1. Kim HK, Fuchs G, Wang S, Wei W, Zhang Y, Park H, Roy-Chaudhuri B, Li P, Xu J, Chu K et al: A transfer-RNA-derived small RNA regulates ribosome biogenesis. Nature 2017, 552(7683):57-62.
2. Xie Y, Yao L, Yu X, Ruan Y, Li Z, Guo J: Action mechanisms and research methods of tRNA-derived small RNAs. Signal Transduct Target Ther 2020, 5(1):109.
3. Shi J, Zhang Y, Zhou T, Chen Q: tsRNAs: The Swiss Army Knife for Translational Regulation. Trends Biochem Sci 2019, 44(3):185-189.
4. Schorn AJ, Gutbrod MJ, LeBlanc C, Martienssen R: LTR-Retrotransposon Control by tRNA-Derived Small RNAs. Cell 2017, 170(1):61-71 e11.
5. Su Z, Wilson B, Kumar P, Dutta A: Noncanonical Roles of tRNAs: tRNA Fragments and Beyond. Annu Rev Genet 2020, 54:47-69.
6. Zou H, Wu LX, Tan L, Shang FF, Zhou HH: Significance of Single-Nucleotide Variants in Long Intergenic Non-protein Coding RNAs. Front Cell Dev Biol 2020, 8:347.
7. Telonis AG, Magee R, Loher P, Chervoneva I, Londin E, Rigoutsos I: Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types. Nucleic Acids Res 2017, 45(6):2973-2985.
8. Kumar P, Mudunuri SB, Anaya J, Dutta A: tRFdb: a database for transfer RNA fragments. Nucleic Acids Res 2015, 43(Database issue):D141-145.
9. Tao EW, Wang HL, Cheng WY, Liu QQ, Chen YX, Gao QY: A specific tRNA half, 5'tiRNA-His-GTG, responds to hypoxia via the HIF1alpha/ANG axis and promotes colorectal cancer progression by regulating LATS2. J Exp Clin Cancer Res 2021, 40(1):67.
10. Goodarzi H, Liu X, Nguyen HC, Zhang S, Fish L, Tavazoie SF: Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement. Cell 2015, 161(4):790-802.
11. Yu M, Lu B, Zhang J, Ding J, Liu P, Lu Y: tRNA-derived RNA fragments in cancer: current status and future perspectives. J Hematol Oncol 2020, 13(1):121.
12. Bien J, Lin A: A Review of the Diagnosis and Treatment of Metastatic Colorectal Cancer. JAMA 2021, 325(23):2404-2405.
13. Siegel RL, Miller KD, Goding Sauer A, Fedewa SA, Butterly LF, Anderson JC, Cercek A, Smith RA, Jemal A: Colorectal cancer statistics, 2020. CA Cancer J Clin 2020, 70(3):145-164.
14. Zou H, Wen C, Peng Z, Shao Y, Hu L, Li S, Li C, Zhou HH: P4HB and PDIA3 are associated with tumor progression and therapeutic outcome of diffuse gliomas. Oncol Rep 2018, 39(2):501-510.
15. La Ferlita A, Alaimo S, Veneziano D, Nigita G, Balatti V, Croce CM, Ferro A, Pulvirenti A: Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer. Database (Oxford) 2019, 2019.
16. Chan PP, Lowe TM: GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. Nucleic Acids Res 2016, 44(D1):D184-189.
17. Hutter C, Zenklusen JC: The Cancer Genome Atlas: Creating Lasting Value beyond Its Data. Cell 2018, 173(2):283-285.
18. Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M et al: NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res 2013, 41(Database issue):D991-995.
19. Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL: TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 2013, 14(4):R36.
20. Anders S, Pyl PT, Huber W: HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics 2015, 31(2):166-169.
21. Liao Y, Smyth GK, Shi W: featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 2014, 30(7):923-930.
22. Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot TS, Malta TM, Pagnotta SM, Castiglioni I et al: TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Res 2016, 44(8):e71.
23. Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK: limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 2015, 43(7):e47.
24. Zou H, Wu LX, Yang Y, Li S, Mei Y, Liu YB, Zhang L, Cheng Y, Zhou HH: lncRNAs PVT1 and HAR1A are prognosis biomarkers and indicate therapy outcome for diffuse glioma patients. Oncotarget 2017, 8(45):78767-78780.
25. Wickham H: ggplot2 : Elegant Graphics for Data Analysis. In: Use R!,. 2nd edn. Cham: Springer International Publishing : Imprint: Springer,; 2016: 1 online resource (XVI, 260 pages 232 illustrations, 140 illustrations in color.
26. Peng Z, Chen Y, Cao H, Zou H, Wan X, Zeng W, Liu Y, Hu J, Zhang N, Xia Z et al: Protein disulfide isomerases are promising targets for predicting the survival and tumor progression in glioma patients. Aging (Albany NY) 2020, 12(3):2347-2372.
27. Liberzon A, Birger C, Thorvaldsdottir H, Ghandi M, Mesirov JP, Tamayo P: The Molecular Signatures Database (MSigDB) hallmark gene set collection. Cell Syst 2015, 1(6):417-425.
28. Yu G, Wang LG, Han Y, He QY: clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 2012, 16(5):284-287.
29. Li N, Shan N, Lu L, Wang Z: tRFtarget: a database for transfer RNA-derived fragment targets. Nucleic Acids Res 2021, 49(D1):D254-D260.
30. Veneziano D, Tomasello L, Balatti V, Palamarchuk A, Rassenti LZ, Kipps TJ, Pekarsky Y, Croce CM: Dysregulation of different classes of tRNA fragments in chronic lymphocytic leukemia. Proc Natl Acad Sci U S A 2019, 116(48):24252-24258.
31. Wu X, Zhao J, Ruan Y, Sun L, Xu C, Jiang H: Sialyltransferase ST3GAL1 promotes cell migration, invasion, and TGF-beta1-induced EMT and confers paclitaxel resistance in ovarian cancer. Cell Death Dis 2018, 9(11):1102.
32. Mo D, Jiang P, Yang Y, Mao X, Tan X, Tang X, Wei D, Li B, Wang X, Tang L et al: A tRNA fragment, 5'-tiRNA(Val), suppresses the Wnt/beta-catenin signaling pathway by targeting FZD3 in breast cancer. Cancer Lett 2019, 457:60-73.