Epitope position
|
Wild type and variant epitope sequences
|
Subtype identified for epitope
|
Predicted HLA
|
Participants
|
PR (68–76)
|
GKKAIGTVL
E……………
…..R………..
……...M……
|
Subtype B and C
|
B*15:03; B*13:02; C*02
|
3469, 8047, 6743
|
RT (139–149)
|
TPGIRYQYNVL
………………I..
………………..F
|
Subtype C
|
B*81:01; B*81
|
6737, 261, 9049
|
RT (243–251)
|
PIQLPEKDS
………….E.
…………...N
|
Subtype C
|
Not reported
|
6737, 6743
|
RT (268–277)
|
SQIYPGIKVR
…….S………
…………….N
|
Subtype C
|
A*74:01
|
6743, 6638
|
RT (485–493)
|
ALQDSGLEV
……N………
|
Subtype B
|
A*02:01; A*02
|
8047, 6743
|
RT (516–525)
|
ELVNQIIEQL
……K………
………...V….
…………K…
|
Not reported
|
A*02
|
9049, 8047, 6743
|
IN (20–28)
|
RAMASDFNL
K…………….
…….V………
|
Not reported
|
A*02:01; A*02
|
6582, 3469, 6743
|
IN (123–131)
|
SAAVKAACW
..T……………
……M……….
………….S….
|
Subtype C
|
B*58:01
|
7084, 9049, 8047, 6743
|
IN (135–146)
|
IQQEFGIPYNPQ
.H………………
…………..H…...
|
Subtype C
|
B*15:03
|
2504, 8047
|
IN (213–220)
|
LQKQITKI
……...V….
……….I….
|
Subtype B
|
B*52:01
|
9049, 8047, 8575
|
IN (263–271)
|
RKAKIIKDY
…….R……..
………..R….
|
Subtype C
|
B*15:03
|
9049, 8047, 8575
|
Chronic HIV infection
|
Epitope position
|
Wild type and variant epitope sequences
|
Subtype identified for epitope
|
Predicted HLA
|
Participants
|
PR (11–20)
|
VTIKIGGQLK
………..D……
…………...M..
|
Subtype B and C
|
A*03:01; A*11:01
|
6990, 641, 3253, 3910, 3912, 3920,
|
PR (30–38)
|
DTVLEEMNL
……….D……
|
Subtype A and B
|
A*68:02; A*28; A*68
|
3253, 6565, 9986
|
PR (34–42)
|
EEINLPGKW
……...V.……
|
Subtype A, C and D
|
A*11; A*68; B*08
|
843, 3880
|
PR (42–50)
|
WKPKMIGGI
…R………….
…….R………
|
Subtype B
|
Cw3
|
6649, 6990, 1121, 1475, 3253
|
PR (56–66)
|
VRQYDQIPIEI
F………………
………A………
|
Subtype B
|
B*13
|
6649, 3253, 3920, 3935, 6565
|
PR (68–76)
|
GKKAIGTVL
…..Q………..
………V……
|
Subtype B and C
|
B*15; B*15:03; B*13:02; C*02
|
3253, 3910, 3869, 5054, 9986
|
PR (80–90)
|
TPVNIIGRNML
……………..L..
……………….M
|
Subtype C
|
B*81:01; B*81
|
1475, 3253, 3910, 3920, 5054, 6596
|
PR (91–99)
|
TQIGCTLNF
...L…………
……..G……
|
Subtype B and C
|
B*15:01; B*15:03
|
639, 1475, 3253, 9986
|
PR (99)-RT (8)
|
FPISPIETVP
……T………
………R…...
………….I…
|
Subtype B
|
B*54:01
|
6649, 641, 843, 1121, 1475, 3253, 3935, 2678
|
RT (57–66)
|
NTPVFAIKKK
……….T……..
|
Subtype B and C
|
A*11; A*68; B*08
|
6649, 3253
|
RT (73–82)
|
KLVDFRELNK
E………………
|
Subtype A, B, C and D
|
A*03:01; A*34; A*29; B*18; B*80
|
641, 3910, 3869, 6565
|
RT (105–113)
|
SVTVLDVGD
..A…………..
|
Subtype B
|
Not reported
|
843, 3920, 3935
|
RT (113–120)
|
DAYFSVPL
…..C………
………..S…
|
Subtype C
|
A*24; B*51:01; B*51
|
1475, 3253
|
RT (118–127)
|
VLPDEGFRKY
…………S……
|
Subtype C
|
B*35:01; B*35:02; B*42:01
|
1121, 8828
|
RT (136–144)
|
NNETPGIRY
...E…………
…………L...
