Epitope position | Wild type and variant epitope sequences | Subtype identified for epitope | Predicted HLA | Participants |
PR (68–76) | GKKAIGTVL E…………… …..R……….. ……...M…… | Subtype B and C | B*15:03; B*13:02; C*02 | 3469, 8047, 6743 |
RT (139–149) | TPGIRYQYNVL ………………I.. ………………..F | Subtype C | B*81:01; B*81 | 6737, 261, 9049 |
RT (243–251) | PIQLPEKDS ………….E. …………...N | Subtype C | Not reported | 6737, 6743 |
RT (268–277) | SQIYPGIKVR …….S……… …………….N | Subtype C | A*74:01 | 6743, 6638 |
RT (485–493) | ALQDSGLEV ……N……… | Subtype B | A*02:01; A*02 | 8047, 6743 |
RT (516–525) | ELVNQIIEQL ……K……… ………...V…. …………K… | Not reported | A*02 | 9049, 8047, 6743 |
IN (20–28) | RAMASDFNL K……………. …….V……… | Not reported | A*02:01; A*02 | 6582, 3469, 6743 |
IN (123–131) | SAAVKAACW ..T…………… ……M………. ………….S…. | Subtype C | B*58:01 | 7084, 9049, 8047, 6743 |
IN (135–146) | IQQEFGIPYNPQ .H……………… …………..H…... | Subtype C | B*15:03 | 2504, 8047 |
IN (213–220) | LQKQITKI ……...V…. ……….I…. | Subtype B | B*52:01 | 9049, 8047, 8575 |
IN (263–271) | RKAKIIKDY …….R…….. ………..R…. | Subtype C | B*15:03 | 9049, 8047, 8575 |
Chronic HIV infection |
Epitope position | Wild type and variant epitope sequences | Subtype identified for epitope | Predicted HLA | Participants |
PR (11–20) | VTIKIGGQLK ………..D…… …………...M.. | Subtype B and C | A*03:01; A*11:01 | 6990, 641, 3253, 3910, 3912, 3920, |
PR (30–38) | DTVLEEMNL ……….D…… | Subtype A and B | A*68:02; A*28; A*68 | 3253, 6565, 9986 |
PR (34–42) | EEINLPGKW ……...V.…… | Subtype A, C and D | A*11; A*68; B*08 | 843, 3880 |
PR (42–50) | WKPKMIGGI …R…………. …….R……… | Subtype B | Cw3 | 6649, 6990, 1121, 1475, 3253 |
PR (56–66) | VRQYDQIPIEI F……………… ………A……… | Subtype B | B*13 | 6649, 3253, 3920, 3935, 6565 |
PR (68–76) | GKKAIGTVL …..Q……….. ………V…… | Subtype B and C | B*15; B*15:03; B*13:02; C*02 | 3253, 3910, 3869, 5054, 9986 |
PR (80–90) | TPVNIIGRNML ……………..L.. ……………….M | Subtype C | B*81:01; B*81 | 1475, 3253, 3910, 3920, 5054, 6596 |
PR (91–99) | TQIGCTLNF ...L………… ……..G…… | Subtype B and C | B*15:01; B*15:03 | 639, 1475, 3253, 9986 |
PR (99)-RT (8) | FPISPIETVP ……T……… ………R…... ………….I… | Subtype B | B*54:01 | 6649, 641, 843, 1121, 1475, 3253, 3935, 2678 |
RT (57–66) | NTPVFAIKKK ……….T…….. | Subtype B and C | A*11; A*68; B*08 | 6649, 3253 |
RT (73–82) | KLVDFRELNK E……………… | Subtype A, B, C and D | A*03:01; A*34; A*29; B*18; B*80 | 641, 3910, 3869, 6565 |
RT (105–113) | SVTVLDVGD ..A………….. | Subtype B | Not reported | 843, 3920, 3935 |
RT (113–120) | DAYFSVPL …..C……… ………..S… | Subtype C | A*24; B*51:01; B*51 | 1475, 3253 |
RT (118–127) | VLPDEGFRKY …………S…… | Subtype C | B*35:01; B*35:02; B*42:01 | 1121, 8828 |
RT (136–144) | NNETPGIRY ...E………… …………L... ………….K.. | Subtype C | B*18:01; B*18 | 6649, 1475, 3869, 3920 |
RT (149–159) | LPQGWKGSPAI ………….R……. ……………….S. | Subtype C | B*39:10; B*42:01 | 3253, 3910, 9986 |
RT (159–167) | IFQSSMTKIL ……………F. | Subtype A, B and C | Not reported | 843, 5054 |
RT (171–181) | FRAQNPEIVIY ……H………… ……...H………. …………K…… ……………D… ……………..T.. | Not reported | Not reported | 6649, 843, 1475, 3253, 3474, 3869, 3920, 3935, 5054 |
RT (181–189) | YQYMDDLYV ………………I | Subtype A, B, C and D | A*02:01; A*02 | 641, 6565 |
RT (192–202) | DLEIGQHRTKI G……………… ……P………… ……………V… ………………V | Subtype B | A*03 | 6649, 6990, 1121, 3920, 3935, 6596, 8828 |
RT (203–212) | EELREHLLKW K……………... ..K……………. ……K………... ……..R………. | Subtype C | B*44:03 | 6990, 1121, 3253, 3474, 3869, 3920, 3935, 6565, 6509, 7959 |
RT (233–241) | ELHPDRWTV ……..N…….. ………K…… | Subtype B and C | Not reported | 641, 1121, 3912, 3935, 6565 |
RT (240–248) | TVQPIVLPE ……A…….. ………Q….. | Subtype B | Not reported | 6649, 3474 |
