Jiang Y-L, Jiang X-Y, Venkatesh PN, Sarojam R, Ye J: A terpenoid phytoalexin plays a role in basal defense of Nicotiana benthamiana against Potato virus X. Scientific reports 2015; 5:9682.
32. Elbarbary RA, Lucas BA, Maquat LE: Retrotransposons as regulators of gene expression. Science 2016; 351(6274):aac7247.
33. Lisch D: How important are transposons for plant evolution? Nature Reviews Genetics 2013; 14(1):49.
34. Ma Y, Li H, Lin B, Wang G, Qin M: C-glycosylflavones from the leaves of Iris tectorum Maxim. Acta Pharmaceutica Sinica B 2012; 2(6):598-601.
35. Zhou G, Wu H, Wang T, Guo R, Xu J, Zhang Q, Tang L, Wang Z: C-glycosylflavone with rotational isomers from Vaccaria hispanica (Miller) Rauschert seeds. Phytochemistry letters 2017; 19:241-247.
36. Du Y, Chu H, Chu IK, Lo C: CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis in rice. Plant physiology 2010; 154(1):324-333.
37. Uehling J, Deveau A, Paoletti M: Do fungi have an innate immune response? An NLR-based comparison to plant and animal immune systems. PLoS pathogens 2017; 13(10):e1006578.
38. Nordberg H, Cantor M, Dusheyko S, Hua S, Poliakov A, Shabalov I, Smirnova T, Grigoriev IV, Dubchak I: The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic acids research 2013; 42(D1):D26-D31.
39. Pertea M, Kim D, Pertea GM, Leek JT, Salzberg SL: Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nature protocols 2016; 11(9):1650.
40. Niknafs YS, Pandian B, Iyer HK, Chinnaiyan AM, Iyer MK: TACO produces robust multisample transcriptome assemblies from RNA-seq. Nature methods 2016; 14(1):68.
41. Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature protocols 2012; 7(3):562.
42. Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X: Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). New Phytologist 2015; 207(4):1181-1197.
43. Min XJ, Butler G, Storms R, Tsang A: OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic acids research 2005; 33(suppl_2):W677-W680.
44. Mukherjee S, Manna S, Mukherjee P, Panda CK: Differential alterations in metabolic pattern of the spliceosomal uridylic acid‐rich small nuclear RNAs (UsnRNAs) during malignant transformation of 20‐methylcholanthrene‐induced mouse CNCI‐PM‐20 embryonic fibroblasts. Molecular Carcinogenesis: Published in cooperation with the University of Texas MD Anderson Cancer Center 2009; 48(9):773-778.
45. Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, Gao G: CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic acids research 2007; 35(suppl_2):W345-W349.
46. Du Z, Zhou X, Ling Y, Zhang Z, Su Z: agriGO: a GO analysis toolkit for the agricultural community. Nucleic acids research 2010; 38(suppl_2):W64-W70.
47. Shen S, Park JW, Lu Z-x, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y: rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences 2014; 111(51):E5593-E5601.
48. Bonnet E, He Y, Billiau K, Van de Peer Y: TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics 2010; 26(12):1566-1568.
49. Saito R, Smoot ME, Ono K, Ruscheinski J, Wang P-L, Lotia S, Pico AR, Bader GD, Ideker T: A travel guide to Cytoscape plugins. Nature methods 2012; 9(11):1069.
50. Qin Z, Bai Y, Muhammad S, Wu X, Deng P, Wu J, An H, Wu L: Divergent roles of FT-like 9 in flowering transition under different day lengths in Brachypodium distachyon. Nat Commun 2019; 10(1):812.