………….K..
|
Subtype C
|
B*18:01; B*18
|
6649, 1475, 3869, 3920
|
RT (149–159)
|
LPQGWKGSPAI
………….R…….
……………….S.
|
Subtype C
|
B*39:10; B*42:01
|
3253, 3910, 9986
|
RT (159–167)
|
IFQSSMTKIL
……………F.
|
Subtype A, B and C
|
Not reported
|
843, 5054
|
RT (171–181)
|
FRAQNPEIVIY
……H…………
……...H……….
…………K……
……………D…
……………..T..
|
Not reported
|
Not reported
|
6649, 843, 1475, 3253, 3474, 3869, 3920, 3935, 5054
|
RT (181–189)
|
YQYMDDLYV
………………I
|
Subtype A, B, C and D
|
A*02:01; A*02
|
641, 6565
|
RT (192–202)
|
DLEIGQHRTKI
G………………
……P…………
……………V…
………………V
|
Subtype B
|
A*03
|
6649, 6990, 1121, 3920, 3935, 6596, 8828
|
RT (203–212)
|
EELREHLLKW
K……………...
..K…………….
……K………...
……..R……….
|
Subtype C
|
B*44:03
|
6990, 1121, 3253, 3474, 3869, 3920, 3935, 6565, 6509, 7959
|
RT (233–241)
|
ELHPDRWTV
……..N……..
………K……
|
Subtype B and C
|
Not reported
|
641, 1121, 3912, 3935, 6565
|
RT (240–248)
|
TVQPIVLPE
……A……..
………Q…..
|
Subtype B
|
Not reported
|
6649, 3474
|
RT (304–312)
|
AENREILKE
……K……..
……….T….
|
Subtype B
|
Not reported
|
843, 3253, 3910
|
RT (317–327)
|
VYYDPSKDLIA
…….S…………
……...S……….
……….T……...
…………...E….
………………V.
|
Subtype C
|
Not reported
|
6990, 1121, 1475, 3253, 3910, 3935
|
RT (329–339)
|
IQKQGQGQWTY
K………………...
……….N………..
|
Subtype B
|
B*39:01
|
5054, 6565, 3387, 6509
|
RT (340–352)
|
QIYQEPFKNLKTG
..V…………………
………S…………..
……………….R…
|
Subtype B
|
A*11; A*11:01
|
641, 843, 1475, 3474, 3910, 6380
|
RT (356–366)
|
KMRTAHTNDVK
...R……………….
…..K……………..
…….E……………
………………..A..
|
Subtype B
|
A*03:01; A*03
|
6649, 6990, 641, 1121, 1475, 3253, 3920, 5054, 9986
|
RT (367–375)
|
QLTEAVHKI
……..V…….
…………R...
|
Subtype C
|
Not reported
|
3880, 6565, 8828
|
RT (375–383)
|
IAMESIVIW
….I………..
……G…….
………..M...
|
Subtype B and C
|
B*53:01; B*35:08; B*57:02; B*57:03; B*58:01; C*12
|
6990, 639, 3912, 3935
|
RT (379–388)
|
SIVIWGKTPK
………….G…
……………R
|
Subtype B
|
A*11:01
|
3880, 6990, 843, 1121, 3474, 3920, 3935, 9986
|
RT (397–406)
|
TWETWWTEYW
…..G……………
|
Subtype B
|
B*44
|
6640, 1121, 3912, 3920
|
RT (416–425)
|
FVNTPPLVKL
...I……………
……………T..
|
Subtype C
|
B*07
|
641, 3253, 3935, 7959
|
RT (432–441)
|
EPIAGAETFY
..L……………
…M…………
…..V………..
