1. Smith-Vaniz WF, Kaufman LS, Glowacki J. Species-specific patterns of hyperostosis in marine teleost fishes. Mar Bio. 1995;121:573–580.
2. Fast MD, Sims DE, Burka JF, Mustafa A, Ross NW. Skin morphology and humoral non-specific defence parameters of mucus and plasma in rainbow trout, coho and Atlantic salmon. Comp Biochem Physiol A. 2002;132:645–657.
3. Assis CA. The lagenar otoliths of teleosts: their morphology and its application in species identification, phylogeny and systematics. J Fish Biol. 2003;62:1268–1295.
4. Liao C, Chen S, Guo Z, Ye S, Zhang T, Li Z, Murphy BR, Liu J. Species-specific variations in reproductive traits of three yellow catfish species (Pelteobagrus spp.) in relation to habitats in the Three Gorges Reservoir, China. PLoS One. 2018;13:7.
5. Van Rijssel JC, Moser FN, Frei D, Seehausen O. Prevalence of disruptive selection predicts extent of species differentiation in Lake Victoria cichlids. Proc R Soc Lond [Biol]. 2018; doi: 10.1098/rspb.2017.2630.
6. Martin MD, Mendelson TC. Male behaviour predicts trait divergence and the evolution of reproductive isolation in darters (Percidae: Etheostoma). Anim Behav. 2016;112:179–186.
7. Carlson BA. Differences in electrosensory anatomy and social behavior in an area of sympatry between two species of mormyrid electric fishes. J Exp Biol. 2016;219:31–43.
8. Kocher TD. Adaptive evolution and explosive speciation: The cichlid fish model. Nature Rev Genet. 2004;5:288–298.
9. Hopkins CD, Bass AH. Temporal Coding of Species Recognition Signals in an Electric Fish. Science. 1981; doi: 10.1126/science.7209524.
10. Kramer B, Kuhn B. Species recognition by the sequence of discharge intervals in weakly electric fishes of the genus Campylomormyrus (Mormyridae, Teleostei). Anim Behav. 1994;48:435–445.
11. Moller P. ‘Communication’ in weakly electric fish, Gnathonemus niger (Mormyridae): I. Variation of electric organ discharge (EOD) frequency elicited by controlled electric stimuli. Anim Behav. 1970;18:768–786.
12. Nagel R, Kirschbaum F, Hofmann V, Engelmann J, Tiedemann R. Electric pulse characteristics can enable species recognition in African weakly electric fish species. Sci Rep. 2018; doi: 10.1038/s41598-018-29132-z.
13. Nagel R, Kirschbaum F, Engelmann J, Hofmann V, Pawelzik F, Tiedemann R (2018) Male-mediated species recognition among African weakly electric fishes. R Soc open sci. 2018;5:170443.
14. Feulner PGD, Plath M, Engelmann J, Kirschbaum F, Tiedemann R. Electrifying love: electric fish use species-specific discharge for mate recognition. Biol Lett. 2008;5:225–8.
15. Bass AH. Species Differences in Electric Organs of Mormyrids: Substrates for Species-Typical Electric Organ Discharge Waveforms. J Comp Neurol. 1986;244:313–330.
16. Bennett MVL, Grundfest H. Bioelectrogenesis. In: Chagas C, Carvalho AP, editors. Studies on the morphology and electrophysiology of electric organs. III. Electrophysiology of electric organs in mormyrids. London - New York - Princeton: Elsevier; 1961. p. 113–135.
17. Gallant JR, Arnegard ME, Sullivan JP, Carlson BA, Hopkins CD. Signal variation and its morphological correlates in Paramormyrops kingsleyae provide insight into the evolution of electrogenic signal diversity in mormyrid electric fish. J Comp Physiol [A]. 2011;197:799–817.
18. Paul C, Mamonekene V, Vater M, Feulner PGD, Engelmann J, Tiedemann R, Kirschbaum F. Comparative histology of the adult electric organ among four species of the genus Campylomormyrus (Teleostei: Mormyridae). J Comp Physiol [A]. 2015;201:357–374.
19. Bass AH. Electric Organs Revisited: Evolution of a Vertebrate Communication and Orientation Organ. In: Bullock TH, Heiligenberg W, editors. Electroreception. New York: Wiley; 1986. p. 13–70.
20. Denizot JP, Kirschbaum F, Max Westby GW, Tsuji S. The larval electric organ of the weakly electric fish Pollimyrus (Marcusenius) isidori (Mormyridae, Teleostei). J Neurocytol. 1978;7:165–181.
21. Bennett MVL. Electric Organs. In: Hoar WS, Randall DJ, editors. Fish Physiology. New York: Academic Press. 1971. p. 347–491.
