Cell culture
Human bronchial epithelial cells(16HBE)were purchased from China Center for Type Culture Collection, was cultured with Dulbecco's Modified Eagle Medium (DMEM, Gibco, USA) in an incubator at 37°C containing 5% CO2. Besides, the culture medium contains 10% fetal bovine serum (FBS, Gibco, USA) and 1% penicillin-streptomycin antibiotics (PSA, Hyclone, USA).
Virus culture
hMPV was successfully recovered from full-length cDNA clones of hMPV NL/1/00 by reverse genetics as described previously. Because the phenomenon of cytopathic (CPE) is difficult to observe, we used PCR to detect viral titers to replace the virus strength. hMPV was cultured with Vero E6 cells, when the cytopathic lesion reached 80%, the cells-virus mixture were frozen-thaws to release the virus particles and centrifuged at 4000rpm with 10min, the virus particles were suspended in medium and maintained as stocks at 80 ℃. A standard curve was drawn by double dilution of the standard hMPV F gene plasmid to detect the absolute quantification of viruses. Experimental group of viral RNA was extracted by using viral RNA extraction kit (Magen, China) and reverse transcribed into cDNA (Takara, Japan) for detection. Primer sequences designed with the conserved region of hMPV F gene
Forward primer sequence: GAGCAATAGCACTCGGTGTTG;
Reverse primer sequence: TCACAAATCTTTCAGCTCTCTCAC;
Probe sequence: TTGCCAACACACGAACTCCATCCC.
The reaction program was 95°C for 30s, 40 cycles of 95°C for 5s and 60°C for 30s.
Antibodies and reagents
The following primary antibodies were used: rabbit anti-LC3 (L7543), rabbit anti-GAPDH (5174T), rabbit anti-SAPK/ JNK (9252T), rabbit anti-p SAPK/JNK (4668T), rabbit anti-ERK1/2 (4695T), rabbit anti-p ERK1/2 (437 0T), the following secondary antibody horse radish peroxidase (HRP)-conjugated goat anti -rabbit (7074P2), all these antibodies were purchased from Cell Signaling Technology. The mouse anti-metapneumovirus (ab 94804) is purchased from Abcam. The following regents: rapamycin (Rap, R0395), 3-methyladenine (3-MA, M9281), SP600125 (S5567) were purchased from Sigma-Aldrich. PD98059 (167869-21-8) was obtained from Selleck.
Immunofluorescent LC3 plasmid
LC3 is an important marker of autophagy, LC3II can accumulate on the membranes of autophagy precursors, autophagosomes and autophagy lysosome, so examining LC3II puncta can reflect the number of intracellular autophagic vesicles to assess the level of autophagy. Green fluorescence is easily degraded after autophagosome and lysosome fusion, but red fluorescence will not be disappeared, so double fluorescently labeled plasmid GFP-RFP-LC3II can directly reflect autophagy activity and autophagy flux. When autophagy was induced, both green and red fluorescence increased. The GFP-RFP-LC3 plasmid was given by BI Yang teacher. Plasmid was transfected with Lipofectamine 2000 (lip2000, 11668-027, Invitrogen) for 24h and observed under the fluorescence microscope. The control group was changed with medium (virus preservation solution) without hMPV, the virus treatment group was infected with hMPV and incubated in 37℃. Confocal microscope was used to observe the GFP-RFP-LC3 plasmid fluorescence expression in 6h and 24h respectively.
Small interference experiments.
The following siRNA was designed:
siRNA-LC3 (sense, 5'-CUCCCUAAGAGGAUCUUUATT-3'; antisense, 5'-UAAAGAUCCUCUUAGGGAGTT-3'), the siRNA was designed by the Gene Pharma Company (Suzhou, China) and used to silence the expression of LC3 gene in 16HBE cells. The cells were transfected with different concentrations of siRNA using Lip2000 reagent according to the manufacturer's protocol and were harvested for further analysis after 24h, Western Blot was used to verify the silence efficiency of siRNA-LC3.
RNA detection by PCR.