…………...Y.
|
Subtype C
|
B*35:01
|
641, 843, 3910, 3869, 5054, 6509, 7959
|
RT (448–457)
|
RETKIGKAGY
……R……….
……..V……..
………..R…...
|
Subtype B
|
A*29
|
843, 1121, 3253, 3869, 3920, 3935, 9986
|
RT (461–469)
|
KGRQKIVTL
R……………
……….M…..
………….I…
…………..A..
|
Subtype B
|
B*08:01
|
1121, 1475, 3910, 3920, 3935, 9986, 6509, 7959, 9854
|
RT (468–476)
|
SLETTNQK
…………..R
|
Subtype C
|
A*74:01
|
6640, 6990, 1475, 6509, 7959
|
RT (477–486)
|
TELQAIQLAL
…....R……….
|
Subtype C
|
B*18:01
|
641, 843, 3910
|
RT (491–501)
|
SEVNIVTDSQY
……..V………..
………M……...
|
Subtype C
|
B*44:03
|
3880, 6649, 6565
|
RT (509–518)
|
QPDKSESELV
……...G……..
|
Subtype A, B, C and D
|
B*07
|
1121, 3869
|
RT (519–527)
|
NQIIEQLIKK
S…………….
………….Q...
|
Subtype B
|
Not reported
|
6640, 6649, 843, 3869, 5054, 8828, 9986
|
RT (526–534)
|
IKKEKIYLA
…...K………
………V…...
…………...T
|
Subtype B
|
Not reported
|
6649, 641, 3920, 3935, 9986
|
RT (550–559)
|
KLVSQGIRKV
R……………..
……N……….
|
Subtype A, B, C and D
|
A*02:01
|
639, 1121, 3869, 9986
|
IN (22–31)
|
MASDFNLPPIV
…….E…………
………….S……
……………..M..
……………….E
|
Not reported
|
A*02
|
6649, 641, 843, 1121, 1475, 3910, 3869, 3920, 3935, 4351, 5054, 6565
|
IN (33–43)
|
AKEIVASCDKC
…..K…………..
………………..R
|
Not reported
|
Not reported
|
6649, 6990, 3253, 3920, 2678
|
IN (68–76)
|
LEGKIILVA
………..I….
|
Subtype B
|
B*40:06
|
6990, 639, 3253
|
IN (78–86)
|
HVASGYIEA
E……………
…..T………..
……T………
|
Subtype B
|
B*54:01
|
1121, 3935, 6565
|
IN (101–105)
|
ILKLAGRWPVK
A……………….
…..A…………...
………………..R
|
Subtype C
|
A*03:01
|
1121, 1475, 3474, 3869, 5054, 2678
|
IN (114–123)
|
HTDNGSNFTS
………..I……..
|
Subtype B
|
Cw*05
|
1121, 3869
|
IN (123–132)
|
SAAVKAACWW
..T………………
….T…………….
……………R…..
|
Subtype C
|
B*58:01
|
3880, 641, 843, 3935, 8828
|
IN (135–143)
|
IQQEFGIPYNPQ
…………...C…...
…………….Y…
|
Subtype C
|
B*15:03
|
1475, 6565
|
IN (164–172)
|
QVRDQAEHL
...M………….
…..L…………
…….E………
|
Subtype C
|
A*02:05
|
3869, 3920
|
IN (185–194)
|
FKRKGGIGGY
….K………….
……...R………
|
Subtype A, B and C
|
B*15:03; B*27:05; C*01
|
3920, 3935
|
IN (206–213)
|
TDIQTKEL
...E………..
…T……..
……….D..
|
Subtype B
|
B*40:02
|
3935, 6380, 6565
|
IN (213–220)
|
LQKQITKI
……H……
……….L...
|
Subtype B
|
B*52:01
|
843, 1475
|
IN (241–250)
|
LLWKGEGAVV
……………...M..
|
Not reported
|
A*02:01
|
6640, 641
|
IN (259–268)
|
VPRRKVKII
……G……..
………..A…
|
Subtype B and C
|
B*08:01
|
843, 3253, 3910, 3912, 5054
|
IN (278–288)
|
DDCVAGRQDED
………...S……….
……………….D..
…………………N
|
Not reported
|
Not reported
|
3253, 3910, 3935, 8828
|