4.1. Compliance with Ethical Standards
The study complies with the Declaration of Helsinki. The study protocol was approved by the Institutional Ethics Committee (0346 − 12, 04-02-2013). All experiments in this paper were performed according to the guidelines and regulations of the approved IRB protocols. Human patient-derived pancreatic cancer cells were obtained from pancreatic adenocarcinoma tumor biopsies approved by the Institutional Review Board (IRB)/Ethics (Helsinki) committee of the Hadassah Medical Center (#920051034, and 0628–14-HMO). All subjects gave their informed consent.
Six-week-old Foxn1 nu male mice were purchased from Jackson Laboratory (Bar Harbor, ME, USA). Animal studies were reviewed and approved by the Animal Care and Use Committee of Beth Israel Deaconess Medical Center, Boston, MA (protocol number 070-2016). Mice were housed at a maximum of 5 mice per cage in a pathogen-free facility with unlimited access to sterile water and chow. Daily welfare evaluations and animal sacrifices were carried out according to the Committee guidelines.
4.2. Human Pancreatic Adenocarcinoma Immunofluorescence Staining
Paraffinized patient-derived tissue sections containing microarrays were purchased from BioConsult LTD. First, the microarrays were deparaffinized by a multi-step method. The tissue-containing slides were baked in a dry 60°C oven for 30 min. A series of three xylene incubations (5 min each), followed by two 100% ethanol (10 min), one 96% ethanol (10 min), and 70% ethanol (5 min) incubations were performed. Slides were washed while shaking for 10 min with DDW and for another 10 min with 0.1% tween 20 (diluted in PBS). Heat-induced epitope retrieval (HIER) was performed by heating 20 min in a TRIS/EDTA buffer solution (1.21g Tris base, 0.37g EDTA, 0.5 ml tween 20 in 100 ml DDW, diluted 1:10 with DDW before use). Tissue section blocking was performed by incubation for 30 minutes in 3% normal goat serum (VE-S-1000, Vector Labs) and 3% normal rabbit serum (VE-S-5000, Vector Labs). Blocking solution was removed and first Ab diluted in 3% normal goat or rabbit serum were placed on the slides for overnight incubation in 4°C. The Ab were diluted as follows: anti-fibroblasts (BCL271, Merck) -1:25, anti-CD31 (ab28364, Abcam) -1:50, anti-collagen-IV (ab6586, Abcam) -1:500, anti-hyaluronic acid (ab53842, Abcam) -1:250 and anti-MetAp2 (Ab134124, Abcam, Cambridge, UK) -1:50. After incubation, the slides were washed three times with tween diluted in PBS and incubated for 2 h with a secondary Abs diluted in 3% goat serum or in rabbit serum. All second Ab were diluted in a ratio of 1:200. The slides were washed three times with tween diluted in PBS and then incubated with DAPI (1:1,000) for nuclei staining. After three washes with PBS, the mounting media was applied on the slides and samples were visualized using a fluorescent microscope (Olympus IX-73). Tissue staining analysis was performed using ImageJ analysis software. The fluorescently dyed tissue intensities were evaluated for the different markers by measuring the pixels stained per area, followed by normalizing the number of cells represented by blue DAPI nuclei staining. The markers included: fibroblasts, CD31, collagen IV and hyaluronic acid. The data was divided into 4 main groups: normal tissue, normal tissue adjacent to the tumor (NAT), primary tissue (stages I-IV) and metastatic tissues. n = 7–50.
4.3. Cell Culture
Human pancreatic cancer cell lines BxPC-3, PANC-1 and AsPC-1 (ATCC, Manassas, Virginia, USA), HUVECs (Lonza, Walkersville, MD, USA) and PancOH7 (obtained from Dr. Dipak Panigrahy's lab [47]) were characterized and mycoplasma free (EZ-PCR mycoplasma test kit [Biological Industries, Beit HaEmek, Israel]) before use. All cells were kept in a humidified incubator at 37°C with 5% CO2. PANC-1 and PancOH7 were maintained in DMEM (Life Technologies, Carlsbad, California, USA) and supplemented with 10% FCS and penicillin/streptomycin (P/S). BxPC-3 and AsPC-1 cells were maintained in RPMI-1640 (Life Technologies) and supplemented with 10% FCS and P/S. HUVECs were cultured in a medium supplemented with the PeproGrow-MacroV kit (ENDO-BM & GS-MacroV, PeproTech) and P/S. PC cells (patient-derived pancreatic cancer cells) were isolated from pancreatic cancer tissue by digesting the tissue for 30 min at 37°C with 5% CO2 in DMEM/F12 medium (Life Technologies) and supplemented with P/S and 0.14 Wunsch units/mL of LiberaseTM Research Grade (Roche Diagnostics, Basel, Switzerland). A stop reaction medium (DMEM/F12 supplemented with 15% FCS and P/S) was used to stop the digestion, after which the digested tissue was filtered through a cell strainer. Epithelial cells were isolated using the sedimentation technique (as previously described [48]) and maintained in DMEM/F12 medium supplemented with 1-% FCS, 1% Glutamine, EGF, Insulin, HEPES and P/S.
