All animal experimental procedures were approved by the Institutional Animal Care and Use Committee of the Korea Brain Research Institute (IACUC-2017-0047). All experiments were carried out in accordance with the approved guidelines and regulations.
Primary astrocyte culture
We utilized an AWESAM astrocyte culture protocol as reported previously 21 with minor modifications to acquire cultured astrocytes that had an in vivo-like morphology. Cortical astrocytes were prepared from embryos from wild-type C57BL/6 mice on days E17-18. Cortices were dissected in dissection medium (10 mM HEPES in HBSS) at 4°C and then incubated in 0.25% trypsin-EDTA in a 37°C water bath for 20 min with gentle inversion every 5 min. After trypsinization, the tissue was washed in dissection medium at 4°C five times and then triturated with 1 ml of NB + medium (2% B27 supplement, 2 mM GlutaMax, 5,000 U/ml penicillin and 5,000 µg/ml streptomycin in neurobasal medium). Dissociated cells were filtered through a cell strainer and plated on 0.04% polyethylenimine (PEI)-coated cell culture dishes (4 x 106 cells/60 mm dish) in culture media (10% FBS, 5,000 U/ml penicillin and 5,000 µg/ml streptomycin in DMEM). Seven days after plating the dissociated cells, the dishes were shaken at 110 rpm for 6 hours. The cells were then washed with 1x PBS three times, treated with 0.25% trypsin, and plated on 0.04% PEI-coated glass-bottom dishes (3 x 104 cells/dish) or 18 mm coverslips in a 12-well plate (1 x 104 cells/well) in NB + medium containing HBEGF (50 µg/ml).
Transfection of DNA and siRNAs
DNA and siRNA constructs were transfected into cultured astrocytes with Lipofectamine 2000 at 10–11 DIV according to the manufacturer’s protocol. To generate pCMV-TeLC-P2A-EYFP, TeLC-P2A-EYFP fragments were amplified from pAAV-hSyn-FLEX-TeLC-P2A-EYFP-WPRE (Addgene plasmid #135391) with a specific set of primers (Key Resources Table) and then subcloned into a pcDNA3.1 vector by using the HindIII-XhoI site.
To screen Vamp3 siRNA, C8-D1A (mouse type 1 astrocyte cell line) cells were cultured in DMEM supplemented with 10% FBS at 37°C under 5% CO2. Each siRNA (100 nM) was transfected into C8-D1A cells using RNAi Max according to the manufacturer’s protocol. Two days after transfection, samples were analyzed by western blotting with an anti-Vamp3 primary antibody or β-actin-HRP and HRP-conjugated anti-rabbit secondary antibody. The screening of Vamp3 siRNAs revealed that siVamp3 #1 effectively diminished the level of endogenous Vamp3 (Fig. S2). Therefore, only siVamp3 #1 was employed in the experiments.
TrkB-targeting shRNA lentiviral particles were purchased from Sigma (shRNA-pLKO.1-hPGK-puro-CMV-tGFP). The shRNA target sequences are described in the Key Resources Table. To assess the knockdown efficiency of TrkB shRNA, cortical neurons from E17-18 C57BL/6 mouse embryos were cultured. Each Lenti-shTrkB particle was transduced into cortical neurons at 5 DIV. Three days after transduction, total RNA was extracted using TRIzol reagent. Each RNA sample (0.3 µg) was reverse transcribed into cDNA by using SuperScript III reverse transcriptase. To determine the reduction in TrkB RNA levels, PCR was performed using TrkB and β-actin primers. Because shTrkB #1 reduced the level of endogenous TrkB more effectively than shTrkB #2 (Fig. S1), only shTrkB #1 was used in the experiments.
Immunocytochemistry
To determine the localization of QD-BDNF, cultured astrocytes were incubated with 2 nM QD-BDNF for 20 min and then fixed with 4% paraformaldehyde (PFA). For immunostaining, the cells were permeabilized with 0.1% Triton X-100 for 10 min and then blocked with 5% normal goat serum for 1 hour at room temperature. After blocking, the cells were incubated with anti-Rab5, anti-Rab7, anti-Rab11, anti-Lamp1, anti-Vamp3, or anti-chromograninB for 1 hour and then incubated with an anti-Alexa 488 secondary antibody for 1 hour at room temperature.