22. Tiedemann R, Feulner PGD, Kirschbaum F. Electric Organ Discharge Divergence Promotes Ecological Speciation in Sympatrically Occurring African Weakly Electric Fish (Campylomormyrus). In: Glaubrecht, M editors. Evolution in Action. Berlin - Heidelberg: Springer. 2010. p. 307-321.
23. Lamanna F, Kirschbaum F, Ernst ARR, Feulner PGD, Mamonekene V, Paul C, Tiedemann R. Species delimitation and phylogenetic relationships in a genus of African weakly-electric fishes (Osteoglossiformes, Mormyridae, Campylomormyrus). Mol Phylogenet Evol. 2016;101:8–18.
24. Freedman EG, Olyarchuk J, Marchaterre MA, Bass AH. A Temporal Analysis of Testosterone-Induced Changes in Electric Organs and Electric Organ Discharges of Mormyrid Fishes. J Neurobiol. 1989;20:619–634.
25. Bass AH, Denizot J, Marchaterre MA. Ultrastructural Features and Hormone‐Dependent Sex Differences of Mormyrid Electric Organs. J Comp Neurol. 1986;254:511–528.
26. Landsman RE, Moller P. Testosterone changes the electric organ discharge and external morphology of the mormyrid fish, Gnathonemus petersii (Mormyriformes). Experientia. 1988;44:900–3.
27. Bass AH, Hopkins CD. Hormonal control of sex differences in the electric organ discharge (EOD) of mormyrid fishes. J Comp Physiol [A]. 1985;156:587–604.
28. Zakon HH, Jost MC, Zwickl DJ, Lu Y, Hillis DM. Molecular evolution of Na+ channels in teleost fishes. Integr Zool. 2009;4:64–74.
29. Zakon HH, Lu Y, Zwickl DJ, Hillis DM. Sodium channel genes and the evolution of diversity in communication signals of electric fishes: Convergent molecular evolution. Proc Natl Acad Sci USA. 2006;103:3675–3680.
30. Nagel R, Kirschbaum F, Tiedemann R. Electric organ discharge diversification in mormyrid weakly electric fish is associated with differential expression of voltage-gated ion channel genes. J Comp Physiol [A]. 2017;203:183–195.
31. Paul C, Kirschbaum F, Mamonekene V, Tiedemann R. Evidence for Non-neutral Evolution in a Sodium Channel Gene in African Weakly Electric Fish (Campylomormyrus, Mormyridae). J Mol Evol. 2016;83:61–77.
32. Gratten J, Beraldi D, Lowder BV, McRae AF, Visscher PM, Pemberton JM, Slate J. Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep. Proc R Soc Lond [Biol]. 2007;274:619–626.
33. Hoekstra HE, Hirschmann RJ, Bundey RA, Insel PA, Crossland JP. A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern. Science. 2006;313:101–4.
34. Kamiya T, Kai W, Tasumi S, et al. A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu). PLoS Genet. 2012; doi: 10.1371/journal.pgen.1002798.
35. Swapna I, Ghezzi A, Markham MR, Halling DB, Lu Y, Gallant JR, Zakon HH. Electrostatic Tuning of a Potassium Channel in Electric Fish. Curr Biol. 2018;28:2094–2102.
36. Murgatroyd C. Impaired Repression at a Vasopressin Promoter Polymorphism Underlies Overexpression of Vasopressin in a Rat Model of Trait Anxiety. J Neurosci. 2004;24:7762–7770.
37. Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nature Rev Genet. 2009;10:155–9.
38. Shastry BS. SNPs: Impact on Gene Function and Phenotype. In: Komar A, editors. Single Nucleotide Polymorphisms: Methods in Molecular Biology (Methods and Protocols). Totowa - New York: Humana Press; 2009. p. 3-22.
39. Marguerat S, Bähler J. RNA-seq: from technology to biology. Cell Mol Life Sci. 2010;67:569–579.
40. Lamanna F, Kirschbaum F, Waurick I, Dieterich C, Tiedemann R. Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae). BMC Genomics. 2015; doi: 10.1186/s12864-015-1858-9.
41. Gallant JR, Hopkins CD, Deitcher DL. Differential expression of genes and proteins between electric organ and skeletal muscle in the mormyrid electric fish Brienomyrus brachyistius. J Exp Biol. 2012; doi: 10.1242/jeb.063222.
42. Güth R, Pinch M, Samanta MP, Chaidez A, Unguez GA. Sternopygus macrurus electric organ transcriptome and cell size exhibit insensitivity to short-term electrical inactivity. J Physiol (Paris). 2016;110:233–244.