RT (304–312) | AENREILKE ……K…….. ……….T…. | Subtype B | Not reported | 843, 3253, 3910 |
RT (317–327) | VYYDPSKDLIA …….S………… ……...S………. ……….T……... …………...E…. ………………V. | Subtype C | Not reported | 6990, 1121, 1475, 3253, 3910, 3935 |
RT (329–339) | IQKQGQGQWTY K………………... ……….N……….. | Subtype B | B*39:01 | 5054, 6565, 3387, 6509 |
RT (340–352) | QIYQEPFKNLKTG ..V………………… ………S………….. ……………….R… | Subtype B | A*11; A*11:01 | 641, 843, 1475, 3474, 3910, 6380 |
RT (356–366) | KMRTAHTNDVK ...R………………. …..K…………….. …….E…………… ………………..A.. | Subtype B | A*03:01; A*03 | 6649, 6990, 641, 1121, 1475, 3253, 3920, 5054, 9986 |
RT (367–375) | QLTEAVHKI ……..V……. …………R... | Subtype C | Not reported | 3880, 6565, 8828 |
RT (375–383) | IAMESIVIW ….I……….. ……G……. ………..M... | Subtype B and C | B*53:01; B*35:08; B*57:02; B*57:03; B*58:01; C*12 | 6990, 639, 3912, 3935 |
RT (379–388) | SIVIWGKTPK ………….G… ……………R | Subtype B | A*11:01 | 3880, 6990, 843, 1121, 3474, 3920, 3935, 9986 |
RT (397–406) | TWETWWTEYW …..G…………… | Subtype B | B*44 | 6640, 1121, 3912, 3920 |
RT (416–425) | FVNTPPLVKL ...I…………… ……………T.. | Subtype C | B*07 | 641, 3253, 3935, 7959 |
RT (432–441) | EPIAGAETFY ..L…………… …M………… …..V……….. …………...Y. | Subtype C | B*35:01 | 641, 843, 3910, 3869, 5054, 6509, 7959 |
RT (448–457) | RETKIGKAGY ……R………. ……..V…….. ………..R…... | Subtype B | A*29 | 843, 1121, 3253, 3869, 3920, 3935, 9986 |
RT (461–469) | KGRQKIVTL R…………… ……….M….. ………….I… …………..A.. | Subtype B | B*08:01 | 1121, 1475, 3910, 3920, 3935, 9986, 6509, 7959, 9854 |
RT (468–476) | SLETTNQK …………..R | Subtype C | A*74:01 | 6640, 6990, 1475, 6509, 7959 |
RT (477–486) | TELQAIQLAL …....R………. | Subtype C | B*18:01 | 641, 843, 3910 |
RT (491–501) | SEVNIVTDSQY ……..V……….. ………M……... | Subtype C | B*44:03 | 3880, 6649, 6565 |
RT (509–518) | QPDKSESELV ……...G…….. | Subtype A, B, C and D | B*07 | 1121, 3869 |
RT (519–527) | NQIIEQLIKK S……………. ………….Q... | Subtype B | Not reported | 6640, 6649, 843, 3869, 5054, 8828, 9986 |
RT (526–534) | IKKEKIYLA …...K……… ………V…... …………...T | Subtype B | Not reported | 6649, 641, 3920, 3935, 9986 |
RT (550–559) | KLVSQGIRKV R…………….. ……N………. | Subtype A, B, C and D | A*02:01 | 639, 1121, 3869, 9986 |
IN (22–31) | MASDFNLPPIV …….E………… ………….S…… ……………..M.. ……………….E | Not reported | A*02 | 6649, 641, 843, 1121, 1475, 3910, 3869, 3920, 3935, 4351, 5054, 6565 |
IN (33–43) | AKEIVASCDKC …..K………….. ………………..R | Not reported | Not reported | 6649, 6990, 3253, 3920, 2678 |
IN (68–76) | LEGKIILVA ………..I…. | Subtype B | B*40:06 | 6990, 639, 3253 |
IN (78–86) | HVASGYIEA E…………… …..T……….. ……T……… | Subtype B | B*54:01 | 1121, 3935, 6565 |
IN (101–105) | ILKLAGRWPVK A………………. …..A…………... ………………..R | Subtype C | A*03:01 | 1121, 1475, 3474, 3869, 5054, 2678 |
IN (114–123) | HTDNGSNFTS ………..I…….. | Subtype B | Cw*05 | 1121, 3869 |
IN (123–132) | SAAVKAACWW ..T……………… ….T……………. ……………R….. | Subtype C | B*58:01 | 3880, 641, 843, 3935, 8828 |
IN (135–143) | IQQEFGIPYNPQ …………...C…... …………….Y… | Subtype C | B*15:03 | 1475, 6565 |
IN (164–172) | QVRDQAEHL ...M…………. …..L………… …….E……… | Subtype C | A*02:05 | 3869, 3920 |
IN (185–194) | FKRKGGIGGY ….K…………. ……...R……… | Subtype A, B and C | B*15:03; B*27:05; C*01 | 3920, 3935 |
IN (206–213) | TDIQTKEL ...E……….. …T…….. ……….D.. | Subtype B | B*40:02 | 3935, 6380, 6565 |
IN (213–220) | LQKQITKI ……H…… ……….L... | Subtype B | B*52:01 | 843, 1475 |
IN (241–250) | LLWKGEGAVV ……………...M.. | Not reported | A*02:01 | 6640, 641 |
IN (259–268) | VPRRKVKII ……G…….. ………..A… | Subtype B and C | B*08:01 | 843, 3253, 3910, 3912, 5054 |
IN (278–288) | DDCVAGRQDED ………...S………. ……………….D.. …………………N | Not reported | Not reported | 3253, 3910, 3935, 8828 |