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Construction of a Visual Network Map on the Target Collection of Chemical Components of schizandrin A
The chemical composition structure, canonical SMILES and 2D structure (stored in SDF file format) of schizandrin A were obtained from the Pubchem database (https://pubchem.ncbi.nlm.nih.gov/). Then, the canonical SMILES was sent to the Swiss Target Prediction Database (http://www.swisstargetprediction.ch/) to obtain the predicted targets of schisandrin A. As the same time, to ensure the completeness of targets collection, we used TTD database (Therapeutic Target Database, https://en.wikipedia.org/wiki/therapeutic-targets-database), CTD database (Comparative Toxicogenomics Database, http://ctdbase.org/), SEA database, BATMAN-TCM database and PharmMapper database (http://59.78.96.61/pharmmapper/) to collect the targets, and obtained more target genes of schisandrin A by means of literature search.
The target gene information were normalized using the Uniprot database (https://www.uniprot.org/) after removing duplicated genes.
2.2 Target collection and screening of bronchial asthma
Using "asthma" as the keyword in the GeneCards database (http://www.genecards.org/) and the OMIM database (Online Mendelian Inheritance in Man, http://www.omim.org/), asthma related target genes were acquired. The resulting target genes were combined, de-duplicated, and then normalized for target gene information using the Uniport database.
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Construction of protein-protein interaction (PPI) network and acquisition of core targets of schizandrin A in the treatment of bronchial asthma
The intersection target genes between schisandrin A and asthma were obtained by using Venny plot analysis (v2.1, http://bioinfogp.cnb.csic.es/tools/venny/index.html). The obtained intersection target genes were uploaded to the STRING database (https://string-db.org/) to obtain the protein-protein interaction (PPI) network, the species was defined as “Homo sapiens”, and TSV file was saved. The PPI network was visualized using the Cytoscape (version 3.6.2) software, and the topological analysis of the PPI network was carried out by using the NetworkAnalyzer plugin for Cytoscape, thereby obtaining the topology indices of the network such as degree, betweeness centrality, closeness centrality, and average path length. Then, the hub genes from the PPI network were selected using the MCC algorithm of the cytoHubba plugin.
2.4 GO functional enrichment and KEGG of core targets
For functional enrichment analysis of the intersection target genes, we carried out Gene Ontology (GO) functional enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis using the DAVID database (the Database for Annotation, Visualization and Integrated Discovery, http://david.abcc.ncifcrf.gov/). Furthermore, the results were screened using P value < 0.05, and the top ranked results were visualized.
2.5 Cell cultures
Human bronchial epithelial cell line (16 HBE) and murine macrophage cell line (RAW264.7) were purchased from Modification Type Culture Collection (ATCC, USA) and cultured in high glucose Dulbecco's Eagle's Medium (H-DMEM) medium supplemented with 10% fetal bovine serum (FBS) and 1% double antibody (penicillin and streptomycin) at 37 ℃ in a humidified 5% CO2 incubator.
2.6 16 HBE and RAW264.7 cells grouping and treatment
Plating was performed when growth was good and cells were confluent to approximately 80% – 90%. 16 HBE cells were seeded in 12-well plates at 1.5 × 105 cells/ml, and divided into five groups: control, D. pteronyssinus (HDM), HDM + schisandrin A (1 µM), HDM + schisandrin A (5 µM) and HDM + schisandrin A (10 µM). When the cells were 70–80% confluent, the medium was changed with serum-free medium for 12 h. After 12h, different concentrations of schisandrin A (1, 5 and 10 µM, Baoji Herbest Bio-tech, China) were added for 0.5h. Then, HDM (50 µg/ml, Greer Laboratories, NC) was added for 24 hours, and then harvested for protein extraction. Meanwhile, RAW264.7 cells were seeded in 12-well plates at 2.0 × 105 cells/ml, and divided into five groups: control, lipopolysaccharide (LPS), LPS + schisandrin A (1 µM), LPS + schisandrin A (5 µM) and LPS + schisandrin A (10 µM). After culturing overnight, different concentrations of schisandrin A (1, 5 and 10 µM) were added for 0.5 h, followed by LPS (250 ng/mL, Sigma-AldrichChina, China) for 24 h, and then harvested for protein extraction. For immunofluorescence, 16 HBE cells or RAW264.7 cells were seeded on coverslips in 6-well plates, and handled with the same procedure described above. The concentration of schisandrin A used was 10 µM.
2.7 Western blot assay
Total protein lysates were extracted from each group of cells using ice-cold RIPA lysis buffer. The protein concentration of each sample was determined by BCA kit. The supernatant of each sample was boiled with 1/4 volume of boiling 5x loading buffer in a metal bath at 100 ℃ for 5 min. For loading, a 20 mug total protein per sample was calculated and loaded onto sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), followed by wet transfer to a PVDF membrane. The membrane was blocked with 5% Bovine Serum Albumin (BSA, Sangon, China) 1 h at room temperature; primary antibodies were used: anti-iNOS (1:1000), anti-COX-2 (1:1000), anti-p-p65 (1:1000), anti-p65 (1:1000), anti-E-cadherin (1:1000), anti-β-catenin (1:1000), and anti-GAPDH (1:1000), overnight at 4℃. All antibodies were purchased from Abcam (USA). Then, the corresponding secondary antibodies (1:4000) were added for 1 h at room temperature. Gray scale expression of protein bands was analyzed by Image J analysis software, and relative protein expression was obtained using GAPDH as the corresponding pair internal reference.