43. Alves-Gomes JA, Hopkins CD. Molecular Insights into the Phylogeny of Momyriform Fishes and the Evolution of Their Electric Organs. Brain Behav Evol. 1997;49:324–351.
44. Roskoski Jr R. ERK1/2 MAP kinases: Structure, function, and regulation. Pharmacol Res. 2012;66:105–143.
45. He H, Zhu D, Sun J, Pei R, Jia S. The Novel Protein TSR2 Inhibits the Transcriptional Activity of Nuclear Factor-κB and Induces Apoptosis. Mol Biol. 2011;45:451–7.
46. Elgueta R, Benson MJ, Vries de VC, Noelle RJ. Molecular mechanism and function of CD40⁄CD40L engagement in the immune system. Immunol Rev. 2009;229:152–172.
47. Lecat A, Di Valentin E, Somja J, et al. The JNK-binding protein (JNKBP1) acts as a negative regulator of NOD2 signaling by inhibiting its oligomerization process. J Biol Chem. 2012; doi: 10.1074/jbc.M112.355545.
48. Mattson MP. NF-κB in the Survival and Plasticity of Neurons. Neurochem Res. 2005;30:883–893.
49. Mattson MP, Culmsee C, Yu Z, Camandola S. Roles of Nuclear Factor κB in Neuronal Survival and Plasticity. J Neurochem. 2000;74:443–456.
50. Zhang J, Chen H, Weinmaster G, Hayward SD. Epstein-Barr Virus BamHi-A Rightward Transcript-Encoded RPMS Protein Interacts with the CBF1-Associated Corepressor CIR To Negatively Regulate the Activity of EBNA2 and NotchIC. J Virol. 2001;75:2946–56.
51. Contreras-Cornejo H, Saucedo-Correa G, Oviedo-Boyso J, Valdez-Alarcón JJ, Baizabal-Aguirre VM, Cajero-Juárez M, Bravo-Patiño A. The CSL proteins, versatile transcription factors and context dependent corepressors of the notch signaling pathway. Cell Div. 2016;11:12.
52. Hsieh JJ, Zhou S, Chen L, Young DB, Hayward SD. CIR, a corepressor linking the DNA binding factor CBF1 to the histone deacetylase complex. Proc Natl Acad Sci USA. 1999;96:23–8.
53. Aguirre A, Rubio ME, Gallo V. Notch and EGFR pathway interaction regulates neural stem cell number and self-renewal. Nature. 2011;467:323–7.
54. Gaiano N, Fishell G. The Role of Notch in Promoting Glial and Neural Stem Cell Fates. Annu Rev Neurosci. 2002;25:471–490.
55. MacGrogan D, Luna-Zurita L, de la Pompa JL.Notch Signaling in Cardiac Valve Development and Disease. Birth Defects Res A. 2011;91:449–459.
56. Grego-Bessa J, Luna-zurita L, Monte G, et al. Notch Signaling is Essential for Ventricular Chamber Development. Dev Cell. 2007;12:415–429.
57. Wei Y, Li K, Yao S, et al. Loss of ZNF32 augments the regeneration of nervous lateral line system through negative regulation of SOX2 transcription. Oncotarget. 2016;7:43.
58. Dominguez-Salas P, Moore SE, Baker MS, et al. Maternal nutrition at conception modulates DNA methylation of human metastable epialleles. Nat Commun. 2014;5:3746.
59. Simeone P, Alberti S. Epigenetic heredity of human height. Physiol Rep. 2014;2:6.
60. Li Y, Zhang L, Li K, et al. ZNF32 inhibits autophagy through the mTOR pathway and protects MCF-7 cells from stimulus-induced cell death. Sci Rep. 2015; doi: 10.1038/srep09288.
61. Ishidate T, Ozturk AR, Durning DJ, Sharma R, Shen E, Chen H, Seth M, Shirayama M, Mello CC. ZNFX-1 Functions within Perinuclear Nuage to Balance Epigenetic Signals. Mol Cell. 2018;70:639–649.
62. Park JE, Lee DH, Lee JA, Park SG, Kim NS, Park BC, Cho S. Annexin A3 is a potential angiogenic mediator. Biochem Biophy Res Co. 2005;337:1283–7.
63. Luo Y, Blechingberg J, Fernandes AM, Li S, Fryland T, Børglum AD, Bolund L, Nielsen AL. EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions. BMC Genomics. 2015; doi: 10.1186/s12864-015-2125-9.
