See the published version of this preprint at Mobile DNA.
This is a preprint, a preliminary version of a manuscript that has not completed peer review at a journal. Research Square does not conduct peer review prior to posting preprints. The posting of a preprint on this server should not be interpreted as an endorsement of its validity or suitability for dissemination as established information or for guiding clinical practice.
Learn more about In Review
Methodology
Robert Hubley
Institute for Systems Biology
Corresponding Author
ORCiD: https://orcid.org/0000-0001-9261-3821
License:
This work is licensed under a CC BY 4.0 License. Read Full License
The 3.0-3.2 releases of Dfam (https://dfam.org) represent an evolution from a proof-of-principle collection of transposable element families in model organisms into a community resource for a broad range of species and for both curated and uncurated datasets. In addition, releases since Dfam 3.0 provide auxiliary consensus sequence models, transposable element protein alignments, and a formalized classification system to support the growing diversity of organisms represented in the resource. The latest release includes 266,740 new de novo generated transposable element families from 336 species contributed by the EBI. This expansion demonstrates the utility of many of Dfam’s new features and provides insight into the long term challenges ahead for improving de novo generated transposable element datasets.
Keywords
Element Families, Sequence Models, Genome Annotations
Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8
Loading...
Badges
Prescreen
This manuscript passed our Prescreen assessment
Complete author information
Appropriate declaration statements
Potential risks to human health
Prescreen
Peer Review Timeline
CURRENT STATUS: Published
View the published article at Mobile DNA.
Version 1
Posted 17 Sep, 2020
No community comments so far
Editorial decision: Minor revision
On 19 Oct, 2020
Review #2 received
Received 18 Oct, 2020
Review #1 received
Received 01 Oct, 2020
Reviewer #3 agreed
On 21 Sep, 2020
Reviewer #1 agreed
On 17 Sep, 2020
Reviewer #2 agreed
On 17 Sep, 2020
Reviewers invited
Invitations sent on 14 Sep, 2020
Editor assigned
On 11 Sep, 2020
First submitted
On 10 Sep, 2020
Submission checks complete
On 10 Sep, 2020
Editor invited
On 10 Sep, 2020
Metrics
Comments: 0
PDF Downloads: ...
HTML Views: ...
Subject Areas
Systems Biology
Learn more about our company.
See the published version of this preprint at Mobile DNA.
This is a preprint, a preliminary version of a manuscript that has not completed peer review at a journal. Research Square does not conduct peer review prior to posting preprints. The posting of a preprint on this server should not be interpreted as an endorsement of its validity or suitability for dissemination as established information or for guiding clinical practice.
Learn more about In Review
Methodology
Robert Hubley
Institute for Systems Biology
Corresponding Author
ORCiD: https://orcid.org/0000-0001-9261-3821
Badges
Prescreen
This manuscript passed our Prescreen assessment
Complete author information
Appropriate declaration statements
Potential risks to human health
Prescreen
Peer Review Timeline
CURRENT STATUS: Published
View the published article at Mobile DNA.
Version 1
Posted 17 Sep, 2020
No community comments so far
Editorial decision: Minor revision
On 19 Oct, 2020
Review #2 received
Received 18 Oct, 2020
Review #1 received
Received 01 Oct, 2020
Reviewer #3 agreed
On 21 Sep, 2020
Reviewer #1 agreed
On 17 Sep, 2020
Reviewer #2 agreed
On 17 Sep, 2020
Reviewers invited
Invitations sent on 14 Sep, 2020
Editor assigned
On 11 Sep, 2020
First submitted
On 10 Sep, 2020
Submission checks complete
On 10 Sep, 2020
Editor invited
On 10 Sep, 2020
Metrics
Comments: 0
PDF Downloads: ...
HTML Views: ...
Subject Areas
Systems Biology
License:
This work is licensed under a CC BY 4.0 License. Read Full License
View the published article at Mobile DNA.
The 3.0-3.2 releases of Dfam (https://dfam.org) represent an evolution from a proof-of-principle collection of transposable element families in model organisms into a community resource for a broad range of species and for both curated and uncurated datasets. In addition, releases since Dfam 3.0 provide auxiliary consensus sequence models, transposable element protein alignments, and a formalized classification system to support the growing diversity of organisms represented in the resource. The latest release includes 266,740 new de novo generated transposable element families from 336 species contributed by the EBI. This expansion demonstrates the utility of many of Dfam’s new features and provides insight into the long term challenges ahead for improving de novo generated transposable element datasets.
Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8
Loading...