4.4. Western Blot
A RIPA buffer in a protease inhibitor cocktail (Sigma Aldrich, St. Louis City, Missouri, USA, S8820) was used for 30 min on ice in order to cause cell lysis. Cell lysates were then centrifuged, and the supernatant was collected. BCA Protein Assay kit (PierceTM, Thermo Fisher Scientific, Cambridge, Massachusetts, USA) was used to determine the protein content. A 12.5% Tris-glycine SDS-PAGE was used to separate the proteins (15 µg protein) that were next transferred onto a polyvinylidene difluoride membrane (Millipore Corporation, Billerica, MA, USA). Membranes were blocked for 2 h and then incubated with anti-MetAp2 abs or anti-MetAp1 abs, Ab134124 or Ab185540 (Abcam, Cambridge, UK), respectively, overnight at 4°C in TBST containing 5% BSA. Next, the membranes were washed three times in TBST and incubated with a 1:5,000 dilution of goat anti-rabbit secondary ab conjugated to horseradish peroxidase for 1 h (Ab97080, Abcam). β-actin or cofilin, Ab49900 or Ab124979 (Abcam), respectively, were used as the loading control. Original Western Blot images are shown in Fig. 3S.
4.5. Activity Assay
BxPC-3, PANC-1, AsPC-1, PancOH7 and PC cells were counted and then centrifuged and resuspended in an appropriate volume of cold RIPA buffer containing a protease inhibitor cocktail to obtain an equivalent cell number in the cell homogenates. The Eppendorf containing the cells was placed in ice and a probe sonicator (Sonic Ruptor 400, OMNI International) was used to disrupt them. Centrifugation at 15,000 RPM for 10 min at 4°C was used to remove insoluble cellular components. Next, the Bradford protein assay was conducted (using BSA as the standard)[49] in order to determine the protein content of the supernatant. 5 µg of protein and the substrate L-Met-AMC (Sancta Cruz Biotechnology) in an assay buffer (containing 50 mM HEPES, 0.1 mM CoCl2, 100 mM NaCl and 1 mg/mL PEG 6,000, in a final volume of 100 µL) were used to test the enzymatic activity of MetAp. Fluorescence was measured every minute and 30 sec or every minute and 45 sec for MetAp1 or MetAp2, respectively, for ~ 40 min at 25°C, using a plate reader (Synergy HT Multi-Mode Microplate Reader, BioTek). n = 3.
4.6. Activity Assay Following MetAp2 Inhibition
BxPC-3, PancOH7, AsPC-1 and PANC-1 cells were cultured in 10x10 cm petri dishes, left to grow to 80–90% confluency, washed with cold PBS and scraped on ice using a protease inhibitor-free RIPA buffer. A total of three dishes were scraped from each cell line using the same buffer, which was transferred from one plate to the other. Centrifugation at 15,000 RPM for 10 min at 4°C was done to remove insoluble cellular components. The protein content of the supernatant was determined as previously mentioned. The enzymatic assay was performed using 5 µg of protein per sample, as described previously. The samples were incubated with TNP-470 (O-Chloroacetylcarbamoy fumagillol [MedChem Partners, Lexington, MA, USA]) for 15 min at RT before adding the substrate. An increase of fluorescence (due to substrate degradation during the enzymatic assay) was measured every 20 sec for 1 h at 25°C using a plate reader, as previously mentioned. n = 3.
4.7. Viability Assay
BxPC-3, PancOH7, AsPC-1 and PANC-1 cells were seeded in 96-well plates (2,000 cells/well). After 24 h, the cells were exposed to a range of TNP-470 concentrations (0–5 µM) for either 24 (BxPC-3 and PancOH7 cells) or 48 h (AsPC-1 and PANC-1 cells) to detect viability. MTT (Sigma Aldrich, St. Louis City, Missouri, USA) was added (0.5 mg/mL) into each well and incubated at 37°C and 5% CO2 for 3 h. Their absorbance was measured at 570 nm, using a plate reader (Wallac 1420 VICTOR plate reader, Perkin-Elmer Life Sciences, USA). n = 5.
4.8. Quantification of Oxidized and Reduced Glutathione
The Quantification kit for oxidized and reduced glutathione was purchased from Sigma-Aldrich (item no. 38185, Milan, Italy). Quantification of glutathione was determined in AsPC-1, BxPC-3, PancOH7 and PC cells, with and without treatment with TNP-470 10 µM, according to Akerboom et al.'s study [50], following the manufacturer's guidelines. Cells were harvested by centrifugation. The different forms of glutathione were extracted in a buffer containing sulfosalicylic acid. Glutathione reductase’s enzymatic reaction was used for quantification. Oxidized glutathione was specifically quantified by treating the cell lysate with 2-vinylpyridine. Fluorescence was measured every 2 min and 40 sec for ~ 35 min at 25°C using a plate reader (Synergy HT Multi-Mode Microplate Reader, BioTek). n = 3.
4.9. Murine Orthotopic Tumors
Pancreatic orthotopic tumors were developed in Foxn1 nu mice by injecting 1 × 105 PancOH7 cells directly into their pancreases with a 30-G needle. Treatment was initiated on the day of tumor cell injection. Oral TNP-470 (mPEG-PLA-TNP-470) was prepared as previously mentioned by Benny et al. [24] and was given 30 mg/kg equivalent q.o.d. Control mice received empty mPEG-PLA carriers. Mice were weighed and observed daily throughout the experiment. On day 28, the mice were sacrificed, and the pancreatic tumors, ascites, livers and spleens were surgically removed and weighed. n = 5–7 mice/group.
4.10. Data Analysis and Statistics
Studies carried out on two groups were analyzed using the unpaired two-tailed Student’s t-test. Studies containing more than three groups were analyzed using a one-way analysis of variance (ANOVA), and significant differences were determined using Tuckey's multiple comparison post-test. Differences were considered statistically significant for p < 0.05. Results are presented as the mean ± SEM. Statistical data was analyzed on GraphPad Prism 8 (www.graphpad.com, San Diego, California, USA) and all experiments had at least 2–3 independent replicates unless otherwise specified.