We used RT-PCR to detect the expression of autophagy-related genes ATG5, ATG7, Beclin1 and the titer of hMPV. The same amount of 16HBE cells and the same weight of lung tissue were extracted from Ra Pure Total RNA Kit (Magen, R4011) according to the manufacturer. Prime Script TM RT reagent Kit (Takara, RR037A) was used to reverse the RNA into cDNA by following the procedures. We used SYBR (Qiagen, 216213) to semi-quantitatively detect the expression of related genes. The reaction program was 95°C for 2 min, 39 cycles of 95°C for 5s and 60°C for 10s. The primer sequence of ATG5, ATG7, Beclin1 were synthesized by Shanghai Shenggong Bioengineering Co, Ltd. These two reactions were conducted in a CFX96 Fluorescence Thermocycler (Bio-Rad, USA), and the data were analyzed with Bio-Rad CFX Manager software.
Western blot
Whole cell lysates were performed using RIPA lysis buffer (Beyotime, P0013B), 1 mM phenylmethanesulfonyl fluoride (PMSF, Beyotime, ST506–2) and protease phosphatase inhibitor mixture (Beyotime, P1045) in accordance with the manufacturer’s protocol, which was performed on ice. Protein was extracted with the mixture and freeze at -80° for concentration determination. The protein concentration was measured using protein concentration assay kit (Beyotime, P0012S), protein denaturation using loading buffer 5X (Beyotime, P0015), SDS-gel configuration kit (Beyotime, P0012A). Protein loading per well is 30-60ug, after electrophoresis, the protein and other masses were transferred to a nitrocellulose membrane, blocked with 5% skim milk powder at 37° for 1h, washed three times with TBST, and the antibody was diluted with 5% skim milk powder at 4°, 60 rpm, overnight to incubate primary antibody. The secondary antibody was diluted with 2.5% skim milk powder, incubated at 37 ° for 1 h, washed three times with TSBS, and exposure with Millipore Immobilon ECL
Confocal microscopy
Cells were cultured on confocal four-plates. About plasmid transfection experiments, the plasmid GFP-RFP-LC3 and lip2000 were diluted with serum-free medium at room temperature for 15min. Then transferred to cells for 6 h allow the plasmid entered cells, and replaced with fresh medium at 37℃ 5% CO2. Stable expression of transfected cell lines infected with hMPV, then observe the fluorescence expression of the cells under confocal microscopy. For LC3 immunofluorescence staining, when the cells were fused to 60%-70%, infected with hMPV for 4 h, then cells were fixed in paraformaldehyde, and washed three times with PBS. Triton-X used to transparent (Sigma, Germany) for 15 min, 1% BSA blocked for 30 min, rabbit anti-LC3B Polyclonal Antibody (bs-2912R, Bioss) was incubated for 1h at 37°, the second antibody was incubated for 1 h, we added anti-fluorescence quencher to prevent fluorescence quenching and take a photograph with Nikon AIR confocal microscope.
Animal experiment.
6-8 week old female BALB/c mice were purchased from the Experimental Animal Center of Chongqing Medical University and housed for three days prior to the experiment in a biosafety containment facility under the same conditions. Acclimated for three days and randomly divided into two groups, five in each group. BALB/c mice were anesthetized with 10% chloral hydrate, the airway of the mice was fully opened. The control group was given 10µl saline into both nostrils and the virus group treated with 10µl 10^9 hMPV virus. When the mice wheezed or coughed, patted the back and observed for 2-4 h. No abnormalities in the mice after waking up proved that the experimental treatment was successful. The mice were anesthetized by intraperitoneal injection with 10% chloral hydrate (2.5 ml/kg body weight) and sacrificed by cervical dislocation in five days after nasal drops, lung tissue was taken. 20 mg of the left lung was used for protein extraction, added with RIPA (Biyuntian) and used Qiagen tissuelyser II to grind tissue with 25HZ/10min. Take the supernatant after centrifugation, the supernatant was mixed with loading buffer and boiled, -80 °C preservation. 10 mg of the left lung was used for RNA extraction, added with RNA extraction lysate and grind in the above manner, the supernatant was extracted according to the instructions (Magen single-package RNA extraction kit), and the Takara kit was used to reverse into cDNA, -4 °C preservation. 10% formalin fixed the right upper lobe tissue for at least 24h. After fixation, put it into the embedding box and wash it overnight, embed it in paraffin, cut the tissue into 4μm thick slices, and observe the lungs pathological changes under the microscope after HE staining.
The experiment was repeated, and data were pooled.
Statistical analysis
Statistical evaluations were used the Student t test, P < 0.05 was considered statistically significant.