QD imaging
For monitoring endocytic BDNF, 50 nM biotinylated mature BDNF (bt-BDNF) or 50 nM biotinylated bovine serum albumin (bt-BSA) was incubated with 50 nM streptavidin-conjugated quantum dot 655 (st-QD655) at 4°C overnight at a ratio of 2:1. QD-BDNF or QD-BSA was then filtered with a 100 kDa Amicon filter to remove unconjugated mBDNF, BSA, or QDs, and 1% BSA containing PBS was added to the filtrates. Astrocytes were incubated with QD-BDNF or QD-BSA on 12–13 DIV, and the medium was then replaced with an extracellular solution (in mM; 119 NaCl, 2.5 KCl, 20 HEPES, 2 CaCl2, 30 glucose, and 2 MgCl2, pH 7.4) containing 4 µM QSY21. Time-lapse images were taken by using a confocal laser scanning microscope (TCS SP8, Leica) at a 1 Hz rate using a 63 X oil objective. ATP (100 µM) or ionomycin (1 µM)-containing extracellular solution was added to stimulate the astrocytes. QD655 fluorescence was excited with a 561 nm laser and assessed with a HyD (hybrid) detector in the range of 650–695 nm.
Image and statistical analyses
Image processing and analysis were performed using ImageJ/FIJI software (NIH, USA). To analyze the kinetics or secretion of BDNF particles, regions of interest (ROIs) of astrocytic processes were manually selected and linearized. The linearized time-lapse images were transformed into kymographs using the KymographBuilder plugin in ImageJ/FIJI. After extracting the X and Y coordinate data for each particle from the kymograph, the direction, distance, and velocity were determined.
Colocalization of QD-BDNF and endosomal markers was analyzed by using the Colocalization Threshold plugin in ImageJ/FIJI. To analyze the complexity of astrocytes induced by BDNF, the shape index (perimeter2/area – 4π) was utilized as described previously 12,22.
Statistical analyses were performed using Prism 8.0 software (GraphPad). Statistically significant differences between two groups were determined using Student’s unpaired t-test, and three or more groups were compared using one-way ANOVA with Dunnett’s multiple comparisons test. The Kolmogorov-Smirnov test was used to examine the statistical significance of the percentages of cumulative distribution between the two groups. All data were from three independent batches of cultured astrocytes and are indicated as the mean ± standard error of the mean (SEM).
Table 1
Reagent type or resources | Source or reference | Identifiers | Additional information |
Antibodies |
Rabbit polyclonal anti-Rab5 | Abcam | ab13253 | IF 1:200 |
Mouse monoclonal anti-Rab7 | Abcam | ab50533 | IF 1:200 |
Rabbit polyclonal anti-Rab11 | Santa Cruz Biotechnology | sc-9020 | IF 1:200 |
Rabbit polyclonal anti-Lamp1 | Abcam | ab24170 | IF 1:200 |
Rabbit polyclonal anti-chromograninB | Abcam | ab12242 | IF 1:400 |
Rabbit polyclonal anti-Vamp3 | Novus | NB300-510 | IB 1:5,000 IF 1:200 |
β-Actin (13E5) rabbit mAb (HRP- conjugated) | Cell Signaling Technology | 5125 | IB 1:10,000 |
HRP-conjugated anti-rabbit antibody | Bio-Rad | 1706515 | IB 1:10,000 |
Goat anti-mouse IgG (H + L) Alexa Fluor 488 | Thermo Fisher Scientific | A11029 | IF 1:200 |
Goat anti-rabbit IgG (H + L) Alexa Fluor 488 | Thermo Fisher Scientific | A11034 | IF 1:200 |
Goat anti-rabbit IgG (H + L) Alexa Fluor 568 | Thermo Fisher Scientific | A11011 | IF 1:200 |
Virus strains and DNA |
pLKO.1-puro eGFP shRNA control target sequence: TACAACAGCCACAACGTCTA | Sigma-Aldrich | SHC005V | |
shTrkB #1 (shRNA-pLKO.1-hPGK-puro-CMV-tGFP) target sequence: CATTCCAAGTTTGGCATGAAA | Sigma-Aldrich | SHCLNV-NM_008745 | TRCN0000023703 |