64. Nguyen L, Paul C, Mamonekene V, Bartsch P, Tiedemann R, Kirschbaum F. Reproduction and development in some species of the weakly electric genus Campylomormyrus (Mormyridae, Teleostei). Environ Biol Fish. 2017;100:49–68.
65. Hassin S, Claire M, Holland H, Zohar Y. Ontogeny of Follicle-Stimulating Hormone and Luteinizing Hormone Gene Expression During Pubertal Development in the Female Striped Bass, Morone saxatilis (Teleostei). Biol Reprod. 2005;61:1608–1615.
66. Rohlfing K, Stuhlmann F, Docker MF, Burmester T. Convergent evolution of hemoglobin switching in jawed and jawless vertebrates. BMC Evol Biol. 2016; doi: 10.1186/s12862-016-0597-0.
67. Terada K, Yomogida K, Imai T, Kiyonari H, Takeda N, Kadomatsu T, Yano M, Aizawa S, Mori M. A type I DnaJ homolog, DjA1, regulates androgen receptor signaling and spermatogenesis. EMBO J. 2005;24:611–622.
68. Azuma M, Embree LJ, Sabaawy H, Hickstein DD. Ewing Sarcoma Protein Ewsr1 Maintains Mitotic Integrity and Proneural Cell Survival in the Zebrafish Embryo. PLoS ONE. 2007;2:10.
69. Wittschieben J, Shivji MKK, Lalani E, Jacobs MA, Marini F, Gearhart P., Rosewell I, Stamp G, Wood RD. Disruption of the developmentally regulated Rev3l gene causes embryonic lethality. Curr Biol. 2010;10:1217–1220.
70. Rosen GD, Sanes JR, LaChance R, Cunningham JM, Roman J, Dean DC. Roles for the Integrin VLA-4 and Its Counter Receptor VCAM-1 in Myogenesis. Cell. 1992;69:1107–1119.
71. Meadows SM, Cleaver O. Annexin A3 Regulates Early Blood Vessel Formation. PLoS ONE. 2015;10:7.
72. Farber SA, De Rose RA, Olson ES, Halpern ME. The Zebrafish Annexin Gene Family. Genome Res. 2003;13:1082–1096.
73. Pasquier J, Cabau C, Nguyen T, et al. Gene evolution and gene expression after whole genome duplication in fish: The PhyloFish database. BMC Genomics. 2016;17:368.
74. Maqueen DJ, Johnson IA. Evolution of follistatin in teleost revealed trough phylogenetic, genomic and expression analysis. Dev Genes Evol. 2008; doi: 10.1007/s00427-007-0194-8.
75. Hofmann A, Raguénès-Nicol C, Favier-Perron B, Mesonero J, Huber R, Russo-Marie F, Lewit-Bentley A. The Annexin A3 - Membrane Interaction Is Modulated by an N-Terminal Tryptophan. Biochemistry. 2000;39:7712–7721.
76. Grabherr MG, Haas B, Yassour M, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29:644–652.
77. Simao FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015;31:3210–2.
78. Haas BJ, Papanicolaou A, Yassour M, et al. De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nat Protoc. 2013; doi: 10.1038/nprot.2013.084.De.
79. Emms DM, Kelly S. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol. 2015; doi: 10.1186/s13059-015-0721-2.
80. Goldman N, Löytynoja A. An algorithm for progressive multiple alignment of sequences with insertions. PNAS. 2005;102:30.
81. Noé L, Kucherov G. YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res. 2005;33:540–3.
82. Yang Z. PAML 4: Phylogenetic Analysis by Maximum Likelihood. Mol Biol Evol. 2007;24:1586–1591.
83. Zhang Z, Schwartz S, Wagner L, Miller W. A Greedy Algorithm for Aligning DNA Sequences. J Comput Biol. 2000;7:203–214.
84. Conesa A, Götz S, García-gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics Application Note. 2005;21:3674–6.
85. Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M. KAAS KEGG Automatic Annotation Server. 2007. www.genome.ip/kaas-bin/kaas_main. Accessed 10 Dec 2018.
86. Stone EA, Sidow A. Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity. Genome Res. 2005;15:978–986.
87. Keane JA, Page AJ, Delaney AJ, Taylor B, Seemann T, Harris SR, Soares J. SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments. Microb Genom. 2016;2:4.
88. Zhang Z, Li J, Zhao X, Wang J, Wong GK, Yu J. KaKs_Calculator : Calculating Ka and Ks Through Model Selection and Model Averaging. Genom Proteom Bioinf. 2006;4:259–263.
89. McCallum D, Layton K. Allto Market Research. https://www.allto.co.uk/tools/statistic-calculators/confidence interval-for-proportions-calculator/. Accessed 15 Dec 2018.