2.8 Immunofluorescence
Cells cultured on glass slides were fixed with 4% paraformaldehyde for 20 min, permeabilized with 0.5% Triton X-100 for 15 min, and then blocked with goat serum for 1 h at room temperature. Primary antibodies: anti-E-cadherin (1:200), anti-β-catenin (1:200), and anti-COX-2 (1:200) were added dropwise and incubated overnight at 4℃. Then, the cells were incubated with corresponding fluorescent secondary antibody (1:1000) for 1 h at room temperature in the dark. DAPI was used for nuclear staining for 10min. Immunofluorescence photography was performed using a super-resolution confocal microscope.
2.9 Animals
BALB/c male mice (8–12 weeks, 18–22 g) were obtained from the Laboratory Animal Center of Guangdong Medical University. Before the experiment, the mice were kept in a standard laboratory animal facility for 1 week. All mouse experiments were approved by the Institutional Animal Care and Use Committee of Guangdong Medical University.
2.10 OVA-induced asthma mouse model and drug treatment
The mice were randomly divided into three groups: control group, OVA group and OVA + schisandrin A (OVA + Sch A) group (n = 7 per group). On days 0, 8, and 15, the OVA and OVA + Sch A groups were sensitized with an intraperitoneal injection (i.p.) of 0.2 ml of sensitizing solution containing 50 µg of ovalbumin (OVA, Sigma, USA), 100 ul of aluminum hydroxide (Thermo Scientific Pierce, USA) and 100 µl of saline. The control group was replaced with an equal volume of normal saline. Then, using an ultrasonic nebulizer (Omron Automation) on days 16–22, the mice in OVA and OVA + Sch A groups were airway challenged with 3% OVA solution (dissolved in PBS) for 30 min each time. The control group inhaled PBS instead. The OVA + Sch A group was intraperitoneal injection with schisandrin A (40 mg/kg, in 0.5% carboxymethylcellulose sodium aqueous solution) half an hour before nebulization, and the control and OVA groups were orally administered with an equal volume of carboxymethylcellulose sodium solution.
2.11 Blood collection and flow cytometry
Anesthetized mice were bled by retro-orbital puncture using heparinized capillary tube. Blood samples were placed in heparin sodium treated EP tubes, centrifuged at 3000 g for 5 min at 4 ℃, and the supernatant was discarded. The cells were re-suspended in RPMI 1640 medium containing 50 ng/mL phorbol 12-myristate 13-acetate (PMA) and 1 µg/mL ionomycin, mixed well and cultured for 5 h in the 37 ℃ and 5% CO2 incubator. Cell pellets were treated with 1X red blood cell lysis buffer for 10 min on ice to remove any red blood cells and washed once with PBS. The cells were incubated with Fc-receptor blocking antibody (anti-CD16/32, Biolegend, USA) to reduce non-specific binding. Subsequently, the cells stained with the FITC anti-mouse CD3, PE anti-mouse CD4, Alexa fluor 700 anti-mouse CD8a and Brilliant Violet 650 anti-mouse CD25 antibodies for 20 minutes at 4 ℃ in the dark. Then, the cells were fixed and permeabilized, and further stained with PE anti-mouse IL-4 and PerCP/Cyanine5.5 anti-mouse IFN-γ antibodies for 20 minutes at 4 ℃ in the dark. All antibodies were purchased from BioLegend (USA). The percentages of CD3 + CD4 + IFN-γ Th1 and CD3 + CD4 + IL-4 + Th2 cells were detected through flow cytometry.
2.12 Collection and processing of bronchoalveolar lavage fluid (BALF)
Twenty-four hours after the last OVA inhalation, mice were sacrificed after anesthesia by pentobarbital (50 mg/kg i.p.). BALF was collected three times from each mouse by endotracheal intubation with 0.8 ml of ice-cold PBS. Cell numbers were counted using a hemocytometer. In order to distinguish differential cells, BALF was centrifuged at 800g for 5 min using a centrifuge, and the supernatant was taken, resuspended with 100 ul PBS for precipitation, and dropped onto a glass slide. The cells were fixed with fixative and stained with Wright-Giemsa staining solution. 200 white blood cells were read under the microscope. The number of various white blood cells was counted and the percentage of various white blood cells were calculated.
2.13 Lung tissue staining
Lung tissue samples were made from the left lung which were harvested and fixed in 10% neutral formalin, dehydrated, embedded in paraffin. Lung tissues were cut into 5µm paraffin sections. The paraffin embedded tissue sections were baked at 60 ° C for 1 hour, deparaffinized and rehydrated in xylene and graded ethanol solutions. Hematoxylin and eosin (H & E) staining was used to determine inflammatory cell infiltration and periodic acid Schiff (PAS) was used to evaluate mucus production.
2.14 Immunohistochemistry
After baking, deparaffinization, and hydration, paraffin sections were microwaved in citrate buffer (pH 6.0) for 10 min, followed by cooling at room temperature. 5% goat serum was added dropwise to block the sections for 20 min at room temperature, and then α-SMA primary antibody (1:400, Abcam, USA) was incubated overnight at 4 ° C. Next, the corresponding secondary antibody was incubated for 1 hour at room temperature after 3 washes with PBS for 5min. The sections were developed with diaminobenzidine solution (DAB) for 7 min, counterstained by hematoxylin for 2min, mounted, and visualized under a microscope.
2.15 Data Presentation and Statistical Analysis
All ata was presented as means ± standard deviation (SD) of three independent experiments and analyzed by two-tailed Student t-test or one-way analysis of variance (ANOVA), followed by Tukey tests for multiple comparisons, when appropriate (p < 0.05 was considered as statistically significant).