shTrkB #2 (shRNA-pLKO.1-hPGK-puro-CMV-tGFP) target sequence: CCACGGATGTTGCTGACCAAA | Sigma-Aldrich | SHCLNV-NM_008745 | TRCN0000023701 |
pEGFP-hVAMP3 | Addgene | 42310 | Gift from Thierry Galli |
pCMV-TeLC-P2A-EYFP | This paper | N/A | |
pCAG-EGFP | Addgene | 89684 | Gift from Wilson Wong |
Chemicals and solutions |
HEPES | Thermo Fisher Scientific | 15630080 | |
HBSS | Thermo Fisher Scientific | 14170112 | |
Trypsin-EDTA (0.25%), phenol red | Thermo Fisher Scientific | 25200056 | |
B-27™ Supplement (50X), serum-free | Thermo Fisher Scientific | 17504044 | |
Penicillin-streptomycin (5,000 U/mL) | Thermo Fisher Scientific | 15070063 | |
Neurobasal™ Medium | Thermo Fisher Scientific | 21103049 | |
Polyethylenimine (PEI) | Sigma-Aldrich | P3143 | |
Fetal bovine serum, ultra-low IgG | Thermo Fisher Scientific | 16250-078 | |
DMEM | HyClone | SH30243.01 | |
HBEGF | Sigma-Aldrich | E4643 | |
Lipofectamine 2000 | Thermo Fisher Scientific | 11668027 | |
Lipofectamine RNAiMax | Thermo Fisher Scientific | 13778100 | |
TRIzol™ LS Reagent | Thermo Fisher Scientific | 10296028 | |
SuperScript™ III Reverse Transcriptase | Thermo Fisher Scientific | 18080044 | |
Human BDNF-Biotin | Alomone Labs | B-250-B | |
Bovine serum albumin (BSA), biotinylated | Vector Laboratories | B-2007 | |
Qdot™ 655 streptavidin conjugate | Thermo Fisher Scientific | Q10121MP | |
QSY™ 21 carboxylic acid, succinimidyl ester | Thermo Fisher Scientific | Q20132 | |
4% Paraformaldehyde solution (PFA) | Biosesang | PC2031-100-00 | |
Normal goat serum | Jackson Immunoresearch | 005-000-121 | |
MitoTracker™ Red CMXRos | Thermo Fisher Scientific | M7512 | |
Mounting Medium with DAPI | Vector Laboratories | H-1200-10 | |
Adenosine 5′-triphosphate magnesium salt (ATP) | Sigma-Aldrich | A9187 | |
Ionomycin calcium salt | Sigma-Aldrich | I3909 | |
BAPTA-AM | Sigma-Aldrich | A1076 | |
Strains and Cell Lines |
Mouse: C57BL/6N | Koatech Co., Korea | N/A | |
Cell line: C8-D1A | ATCC | CRL-2541 | |
Oligonucleotides |
TeLC-P2A-EYFP forward: CCCAAGCTTGCCACCATGCCGATCACCATCAACAACT | This paper | N/A | For subcloning |
TeLC-P2A-EYFP reverse: CCGCTCGAGTTACTTGTACAGCTCGTCCATG |
siSCR-sense: UAAGGCUAUGAAGAGAUACUU | Ref. 18 | N/A | |
siSCR-antisense: AAGUAUCUCUUCAUAGCCUUA | |
siVamp3 #1-sense: CCAAGUUGAAGAGAAAGTAUU | TRC Library Database | TRCN0000110516 | https://portals.broadinstitute.org/gpp/public |
siVamp3 #1-antisense: AAUACUUUCUCUUCAACUUGG |
siVamp3 #2-sense: GUCAAUGUGGAUAAGGUGUUA | TRCN0000110517 |
siVamp3 #2-antisense: UAACACCUUAUCCACAUUGAC |
siVamp3 #3-sense: AGGUGCCUCGCAGUUUGAAAC | TRCN0000436473 |
siVamp3 #3-antisense: GUUUCAAACUGCGAGGCACCU |
siVamp3 #4-sense: UCAGUGUCCUGGUGAUCAUUG | TRCN0000311406 |
siVamp3 #4-antisense: CAAUGAUCACCAGGACACUGA |
TrkB-sense: GCGCTTCAGTGGTTCTACAA | This paper | N/A | For RT-PCR |
TrkB-antisense: TTGGGTTTGTCTCGTAGTC | Ref. 19 | N/A | |
β-actin-sense: TGTTACCAACTGGGACGACA | Ref. 20 | N/A | |
β-actin-antisense: GGGGTGTTGAAGGTCTCAAA | |
Software and Algorithms |
ImageJ | https://imageJ.nih.gov/ij | | |
Prism 8.0 | GraphPad | N/A | |
Others |
100 µm Cell strainer | BD Falcon | 352360 | |
Amicon Ultra-0.5 Centrifugal Filter Unit | Sigma-Aldrich | UFC510096 | |
Glass-bottom dish | SPL | 101350 | |
HRP, horseradish peroxidase; mAB, monoclonal antibody; HBSS, Hank’s Balanced Salt Solution; DMEM, Dulbecco’s Modified Eagle Medium; HBEGF, Heparin Binding EGF Like Growth Factor; DAPI, 4’,6-diamidino-2-phenylindole; BAPTA, 1,2-bis(o-aminophenoxy)ethane-N,N,N′,N′-tetraacetic acid; C8-D1A, mouse astrocyte type 1 clone cell line; TeLC, tetanus toxin light chain;