Human lung samples
All lung tissues were obtained from surgical resections at Yixing people hospital affiliated Jiangsu University. This study was approved from the institutional review boards (IRBs) at the Yixing People’s Hospital. The informed consent obtained from all subjects was confirmed. IPF was diagnosed in accordance with the criteria of the American Thoracic Society and European Respiratory Society (1). These IPF patients included 3 female patients and 3 male patients, and the average age was 52±11 years. Control samples were from 2 female and 4 male patients with average age 47±18 years. All tissue samples were immediately frozen in liquid nitrogen and kept at -80 °C.
Quantitative real-time RT-PCR
Total RNA from frozen tissues was isolated using Trizol reagent (Life Technologies, USA) according to the manufacturer’s instruction. Quantitative real-time RT-PCR was performed using SYBR Green (Takara, China) on a Real-Time Quantitative Thermal Block (Biometra, Germany). The integrity of 300ng RNA was used to each assay. Primer sequences used for C/EBPβ were forward, 5'-GCCTCTCCACGTCCTCCTCGT-3', and reverse, 5'-CGCTGTGCTTGTCCACGGTCT-3'. Primer sequences used for the internal control of GAPDH were forward, 5'-CACCTTCACCGTTCCAGTTT-3', and reverse, 5'-CTCTTCCAGCCTTCCTTCCT-3'. The reactions were carried out at 95 °C for 30 s, then 94°C for 45 s, 60°C for 45 s, and 35 cycles of 72 °C for 5 min, and a final extension at 72 °C for 10 min. Determination of C/EBPβ mRNA was normalized to GAPDH as controls.
Immunohistochemistry
Four percent paraformaldehyde-fixed, paraffin-embedded blocks of lung tissues were cut into 4‐μm sections. After deparaffinating, rehydration and retrieval, tissues were incubated with an antibody against C/EBPβ (Santa Cruz, USA) overnight at 4°C. After being washed by PBST 3 times with each 15 minutes, the sections were incubated with the corresponding second antibody at room temperature for 1 hour. The results were visualized with diaminobenzidine. Positive signals showing brown were diagnosed by glycerin mount preparations.
Western Blot
After being separated on 10% SDS-PAGE gels, the proteins were transferred to PVDF membranes and then blocked with 5% nonfat milk in TBST. The time of incubating with primary antibody is overnight at 4°C. Primary antibodies against α-SMA and Collagen I were purchased from Abcam. Antibodies against C/EBPβ were purchased from Santa Cruz. Membranes were incubated with appropriate secondary antibodies. The chemiluminescence signal captured on X-ray film and quantified by Quantity One software was developed by ECL detection kit.
Co-Immunoprecipitation
Protein samples were immunoprecipitated with either polyclonal antibody against C/EBPβ (Santa Cruz, USA) or control IgG (Santa Cruz, USA) at 4°C overnight. Then samples were constantly agitated with A/G-agarose beads (Santa Cruz, USA) at 4°C for 4h. After being washed 5 times with buffer, beads were prepared to exact proteins. Proteins from deposits with lysate were used for Western Blot as above. Antibodies used in the experiments were Acetylated-Lysine Antibody (Santa Cruz, USA)and α-SMA (Abcam, United Kingdom).
Statistical analysis
These data were presented as the Mean ± SEM. Differences between groups were calculated by one‐way ANOVA analysis with SPSS software. A value of P < 0.05 was considered statistically significant.